ViewGene

Locus Name:
GeneID:
Location:

GeneID:1425
TrivialName: PA14_15180
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15180
PAO1 Ortholog Locus:PA3781
Sequence Length:1281
Protein Length:426
Start: 1287182
Stop: 1285902
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07168.1|AE004797_3 (AE004797) probable transporter [Pseudomonas aeruginosa PAO1]
Identities = 423/426 (99%), Positives = 426/426 (100%)
Sequence:
ATGATGGCCATCGCCATGATCGCGGCCTTCGTGGTCAACCTCCTGCTCGGCCTGCCGCTGTTCCTCTGCCTG
CTGCTCACCGCGCTGGTGGGGTTCCTCTTCGTCGACCCGGCGCTGTTCGCCAACACCCTGCCGCAGCGCTTC
TTCGGCGGCATGGACATCTTCTCGCTGATGGCGATCCCGCTGTTCGTGCTGGCCGGCAACCTGATGAACCAT
TCCGGCATGACCCCGCGCCTGATGCGCCTGGCCAACGCCCTGGTCGGCCACTTCCGCGGCGGCCTCGGCCAC
GTCAACGTGGTCGCCGGGGTGTTCTTCGCCGGGGTCAACGGGTCCGCCGCGGCCGACGCTTCGGCACTCAGC
ACCCTGCTGGTGCCGGCCATGGAAAAGGAAGGCTACTCGCGGCGCTTCGCCGCCGGGCTGACCGCGGGCAGC
TCGCTGATCGGTCCGATCATCCCGCCGAGCATCTTCATGATCCTCTACTCCTCGCTGACCAACACCTCGGTG
GGCGAGCTGTTCCTCGCCGGGGTGATTCCCGGCCTGCTGCTGGCCGCCGCCTTCATGCTGCTGAACGCGGTG
TACGCCTACCGCAACGGGCTGCAGGCGCGCCATGCGGCACCGGCCTGGGGCGAGATCCTGGCGGCACTGTCC
GGCGCCCTGACCGCGCTGATCGCGCCGGTGATCATCGTCGCCGGAATCGTCCTGGGCCTGGTCACGCCCACC
GAGTCGGGCGCCCTGATCGCCCTCTACGTGGCGCTGGTCGGCCTGCTCCAGCGCCAACTGAGCCTGGTCGGG
CTGTGGAACTCGCTGCGCGAGACGGTACGCCTGACCGCCAGCATCTACGTGATCATCGCCGCCGCCTCGGTG
GTCAACTGGTTGCTCAACTACGCCCAGGTCGCCAGCGAGTTCGCCCAGTTGCTGGAGCCGTTCGGCCACTCG
CCGACCCTGATGCTGTTCATCATCAGTGCGGTGATCTTCGTCTGCGGCATGCTCATGGAGGAGGTCTCGGTA
CTGATGCTGCTGACACCGATAGTCGCTCCGGTGGCGCTGGCCGCCGGCGTGGATCCGGTGCACCTGGGGCTG
ATCTTCACCCTGAACATCACCATCGCCCTGATCACCCCACCAATGGGCGCCTGCCTGTTCATCGTGGCGACC
ATCAGCCGCCTCGATATCCTGGAAATGTTCAAGGGTATCTGGCCGTTCATCCTGCTGGCCCTGGGGGTACTC
TCGCTGCTGATCCTGTTCCCCTCCCTGACCCTGTGGCTGCCACGCCTGCTCAATTGA
Translation:
MMAIAMIAAFVVNLLLGLPLFLCLLLTALVGFLFVDPALFANTLPQRFFGGMDIFSLMAIPLFVLAGNLMNH
SGMTPRLMRLANALVGHFRGGLGHVNVVAGVFFAGVNGSAAADASALSTLLVPAMEKEGYSRRFAAGLTAGS
SLIGPIIPPSIFMILYSSLTNTSVGELFLAGVIPGLLLAAAFMLLNAVYAYRNGLQARHAAPAWGEILAALS
GALTALIAPVIIVAGIVLGLVTPTESGALIALYVALVGLLQRQLSLVGLWNSLRETVRLTASIYVIIAAASV
VNWLLNYAQVASEFAQLLEPFGHSPTLMLFIISAVIFVCGMLMEEVSVLMLLTPIVAPVALAAGVDPVHLGL
IFTLNITIALITPPMGACLFIVATISRLDILEMFKGIWPFILLALGVLSLLILFPSLTLWLPRLLN*
AnnotationID:1434GeneID:1425
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 17:05:03
Gene Name:
Confidence Code:3
GeneProduct:putative ABC transport system, membrane protein
Cell Localization:()
Synonyms:PA3781
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1593,COG4664
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO07663.1|AE016810_166 (AE016810) TRAP-type C4-dicarboxylate transport system, large
           permease component [Vibrio vulnificus CMCP6]
          Length = 427

 Score =  305 bits (782), Expect = 3e-82
 Identities = 157/413 (38%), Positives = 249/413 (60%), Gaps = 3/413 (0%)

>emb|CAC48687.1| (AL603642) putative permease protein [Sinorhizobium meliloti]
          Length = 426

 Score =  301 bits (770), Expect = 7e-81
 Identities = 154/410 (37%), Positives = 247/410 (60%), Gaps = 4/410 (0%)

>emb|CAE37417.1| (BX640429) Putative ABC transport system, membrane protein
           [Bordetella parapertussis]
          Length = 426

 Score =  295 bits (756), Expect = 3e-79
 Identities = 155/420 (36%), Positives = 251/420 (59%), Gaps = 3/420 (0%)
Structural Features:
COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, 
large permease component 
[Carbohydrate transport and metabolism]
CD-Length = 379 residues, 100.0% aligned
Score =  320 bits (821), Expect = 5e-88
Identities = 176/380 (46%), Positives = 247/380 (65%), Gaps = 2/380 (0%)

COG4664, FcbT3, TRAP-type mannitol/chloroaromatic compound transport system, 
large permease component
CD-Length = 447 residues,  98.4% aligned
Score =  172 bits (438), Expect = 1e-43
Identities = 124/444 (27%), Positives = 215/444 (48%), Gaps = 23/444 (5%)
Genomic Context:
Comment:
ReferenceID:2853
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19998
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31774
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1425_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1425

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2585 PA3781_tr translation of PA3781 426 99.29 99.99 0 2088.0
81408 gb|AAG07168.1|AE004797_3 (AE004797) probable transporter [Pseudomonas aeruginosa PAO1] 426 99.29 99.99 0 2088.0
GC ORFID: 44427How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3781Glimmer Score:
Start: 3666755Stop: 3668035
Length: 1281
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3781 translation of PA3781Homolog Bit Score 808.0
Other Homologs: t_PA3781 (ORF: GLIMMER)
GC ORF Sequence
ATGATGGCCATCGCCATGATCGCGGCCTTCGTGGTCAACCTCCTGCTCGGCCTGCCGCTGTTCCTCTGCCTG
CTGCTCACCGCGCTGGTGGGGTTCCTCTTCGTCGACCCGGCGCTGTTCGCCAACACCCTGCCGCAGCGCTTC
TTCGGCGGCATGGACATCTTCTCGCTGATGGCGATCCCGCTGTTCGTGCTGGCCGGCAACCTGATGAACCAT
TCCGGCATGACCCCGCGCCTGATGCGCCTGGCCAACGCCCTGGTCGGCCACTTCCGCGGCGGCCTCGGCCAC
GTCAACGTGGTCGCCGGGGTGTTCTTCGCCGGGGTCAACGGGTCCGCCGCGGCCGACGCTTCGGCACTCAGC
ACCCTGCTGGTGCCGGCCATGGAAAAGGAAGGCTACTCGCGGCGCTTCGCCGCCGGGCTGACCGCGGGCAGC
TCGCTGATCGGTCCGATCATCCCGCCGAGCATCTTCATGATCCTCTACTCCTCGCTGACCAACACCTCGGTG
GGCGAGCTGTTCCTCGCCGGGGTGATTCCCGGCCTGCTGCTGGCCGCCGCCTTCATGCTGCTGAACGCGGTG
TACGCCTACCGCAACGGGCTGCAGGCGCGCCATGCGGCACCGGCCTGGGGCGAGATCCTGGCGGCACTGTCC
GGCGCCCTGACCGCGCTGATCGCGCCGGTGATCATCGTCGCCGGAATCGTCCTGGGCCTGGTCACGCCCACC
GAGTCGGGCGCCCTGATCGCCCTCTACGTGGCGCTGGTCGGCCTGCTCCAGCGCCAACTGAGCCTGGTCGGG
CTGTGGAACTCGCTGCGCGAGACGGTACGCCTGACCGCCAGCATCTACGTGATCATCGCCGCCGCCTCGGTG
GTCAACTGGTTGCTCAACTACGCCCAGGTCGCCAGCGAGTTCGCCCAGTTGCTGGAGCCGTTCGGCCACTCG
CCGACCCTGATGCTGTTCATCATCAGTGCGGTGATCTTCGTCTGCGGCATGCTCATGGAGGAGGTCTCGGTA
CTGATGCTGCTGACACCGATAGTCGCTCCGGTGGCGCTGGCCGCCGGCGTGGATCCGGTGCACCTGGGGCTG
ATCTTCACCCTGAACATCACCATCGCCCTGATCACCCCACCAATGGGCGCCTGCCTGTTCATCGTGGCGACC
ATCAGCCGCCTCGATATCCTGGAAATGTTCAAGGGTATCTGGCCGTTCATCCTGCTGGCCCTGGGGGTACTC
TCGCTGCTGATCCTGTTCCCCTCCCTGACCCTGTGGCTGCCACGCCTGCTCAATTGA