ViewGene
Locus Name:
GeneID:
Location:

GeneID:1424
TrivialName: PA14_16930
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16930
PAO1 Ortholog Locus:PA3667
Sequence Length:1206
Protein Length:401
Start: 1452146
Stop: 1450941
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07055.1|AE004786_7 (AE004786) probable pyridoxal-phosphate dependent enzyme [Pseudomonas aeruginosa PAO1]
Identities = 401/401 (100%), Positives = 401/401 (100%)
Sequence:
ATGTCCCTGCCGTCTCCCTGGCGCGCCGACTTTCCGGCCTTTTCCGCCTTCGCCGCGGAaggCCTGACCTAC
CTCGACAGCGCCGCCACCGCCCAGAAGCCACAGGCCGTACTCGACGCCCTGAACGGCTACTACCTCGGCGGC
GCCGCCAACGTCCACCGCGCCCAACATGTCCCCGGCGAGCGCGCCACCCGGGCCTTCGAGGCCGCGCGCAGC
CGCGTCGCCCACTGGCTGCACGCCGGCAACCCGGCCGAGGTGCTGTTCACCCGCGGCACCACAGAGGCGATC
AACCTGGTGGCCTATGGCCTGGAGCGGCATTTCCGGCCTGGCGACGAACTGCTGGTCAGTGCCCTGGAACAC
CATGCCAACCTGCTTCCCTGGCAGCAGTTGGCCCTGCGCCGCGGCCTGGTCCTGCGCGTATTGCCGCTGGAC
GAGCGCGGGGTGATCGACCTGGAGCAGGCTCGCCATATCATCGGCGAGCGTACCCGCCTGCTGGCGATCAGC
CAGTTGTCCAACGTTCTCGGCACCTGGCAACCAGTGGTGGAGTTGATCCAGCTGGCCCGCGAGCGCGGTGCC
TGGACCCTGGTGGACGGCGCCCAGGGCAGCGTCCACGGACGCCACGACCTGCCGGGCCTGGGCTGCGACTTC
TACGCATTCTCCGGCCACAAGCTCTACGGCCCCGACGGCATCGGCGTGCTCTGGGGTCGCCCACAGGCCCTG
GAGCAACTGGCGCACTGGCAGTTCGGCGGCGAGATGGTACGCCACACCGGCTTCCACGAAGCCAGCTTCCAT
GCCGCTCCGCTCGGCTTCGAGGCGGGCACCCCGGCGGTTTCCGCGGCGATCGGCCTGGGCGCGACCATCGAC
TGGCTGGCCACCCTGGACGAAGCCGAAGTCGCCGCCCACGAAGGCGCCCTCCACGCCCGCCTGCTCGCCGGC
CTGCTGGCGCGCGACGGCGTCAGCCTGCTCGGCGAACCGCAGGCAGCGCTGGCCAGCTTCTGCGTCGACGGC
GTGCACGTCGCCGATCTCGCCCACCTGCTCGGCGAACAGGGCATCGCGGTGCGCGCCGGCCACCATTGCGCG
ATGCCGCTGCTGCAACGCCTCGAGGTACCCGGCGCCCTGCGTGTCTCGCTGGGCTTGTACAACGATGCCGAC
GACCTGGAGCGCTTCTTCCTGGCTCTCGACCGCTCACTGGAGTTGCTGCGATGA
Translation:
MSLPSPWRADFPAFSAFAAEGLTYLDSAATAQKPQAVLDALNGYYLGGAANVHRAQHVPGERATRAFEAARS
RVAHWLHAGNPAEVLFTRGTTEAINLVAYGLERHFRPGDELLVSALEHHANLLPWQQLALRRGLVLRVLPLD
ERGVIDLEQARHIIGERTRLLAISQLSNVLGTWQPVVELIQLARERGAWTLVDGAQGSVHGRHDLPGLGCDF
YAFSGHKLYGPDGIGVLWGRPQALEQLAHWQFGGEMVRHTGFHEASFHAAPLGFEAGTPAVSAAIGLGATID
WLATLDEAEVAAHEGALHARLLAGLLARDGVSLLGEPQAALASFCVDGVHVADLAHLLGEQGIAVRAGHHCA
MPLLQRLEVPGALRVSLGLYNDADDLERFFLALDRSLELLR*
AnnotationID:1433GeneID:1424
AnnotatorUID: diggins
Modification Date/Time: 2005-06-19 09:09:07
Gene Name:
Confidence Code:3
GeneProduct:putative cysteine sulfinate desulfinase
Cell Localization:()
Synonyms:csdA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0520,KOG1549,COG1104
Secondary Functional Category(ies):transport of small molecules
EC Number:4.4.1.-
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55047.1| (AE016861) cysteine sulfinate desulfinase [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 401

 Score =  551 bits (1420), Expect = e-156
 Identities = 268/401 (66%), Positives = 314/401 (78%)

>dbj|BAA75914.1| (AB024602) NIFS-like protein [Pseudomonas putida]
          Length = 401

 Score =  543 bits (1398), Expect = e-154
 Identities = 270/401 (67%), Positives = 317/401 (79%)






 
Structural Features:
COG0520, CsdB, Selenocysteine lyase 
[Amino acid transport and metabolism]
CD-Length = 405 residues,  99.8% aligned
Score =  422 bits (1087), Expect = 6e-119
Identities = 199/404 (49%), Positives = 260/404 (64%), Gaps = 5/404 (1%)

KOG1549, Cysteine desulfurase NFS1 
[Amino acid transport and metabolism]
CD-Length = 428 residues,  93.0% aligned
Score =  209 bits (533), Expect = 1e-54
Identities = 115/418 (27%), Positives = 189/418 (45%), Gaps = 37/418 (8%)

COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase 
and related enzymes 
[Amino acid transport and metabolism]
CD-Length = 386 residues,  97.4% aligned
Score =  192 bits (489), Expect = 1e-49
Identities = 129/397 (32%), Positives = 181/397 (45%), Gaps = 40/397 (10%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2851




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19996




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31877




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1424_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1424
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2584
                           PA3667_tr
                           translation of PA3667
                           401
                           99.99
                           99.99
                           0
                           2086.0
     

     
     
81308
                           gb|AAG07055.1|AE004786_7
                           (AE004786) probable pyridoxal-phosphate dependent enzyme [Pseudomonas aeruginosa PAO1]
                           401
                           99.99
                           99.99
                           0
                           2086.0
     

     
     
81310
                           gb|AAN67150.1|AE016343_10
                           (AE016779) cysteine sulfinate desulfinase [Pseudomonas putida KT2440]
                           401
                           67.33
                           79.05
                           0
                           1398.0
     

     
     
81311
                           dbj|BAA75914.1|
                           (AB024602) NIFS-like protein [Pseudomonas putida]
                           401
                           67.33
                           79.05
                           0
                           1398.0
     

     
     
81309
                           gb|AAO55047.1|
                           (AE016861) cysteine sulfinate desulfinase [Pseudomonas syringae pv. tomato str. DC3000]
                           401
                           66.83
                           78.30
                           0
                           1420.0
     

     






      

          
GC ORFID: 44426How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3667Glimmer Score: 

          
Start: 3501791Stop: 3502996

          
Length: 1206


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3667 translation of PA3667Homolog Bit Score 808.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4804 (ORF: BLASTX 536.0), t_PA3667 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCCTGCCGTCTCCCTGGCGCGCCGACTTTCCGGCCTTTTCCGCCTTCGCCGCGGAaggCCTGACCTAC 
CTCGACAGCGCCGCCACCGCCCAGAAGCCACAGGCCGTACTCGACGCCCTGAACGGCTACTACCTCGGCGGC 
GCCGCCAACGTCCACCGCGCCCAACATGTCCCCGGCGAGCGCGCCACCCGGGCCTTCGAGGCCGCGCGCAGC 
CGCGTCGCCCACTGGCTGCACGCCGGCAACCCGGCCGAGGTGCTGTTCACCCGCGGCACCACAGAGGCGATC 
AACCTGGTGGCCTATGGCCTGGAGCGGCATTTCCGGCCTGGCGACGAACTGCTGGTCAGTGCCCTGGAACAC 
CATGCCAACCTGCTTCCCTGGCAGCAGTTGGCCCTGCGCCGCGGCCTGGTCCTGCGCGTATTGCCGCTGGAC 
GAGCGCGGGGTGATCGACCTGGAGCAGGCTCGCCATATCATCGGCGAGCGTACCCGCCTGCTGGCGATCAGC 
CAGTTGTCCAACGTTCTCGGCACCTGGCAACCAGTGGTGGAGTTGATCCAGCTGGCCCGCGAGCGCGGTGCC 
TGGACCCTGGTGGACGGCGCCCAGGGCAGCGTCCACGGACGCCACGACCTGCCGGGCCTGGGCTGCGACTTC 
TACGCATTCTCCGGCCACAAGCTCTACGGCCCCGACGGCATCGGCGTGCTCTGGGGTCGCCCACAGGCCCTG 
GAGCAACTGGCGCACTGGCAGTTCGGCGGCGAGATGGTACGCCACACCGGCTTCCACGAAGCCAGCTTCCAT 
GCCGCTCCGCTCGGCTTCGAGGCGGGCACCCCGGCGGTTTCCGCGGCGATCGGCCTGGGCGCGACCATCGAC 
TGGCTGGCCACCCTGGACGAAGCCGAAGTCGCCGCCCACGAAGGCGCCCTCCACGCCCGCCTGCTCGCCGGC 
CTGCTGGCGCGCGACGGCGTCAGCCTGCTCGGCGAACCGCAGGCAGCGCTGGCCAGCTTCTGCGTCGACGGC 
GTGCACGTCGCCGATCTCGCCCACCTGCTCGGCGAACAGGGCATCGCGGTGCGCGCCGGCCACCATTGCGCG 
ATGCCGCTGCTGCAACGCCTCGAGGTACCCGGCGCCCTGCGTGTCTCGCTGGGCTTGTACAACGATGCCGAC 
GACCTGGAGCGCTTCTTCCTGGCTCTCGACCGCTCACTGGAGTTGCTGCGATGA