ViewGene
Locus Name:
GeneID:
Location:

GeneID:1423
TrivialName: PA14_39750
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39750
PAO1 Ortholog Locus:PA1916
Sequence Length:1233
Protein Length:410
Start: 3540887
Stop: 3542119
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05304.1|AE004617_8 (AE004617) probable amino acid permease [Pseudomonas aeruginosa PAO1]
Identities = 408/410 (99%), Positives = 409/410 (99%)
Sequence:
ATGGGTATGCGAGAAGCGAACGACAACGCATCGGGCCTCAAGGCCCATCCCCTGGGCTCGCTCGAGACGATC
GCGATCATCATCGGCACCAACATCGGCGCCGGCGTGCTGAGCATGGCCTACGCCGCCCGCAAGGTCGGCTAC
GTGCCGTTGCTGGTATGCCTGGCCCTGACCTGCCTCTTCTGCATCGTCACCATGCTCTACGTGACCGAAGCC
TGCCTGAGGACCCGCGGCAACAACCAGCTCAGCGGCCTCTCCCGGCGTTACCTGGGCCCGCTCGGCGGCTGG
CTGATCTTCATCGCGGTGGCGGCCAACAGCTACGGGGCCCTGGTCGCCTACATGACCGGCAGCGGCAACATC
ATGCTCGAGTTCTTCGGCCAGTACGGCCTCACGCGCGAGGTCGGCAGCCTGATCTTCTTCGTCCCCTCGGCG
CTGGTGCTCTACCTGGGCCTGAAGGCGCTCGGCGTGGGCGAGAAGCTGATCAGCGCCGGCATGGTGGCCATC
GTCTGCATCCTCATCGGCGCTACCCTGATGCACGACGACGCCCGTCTCGCCCACCTTTGGCAGAGCCAGTGG
CAATACGTGGTTCCAGTGTTCAACCTGGCGGTCTTCGTGTTCGGCGCGCAGTTCCTGGTTCCGGAGCTGGTG
CGCGGCAACCTGGCAACCCCCGCGCGCGTGCCGCGCCTGATCGTGGTCGGCATGCTGCTGACCTTCCTGCTG
GTGGCGGCCATTCCTGCCTCGGTCATCGCCCTGGTCGGCCCCGACAACCTCAGCGAGGTGGCGACCTTGAGC
TGGGGACGCTCCCTCGGCCAATGGGCCTACTACGTGGCGAACACCTTCGCCTTGCTGGCGATGCTGACCTCC
TACTGGGGACTCGGCGGGTGCCTGTTCACCAATATCTTCGACCACTTCCGCCTGGGCAGCGAAACCAACCGG
CGCAAACGCCTGGCGGTGCTCGCCGCGGTCTCGGTCCCGCCGTTCCTGCTGGCCTATGCGGGGCTCGGCGGC
TTCGTGAACGCGCTGTACTTCGCCGGTACCTTCGGCGGCGTACTGATGGGCATCATCCCCATCCTCCTGCTC
AACGCGGCGCGGCGCCACGGCGACCAACTGCCGGCATTCAGCTGCGGCTGGTATGCCCATCCGCTGATACAG
GGGCTGATCGTCCTGGTGTTCGCCTCCAGCGGGGTCTACGCGATCGCCTCGGCACTGGGGATGCTGCCCGCC
AGTTGGTGA
Translation:
MGMREANDNASGLKAHPLGSLETIAIIIGTNIGAGVLSMAYAARKVGYVPLLVCLALTCLFCIVTMLYVTEA
CLRTRGNNQLSGLSRRYLGPLGGWLIFIAVAANSYGALVAYMTGSGNIMLEFFGQYGLTREVGSLIFFVPSA
LVLYLGLKALGVGEKLISAGMVAIVCILIGATLMHDDARLAHLWQSQWQYVVPVFNLAVFVFGAQFLVPELV
RGNLATPARVPRLIVVGMLLTFLLVAAIPASVIALVGPDNLSEVATLSWGRSLGQWAYYVANTFALLAMLTS
YWGLGGCLFTNIFDHFRLGSETNRRKRLAVLAAVSVPPFLLAYAGLGGFVNALYFAGTFGGVLMGIIPILLL
NAARRHGDQLPAFSCGWYAHPLIQGLIVLVFASSGVYAIASALGMLPASW*
AnnotationID:1432GeneID:1423
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 11:11:12
Gene Name:
Confidence Code:3
GeneProduct:putative amino acid permease
Cell Localization:()
Synonyms:PA1916
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative tyrosine permease
Functional Category Confidence Code:5
COGs:COG0814,pfam03222
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAB97874.1| (AP005275) Amino acid permeases [Corynebacterium glutamicum ATCC
           13032]
          Length = 397

 Score =  315 bits (806), Expect = 4e-85
 Identities = 173/402 (43%), Positives = 251/402 (62%), Gaps = 9/402 (2%)








 
Structural Features:
COG0814, SdaC, Amino acid permeases 
[Amino acid transport and metabolism]
CD-Length = 415 residues, 100.0% aligned
Score =  183 bits (467), Expect = 2e-47
Identities = 111/418 (26%), Positives = 175/418 (41%), Gaps = 24/418 (5%)

pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine permease family.
CD-Length = 393 residues,  91.3% aligned
Score =  112 bits (282), Expect = 7e-26
Identities = 81/361 (22%), Positives = 145/361 (40%), Gaps = 17/361 (4%)







   
Genomic Context:






   
Comment:


















    ReferenceID:2849




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19994




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37037




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1423_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1423
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2582
                           PA1916_tr
                           translation of PA1916
                           410
                           99.51
                           99.75
                           0
                           2088.0
     

     
     
81305
                           gb|AAG05304.1|AE004617_8
                           (AE004617) probable amino acid permease [Pseudomonas aeruginosa PAO1]
                           410
                           99.51
                           99.75
                           0
                           2088.0
     

     
     
2583
                           PA3766_tr
                           translation of PA3766
                           422
                           55.92
                           73.93
                           16
                           1238.0
     

     
     
81306
                           gb|AAG07153.1|AE004795_5
                           (AE004795) probable aromatic amino acid transporter [Pseudomonas aeruginosa PAO1]
                           422
                           55.92
                           73.93
                           16
                           1238.0
     

     
     
81307
                           dbj|BAB97874.1|
                           (AP005275) Amino acid permeases [Corynebacterium glutamicum ATCC 13032]
                           414
                           42.02
                           60.86
                           21
                           817.0
     

     






      

          
GC ORFID: 44425How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1916Glimmer Score: 

          
Start: 1413024Stop: 1411792

          
Length: 1233


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1916 translation of PA1916Homolog Bit Score 808.0

          
Other Homologs:  t_PA1916 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGTATGCGAGAAGCGAACGACAACGCATCGGGCCTCAAGGCCCATCCCCTGGGCTCGCTCGAGACGATC 
GCGATCATCATCGGCACCAACATCGGCGCCGGCGTGCTGAGCATGGCCTACGCCGCCCGCAAGGTCGGCTAC 
GTGCCGTTGCTGGTATGCCTGGCCCTGACCTGCCTCTTCTGCATCGTCACCATGCTCTACGTGACCGAAGCC 
TGCCTGAGGACCCGCGGCAACAACCAGCTCAGCGGCCTCTCCCGGCGTTACCTGGGCCCGCTCGGCGGCTGG 
CTGATCTTCATCGCGGTGGCGGCCAACAGCTACGGGGCCCTGGTCGCCTACATGACCGGCAGCGGCAACATC 
ATGCTCGAGTTCTTCGGCCAGTACGGCCTCACGCGCGAGGTCGGCAGCCTGATCTTCTTCGTCCCCTCGGCG 
CTGGTGCTCTACCTGGGCCTGAAGGCGCTCGGCGTGGGCGAGAAGCTGATCAGCGCCGGCATGGTGGCCATC 
GTCTGCATCCTCATCGGCGCTACCCTGATGCACGACGACGCCCGTCTCGCCCACCTTTGGCAGAGCCAGTGG 
CAATACGTGGTTCCAGTGTTCAACCTGGCGGTCTTCGTGTTCGGCGCGCAGTTCCTGGTTCCGGAGCTGGTG 
CGCGGCAACCTGGCAACCCCCGCGCGCGTGCCGCGCCTGATCGTGGTCGGCATGCTGCTGACCTTCCTGCTG 
GTGGCGGCCATTCCTGCCTCGGTCATCGCCCTGGTCGGCCCCGACAACCTCAGCGAGGTGGCGACCTTGAGC 
TGGGGACGCTCCCTCGGCCAATGGGCCTACTACGTGGCGAACACCTTCGCCTTGCTGGCGATGCTGACCTCC 
TACTGGGGACTCGGCGGGTGCCTGTTCACCAATATCTTCGACCACTTCCGCCTGGGCAGCGAAACCAACCGG 
CGCAAACGCCTGGCGGTGCTCGCCGCGGTCTCGGTCCCGCCGTTCCTGCTGGCCTATGCGGGGCTCGGCGGC 
TTCGTGAACGCGCTGTACTTCGCCGGTACCTTCGGCGGCGTACTGATGGGCATCATCCCCATCCTCCTGCTC 
AACGCGGCGCGGCGCCACGGCGACCAACTGCCGGCATTCAGCTGCGGCTGGTATGCCCATCCGCTGATACAG 
GGGCTGATCGTCCTGGTGTTCGCCTCCAGCGGGGTCTACGCGATCGCCTCGGCACTGGGGATGCTGCCCGCC 
AGTTGGTGA