ViewGene

Locus Name:
GeneID:
Location:

GeneID:1421
TrivialName: PA14_48140
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48140
PAO1 Ortholog Locus:PA1245
Sequence Length:1245
Protein Length:414
Start: 4285179
Stop: 4283935
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04634.1|AE004554_2 (AE004554) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 414/414 (100%), Positives = 414/414 (100%)
Sequence:
ATGGGATTATTCAATGCAGCCGCGAACCTGTTCGGCCAGGTCTACGAGCGCGCGACGCAGGTGGCCGCCACC
GCCGTCACGGCGGTGGCGGACGTGGCCAGGACATTGGTGGGCTCCACCGTCGACGCTGTGGAGCAGCAGGTG
CACGAAGCGCTGACATCGGTGCATGACGCCGTTGCCAGCGTGGAGCAGGCGCTGGAGGGTACGGTCGGCGCG
GTGGCCGGCACGCTCGGCGAGATCGCCGGCGACGCCCTCGACACCGTAGGCTCCGCGGTCGGCACGCTGGGC
GGGCTGGCCGGCAACTCGCTGGCGATCGCCGACGACTTGTTGCACGGGCGCGTCGAGCCGGAGGATTACCTG
AAGCTGGTCGGTGACCTGGGGCAGGGCGTCGGTGCCACCGTCGGCCATGCCTGGGAATTCGGCAGCGACAGC
CTGAAGGCCGCCAACGATCTCTACCACGCCGCCTACCAGGGTGGCTCGCTAAGCCTCGGCAATAGCGACGGC
CTGCTCGGGGTCAATGTGATCGGCTCGCTGCTCGGCGGCAATCACGACCAGGGCGTGATTCCCGATAGCCGC
GGCATCCTCGGCCCGCTGCCGATCAACGTCTCCTTCACCGAGCAAGGCCTGACCTTCGGCGGCGAGACGCCG
CTGACTCCGCTGGTCACCGCAGCCCTGGCGCTGAATCCGATCACCGCGCCGCTGGTGCCGGTGCTGGCGCCG
CTCAACCTCGGCGGCCTGGGAGTGGTCGGCTCGGTCGACAAGGAAGGCTTCAGCGCCAAGTTCTACGGTATC
GCCGGACCCAGCTACAACCTCGGCGTGGCCAATCTCGGCGGCACCCTGGAGCTGGGTAGCTACAACGAGGTC
AAGCTGCTGAGCTGGAACGAGGTGACCCTCAAGGACCTGCCCATCGTCGGCGGCATCCTCGGCTACGTGCCG
GTGGTCAAGGACATCGGTGTCTCGCTGCCGACGCTGGACCTGCACTTCGACAGCAAGCTGTATGCGCAAACG
ATTGCCGGTGTCGATGTCGCCGGGGTCGGGCCGAAGGGCCAGATCGAGCTGGTGCATGACCTCGACAATGAC
CTGTCGATCGTCGCCGGTATCGCCGGGGATACCGCGCACAGCGCCCTGGACGGTGCCGGCAAGGTGCTCGCG
GCGCTGCTCGGCCACGGCGGCGAAGCGGCGCCGCCGACAATCCAGCTGATCGGCGCCGACCCGGCGCCGGAG
CATCAGGCCCTGGCCGCCTGA
Translation:
MGLFNAAANLFGQVYERATQVAATAVTAVADVARTLVGSTVDAVEQQVHEALTSVHDAVASVEQALEGTVGA
VAGTLGEIAGDALDTVGSAVGTLGGLAGNSLAIADDLLHGRVEPEDYLKLVGDLGQGVGATVGHAWEFGSDS
LKAANDLYHAAYQGGSLSLGNSDGLLGVNVIGSLLGGNHDQGVIPDSRGILGPLPINVSFTEQGLTFGGETP
LTPLVTAALALNPITAPLVPVLAPLNLGGLGVVGSVDKEGFSAKFYGIAGPSYNLGVANLGGTLELGSYNEV
KLLSWNEVTLKDLPIVGGILGYVPVVKDIGVSLPTLDLHFDSKLYAQTIAGVDVAGVGPKGQIELVHDLDND
LSIVAGIAGDTAHSALDGAGKVLAALLGHGGEAAPPTIQLIGADPAPEHQALAA*
AnnotationID:1430GeneID:1421
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 09:09:24
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:aprX
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:2845
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19990
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:1421

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2580 PA1245_tr translation of PA1245 414 99.99 99.99 0 2087.0
81293 gb|AAG04634.1|AE004554_2 (AE004554) hypothetical protein PA1245 [Pseudomonas aeruginosa PAO1] 414 99.99 99.99 0 2087.0
81294 emb|CAA05794.1| (AJ003006) aprX [Pseudomonas aeruginosa] 414 99.99 99.99 0 2087.0
GC ORFID: 44423How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1245Glimmer Score:
Start: 668729Stop: 669973
Length: 1245
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1245 translation of PA1245Homolog Bit Score 808.0
Other Homologs: t_PA1245 (ORF: GLIMMER)
GC ORF Sequence
ATGGGATTATTCAATGCAGCCGCGAACCTGTTCGGCCAGGTCTACGAGCGCGCGACGCAGGTGGCCGCCACC
GCCGTCACGGCGGTGGCGGACGTGGCCAGGACATTGGTGGGCTCCACCGTCGACGCTGTGGAGCAGCAGGTG
CACGAAGCGCTGACATCGGTGCATGACGCCGTTGCCAGCGTGGAGCAGGCGCTGGAGGGTACGGTCGGCGCG
GTGGCCGGCACGCTCGGCGAGATCGCCGGCGACGCCCTCGACACCGTAGGCTCCGCGGTCGGCACGCTGGGC
GGGCTGGCCGGCAACTCGCTGGCGATCGCCGACGACTTGTTGCACGGGCGCGTCGAGCCGGAGGATTACCTG
AAGCTGGTCGGTGACCTGGGGCAGGGCGTCGGTGCCACCGTCGGCCATGCCTGGGAATTCGGCAGCGACAGC
CTGAAGGCCGCCAACGATCTCTACCACGCCGCCTACCAGGGTGGCTCGCTAAGCCTCGGCAATAGCGACGGC
CTGCTCGGGGTCAATGTGATCGGCTCGCTGCTCGGCGGCAATCACGACCAGGGCGTGATTCCCGATAGCCGC
GGCATCCTCGGCCCGCTGCCGATCAACGTCTCCTTCACCGAGCAAGGCCTGACCTTCGGCGGCGAGACGCCG
CTGACTCCGCTGGTCACCGCAGCCCTGGCGCTGAATCCGATCACCGCGCCGCTGGTGCCGGTGCTGGCGCCG
CTCAACCTCGGCGGCCTGGGAGTGGTCGGCTCGGTCGACAAGGAAGGCTTCAGCGCCAAGTTCTACGGTATC
GCCGGACCCAGCTACAACCTCGGCGTGGCCAATCTCGGCGGCACCCTGGAGCTGGGTAGCTACAACGAGGTC
AAGCTGCTGAGCTGGAACGAGGTGACCCTCAAGGACCTGCCCATCGTCGGCGGCATCCTCGGCTACGTGCCG
GTGGTCAAGGACATCGGTGTCTCGCTGCCGACGCTGGACCTGCACTTCGACAGCAAGCTGTATGCGCAAACG
ATTGCCGGTGTCGATGTCGCCGGGGTCGGGCCGAAGGGCCAGATCGAGCTGGTGCATGACCTCGACAATGAC
CTGTCGATCGTCGCCGGTATCGCCGGGGATACCGCGCACAGCGCCCTGGACGGTGCCGGCAAGGTGCTCGCG
GCGCTGCTCGGCCACGGCGGCGAAGCGGCGCCGCCGACAATCCAGCTGATCGGCGCCGACCCGGCGCCGGAG
CATCAGGCCCTGGCCGCCTGA