ViewGene
Locus Name:
GeneID:
Location:

GeneID:1420
TrivialName: PA14_07890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07890
PAO1 Ortholog Locus:PA0605
Sequence Length:1248
Protein Length:415
Start: 679930
Stop: 681177
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03994.1|AE004497_1 (AE004497) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 412/415 (99%), Positives = 413/415 (99%)
Sequence:
ATGGCCACAGCTGTGCCCATGTCCCAGGCCACCGGCAGCACCCTCAAGCAACGCCTGGCGCGCGCCGAGCGG
ATGAACCGCCTGAAGTCCCAGGCGCTGATCCTGCCCCTGCTGGCCTTCCTGGTCCTGACCTTCCTGGTGCCG
ATCGCCGCGCTGCTCTACAAGAGCGTGTCCAACCCGGAAGTGGTTCGCTCGTTGCCGCTGACGGTAGAGGCC
ATCTCCGCCTGGGACGGCAAGTCGCTGCCGGCCGACGCCGTCTACAAGGCGCTCAGCCAGGATCTCGCCGAG
GCTCGTCGCAACCAGGCCATCGGCGATCTCTCCAAGCGCCTGAACATGGAGCTGGCCGGTTATCGCAGCCTG
ATGGCGAAGACCGCGCGCAAGCTGCCGTTCAAGGAGGAGCCCGCTTCCTACAAGGACGCCATGGAGCAGCTC
GACGAGCGCTGGGGCGACCCCGCCTACTGGCAGGTGATCCGCCGCAACGCCAGCAGCTATACGCCCTATTAC
CTGCTCGCAGCCCTCGACCACCGGATCGACGATCTCGGCGAAGTGGCGCGCGCCACCCCGGACCAGGCCATC
TACCTGGACATCTTCGCCCGCACCTTCTGGATGGGCGCGGTGATCACCGTCATCTGCCTGCTGCTGGCCTAC
CCGCTGGCCTACCTGCTGGCCAACCTGCCGACGCGCAAGAGCAACCTGCTGATGATCCTGGTCCTGCTGCCG
TTCTGGACCTCGATCCTGGTGCGTGTCGCCGCCTGGATCGTCCTGCTGCAATCGGGTGGCCTGATCAACGGC
GCGCTGCTCAAGCTCGGCCTGATCGACCAGCCGCTGCAACTGGTGTTCAACCGCACCGGCGTATACATCGCG
ATGGTGCACATCATGCTGCCGTTCATGATCCTGCCGATCTACAGCGTGATGAAGGGCATTTCGCCGAGCTAC
ATGCGCGCCGCGATTTCCCTCGGCTGCCACCCGTTCGCCAGCTTCTGGCGGGTGTATTTCCCACAGACCGTC
GCGGGCGTCGGCGCCGGTTGCCTGCTGGTGTTCATCCTGTCCATCGGCTACTACATCACCCCGGCGCTGCTG
GGCAGCCCGAACGACCAGATGGTCAGCTACTTCGTCGCCTTCTATACCAACAGCACCATCAACTGGGGCATG
GCCACCGCCCTCGGCGGCCTGCTGCTGCTCGCTACCCTGGTGCTCTACGTCGTCTACAGCTGGCTGGTGGGC
GCCAGCCGCCTGCGCCTGGGATAG
Translation:
MATAVPMSQATGSTLKQRLARAERMNRLKSQALILPLLAFLVLTFLVPIAALLYKSVSNPEVVRSLPLTVEA
ISAWDGKSLPADAVYKALSQDLAEARRNQAIGDLSKRLNMELAGYRSLMAKTARKLPFKEEPASYKDAMEQL
DERWGDPAYWQVIRRNASSYTPYYLLAALDHRIDDLGEVARATPDQAIYLDIFARTFWMGAVITVICLLLAY
PLAYLLANLPTRKSNLLMILVLLPFWTSILVRVAAWIVLLQSGGLINGALLKLGLIDQPLQLVFNRTGVYIA
MVHIMLPFMILPIYSVMKGISPSYMRAAISLGCHPFASFWRVYFPQTVAGVGAGCLLVFILSIGYYITPALL
GSPNDQMVSYFVAFYTNSTINWGMATALGGLLLLATLVLYVVYSWLVGASRLRLG*
AnnotationID:1429GeneID:1420
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 12:12:02
Gene Name:
Confidence Code:3
GeneProduct:putative permease of ABC transporter
Cell Localization:()
Synonyms:PA0605
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative polyamine ABC transporter, permease protein
Functional Category Confidence Code:5
COGs:COG1176
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66043.1|AE016233_9 (AE016775) polyamine ABC transporter, permease protein [Pseudomonas
           putida KT2440]
          Length = 415

 Score =  698 bits (1801), Expect = 0.0
 Identities = 342/414 (82%), Positives = 379/414 (91%)

>gb|AAO54106.1| (AE016857) polyamine ABC transporter, permease protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 415

 Score =  696 bits (1795), Expect = 0.0
 Identities = 341/414 (82%), Positives = 376/414 (90%)

>gb|AAM84964.1|AE013742_6 (AE013742) putative permease of ABC transporter [Yersinia pestis
           KIM]
          Length = 448

 Score =  432 bits (1111), Expect = e-120
 Identities = 215/396 (54%), Positives = 292/396 (73%), Gaps = 4/396 (1%)






 
Structural Features:
COG1176, PotB, ABC-type spermidine/putrescine transport system, 
permease component I 
[Amino acid transport and metabolism]
CD-Length = 287 residues,  96.9% aligned
Score =  243 bits (623), Expect = 2e-65
Identities = 112/278 (40%), Positives = 158/278 (56%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2843




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19988




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33900




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1420_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1420
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2578
                           PA0605_tr
                           translation of PA0605
                           415
                           99.27
                           99.51
                           0
                           2090.0
     

     
     
81256
                           gb|AAG03994.1|AE004497_1
                           (AE004497) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
                           415
                           99.27
                           99.51
                           0
                           2090.0
     

     
     
81257
                           gb|AAN66043.1|AE016233_9
                           (AE016775) polyamine ABC transporter, permease protein [Pseudomonas putida KT2440]
                           415
                           82.40
                           91.32
                           0
                           1801.0
     

     
     
81258
                           gb|AAO54106.1|
                           (AE016857) polyamine ABC transporter, permease protein [Pseudomonas syringae pv. tomato str. DC3000]
                           415
                           82.16
                           90.60
                           0
                           1795.0
     

     
     
81259
                           emb|CAD15434.1|
                           (AL646066) PROBABLE TRANSPORT SYSTEM PERMEASE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
                           427
                           57.37
                           71.89
                           19
                           1244.0
     

     






      

          
GC ORFID: 44422How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0605Glimmer Score: 

          
Start: 6481273Stop: 6482520

          
Length: 1248


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0605 translation of PA0605Homolog Bit Score 809.0

          
Other Homologs:  psyr_15may02_Scaffold13_revised_gene2136 (ORF: BLASTX 689.0), t_PA0325 (ORF: BLASTX 169.0), t_PA0605 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCACAGCTGTGCCCATGTCCCAGGCCACCGGCAGCACCCTCAAGCAACGCCTGGCGCGCGCCGAGCGG 
ATGAACCGCCTGAAGTCCCAGGCGCTGATCCTGCCCCTGCTGGCCTTCCTGGTCCTGACCTTCCTGGTGCCG 
ATCGCCGCGCTGCTCTACAAGAGCGTGTCCAACCCGGAAGTGGTTCGCTCGTTGCCGCTGACGGTAGAGGCC 
ATCTCCGCCTGGGACGGCAAGTCGCTGCCGGCCGACGCCGTCTACAAGGCGCTCAGCCAGGATCTCGCCGAG 
GCTCGTCGCAACCAGGCCATCGGCGATCTCTCCAAGCGCCTGAACATGGAGCTGGCCGGTTATCGCAGCCTG 
ATGGCGAAGACCGCGCGCAAGCTGCCGTTCAAGGAGGAGCCCGCTTCCTACAAGGACGCCATGGAGCAGCTC 
GACGAGCGCTGGGGCGACCCCGCCTACTGGCAGGTGATCCGCCGCAACGCCAGCAGCTATACGCCCTATTAC 
CTGCTCGCAGCCCTCGACCACCGGATCGACGATCTCGGCGAAGTGGCGCGCGCCACCCCGGACCAGGCCATC 
TACCTGGACATCTTCGCCCGCACCTTCTGGATGGGCGCGGTGATCACCGTCATCTGCCTGCTGCTGGCCTAC 
CCGCTGGCCTACCTGCTGGCCAACCTGCCGACGCGCAAGAGCAACCTGCTGATGATCCTGGTCCTGCTGCCG 
TTCTGGACCTCGATCCTGGTGCGTGTCGCCGCCTGGATCGTCCTGCTGCAATCGGGTGGCCTGATCAACGGC 
GCGCTGCTCAAGCTCGGCCTGATCGACCAGCCGCTGCAACTGGTGTTCAACCGCACCGGCGTATACATCGCG 
ATGGTGCACATCATGCTGCCGTTCATGATCCTGCCGATCTACAGCGTGATGAAGGGCATTTCGCCGAGCTAC 
ATGCGCGCCGCGATTTCCCTCGGCTGCCACCCGTTCGCCAGCTTCTGGCGGGTGTATTTCCCACAGACCGTC 
GCGGGCGTCGGCGCCGGTTGCCTGCTGGTGTTCATCCTGTCCATCGGCTACTACATCACCCCGGCGCTGCTG 
GGCAGCCCGAACGACCAGATGGTCAGCTACTTCGTCGCCTTCTATACCAACAGCACCATCAACTGGGGCATG 
GCCACCGCCCTCGGCGGCCTGCTGCTGCTCGCTACCCTGGTGCTCTACGTCGTCTACAGCTGGCTGGTGGGC 
GCCAGCCGCCTGCGCCTGGGATAG