ViewGene

Locus Name:
GeneID:
Location:

GeneID:1419
TrivialName: PA14_70310
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70310
PAO1 Ortholog Locus:PA5326
Sequence Length:1209
Protein Length:402
Start: 6271184
Stop: 6269976
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08711.1|AE004945_5 (AE004945) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 400/402 (99%), Positives = 402/402 (100%)
Sequence:
ATGCGTCCCGCCGACCGTGGCGGGCCGTACGACGACTATTTCCGCGCGCTGAACCGCGAACTCAAGGCCAAT
GGCCCGATGTGCCCGGTGCTGCTCATCGACCTCGATCGCCTGGACCACAACATCGATGTGGTGATGCGTTCG
GTCCGCCGCGGCGGCAAGCATCTGCGGCTGGTGGAGAAGTCGCTGCCCTCGCCCGGCCTGCTGGCGTACATC
GCCAGGCGCGCCGGCACCCGGCGGCTGATGTCCTTCCACCAACCGTTCCTCAACCACGACGCGGTCGCTTTT
GCGGATGCCGACATCCTCCTTGGCAAGCCGTTGCCGGTGCGTTCGGCGGAACTGTTCTACCGCGAGCACAAG
GGTGCGTTCGACCCGGCGCGGCAGCTGCAATGGCTGATCGATACGCCGCAGCGCTTGCGTCAGTACCTGGCG
CTGGCCCAAGGGCTGGGGACCCGGATGCGCGTCAACATCGAACTGGACGTCGGCCTGCATCGCGGCGGGGTG
GCCGACCAGGCCGCGCTGGGTGAATTGCTGGCGCTGATCGCGGCGCATCCGCAGCACCTGGAGTTCGCCGGC
TTCATGGGCTACGACCCCTTCGTCGGAATGGGCGTGCCGGGCATCCTCGGTTCGCCCGAGGAGCTGTTCGCC
AAGGTCATGGCGCTCTACCAGGGACATGTCGACTTCGCCCGCCAGCGCTTCGCCGCGCTGTGGACGCCACAA
CTGACCCTGAATACCGCCGGCAGCCCCAGCTATCGCATGCACGAGAAGGAAACGCTGAGCAGCGAGGTCTCG
GTGGGCACCGCCATGCTCAAGCCGAGCCACTACGACCTGGCGTCCCTGGCCGAGCATGTGCCGGCCGTCTAC
ATCGCCACGCCGGTACTCAAGAGCACCGGCGCGGTGCAGATCCCGGCGCTGGACGGCAAGTCGCGGCTGTTT
TCCTGGTGGGACCCCAACCAGCGCGGCACCTTCTTCATCTACGGCGGCAACTGGATGGCCGACTTCGCCTCG
CCCGAGGGACTGCGCAGCAACGGCATCTACGGGCGCAGCTCGAACCAGGAAATGGTCAACGGCTCGCCTTCG
GTGGGCCTGGAGGTGGACGACCAGGTCTTCCTGCGGCCGACCCAGAGCGAGGCGGTGCTGCTGCAATTCGGC
GACCTGCTGGCGCTGCGCGGCGGGCGGATCGTCGAGCGCTGGCCGGTTTACGCCTAG
Translation:
MRPADRGGPYDDYFRALNRELKANGPMCPVLLIDLDRLDHNIDVVMRSVRRGGKHLRLVEKSLPSPGLLAYI
ARRAGTRRLMSFHQPFLNHDAVAFADADILLGKPLPVRSAELFYREHKGAFDPARQLQWLIDTPQRLRQYLA
LAQGLGTRMRVNIELDVGLHRGGVADQAALGELLALIAAHPQHLEFAGFMGYDPFVGMGVPGILGSPEELFA
KVMALYQGHVDFARQRFAALWTPQLTLNTAGSPSYRMHEKETLSSEVSVGTAMLKPSHYDLASLAEHVPAVY
IATPVLKSTGAVQIPALDGKSRLFSWWDPNQRGTFFIYGGNWMADFASPEGLRSNGIYGRSSNQEMVNGSPS
VGLEVDDQVFLRPTQSEAVLLQFGDLLALRGGRIVERWPVYA*
AnnotationID:1428GeneID:1419
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 14:02:24
Gene Name:
Confidence Code:3
GeneProduct:putative amino acid aldolase
Cell Localization:()
Synonyms:PA5326
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:putative racemase
Functional Category Confidence Code:5
COGs:COG3616,pfam01168
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG3616, Predicted amino acid aldolase or racemase 
[Amino acid transport and metabolism]
CD-Length = 368 residues,  98.9% aligned
Score =  286 bits (734), Expect = 3e-78
Identities = 126/389 (32%), Positives = 154/389 (39%), Gaps = 26/389 (6%)

pfam01168, Ala_racemase_N, Alanine racemase, N-terminal domain.
CD-Length = 227 residues, 100.0% aligned
Score = 99.6 bits (248), Expect = 6e-22
Identities = 57/248 (22%), Positives = 88/248 (35%), Gaps = 21/248 (8%)

Genomic Context:
Comment:
ReferenceID:2841
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19986
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34756
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1419_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1419

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2577 PA5326_tr translation of PA5326 402 99.50 99.99 0 2090.0
81253 gb|AAG08711.1|AE004945_5 (AE004945) hypothetical protein PA5326 [Pseudomonas aeruginosa PAO1] 402 99.50 99.99 0 2090.0
81254 gb|AAQ58716.1| (AE016913) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] 414 46.61 59.42 23 855.0
81255 dbj|BAB53811.1| (AP003013) hypothetical protein [Mesorhizobium loti] 411 40.14 53.77 39 651.0
GC ORFID: 44421How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5326Glimmer Score:
Start: 5534873Stop: 5533665
Length: 1209
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA5326 translation of PA5326Homolog Bit Score 809.0
Other Homologs: t_PA5326 (ORF: GLIMMER)
GC ORF Sequence
ATGCGTCCCGCCGACCGTGGCGGGCCGTACGACGACTATTTCCGCGCGCTGAACCGCGAACTCAAGGCCAAT
GGCCCGATGTGCCCGGTGCTGCTCATCGACCTCGATCGCCTGGACCACAACATCGATGTGGTGATGCGTTCG
GTCCGCCGCGGCGGCAAGCATCTGCGGCTGGTGGAGAAGTCGCTGCCCTCGCCCGGCCTGCTGGCGTACATC
GCCAGGCGCGCCGGCACCCGGCGGCTGATGTCCTTCCACCAACCGTTCCTCAACCACGACGCGGTCGCTTTT
GCGGATGCCGACATCCTCCTTGGCAAGCCGTTGCCGGTGCGTTCGGCGGAACTGTTCTACCGCGAGCACAAG
GGTGCGTTCGACCCGGCGCGGCAGCTGCAATGGCTGATCGATACGCCGCAGCGCTTGCGTCAGTACCTGGCG
CTGGCCCAAGGGCTGGGGACCCGGATGCGCGTCAACATCGAACTGGACGTCGGCCTGCATCGCGGCGGGGTG
GCCGACCAGGCCGCGCTGGGTGAATTGCTGGCGCTGATCGCGGCGCATCCGCAGCACCTGGAGTTCGCCGGC
TTCATGGGCTACGACCCCTTCGTCGGAATGGGCGTGCCGGGCATCCTCGGTTCGCCCGAGGAGCTGTTCGCC
AAGGTCATGGCGCTCTACCAGGGACATGTCGACTTCGCCCGCCAGCGCTTCGCCGCGCTGTGGACGCCACAA
CTGACCCTGAATACCGCCGGCAGCCCCAGCTATCGCATGCACGAGAAGGAAACGCTGAGCAGCGAGGTCTCG
GTGGGCACCGCCATGCTCAAGCCGAGCCACTACGACCTGGCGTCCCTGGCCGAGCATGTGCCGGCCGTCTAC
ATCGCCACGCCGGTACTCAAGAGCACCGGCGCGGTGCAGATCCCGGCGCTGGACGGCAAGTCGCGGCTGTTT
TCCTGGTGGGACCCCAACCAGCGCGGCACCTTCTTCATCTACGGCGGCAACTGGATGGCCGACTTCGCCTCG
CCCGAGGGACTGCGCAGCAACGGCATCTACGGGCGCAGCTCGAACCAGGAAATGGTCAACGGCTCGCCTTCG
GTGGGCCTGGAGGTGGACGACCAGGTCTTCCTGCGGCCGACCCAGAGCGAGGCGGTGCTGCTGCAATTCGGC
GACCTGCTGGCGCTGCGCGGCGGGCGGATCGTCGAGCGCTGGCCGGTTTACGCCTAG