ViewGene
Locus Name:
GeneID:
Location:

GeneID:1415
TrivialName: PA14_69420
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69420
PAO1 Ortholog Locus:PA5257
Sequence Length:1239
Protein Length:412
Start: 6191802
Stop: 6190564
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08642.1|AE004938_4 (AE004938) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 412/412 (100%), Positives = 412/412 (100%)
Sequence:
ATGAGACGCATCTACCTCCTGGTTCTGGCGGTGGTGCTGGTCGCCACGCTGGTTGGGCTGGCGATCTCCGAG
CAGGCCGGCTATGTGCTGATCGCCTACAAGAGCTTCCGTTACGAATCCAGCCTGTGGTCGTTCCTCGCCCTG
CTGGCGGTGGTCTGGCTGCTGGTGGTGCTGGTGCGCCTGGTCCTGCGCCTGCTCGGCAGCTCGGGGCGGGTG
GTCAACCCCTGGTCGCGCTACAACCGCCGGCGTCGCGTGCAGATGGCCGAGCACAGCGGCCTGCGCGATCTC
GGCGAAGGCAACTGGCCGCAGGCACTGCGTCACTTGCGGCGGGCGGCGGAGATGGGCGAGCGGCCGCTGATG
CATTACCTCGGCGCGGCGCGGGCCGCCAACGAACTCGAACGCTACGACGAGGCCGACGACCTGCTGAACCGG
GCTCGCGAGCGCGAGCCGGACGCCCAATTGCTGGTCGGCCTGACCCGTGCGCAACTGCTGATCAATCGCGGC
GACTACCCGCAGGCACGCAATACCCTTGAAGAGCTGCACGGGCTCCAGCCGCAGCACCGCACGGTATTGCGG
CTGATGCAGCAGCTGTACGTCACCCAGCACGACTGGCAGGCCCTTTGCGTCCTGCTGCCGGAGCTGCGCAAG
GAGCGTGTGCTGAAGGATTCCGAACTGCGCGACCTCGAACGCCGTGCCTGGGTGGCTTCCTTGCAGGAAGCC
GGCGAGCGTGGACTGAACGAGGGCGAGACGGCGTTGCAGCCGCTGACCCAGCGCTGGCAGAACGTGCCTTCG
GCGCTGCGTGCAGACCCGGCGATCGTCGCGGGCTATGCCGCCCAACTGCTTCGCCTGGGCGCCGAGGAAGAG
GCTGAAGAAGTCCTCCGCCATGCGCTCAAGCAAGGCTTCGACGCGACCCTGGTGCAACTCTACGGGCAGGTG
CGCGGGCGCGATCCGGGCAAGCAATTGCAGGCCGCGGAAGGTTGGCTCAAGGAACATCCGAACGATCCCGGC
CTGCTGCTGACCCTGGGGCGCCTGTGCCTGATCAACAAGCTCTGGGGCAAGGCCCGGGAATACCTGGAGGCC
AGCCTGAGCTTCCAGCGCAGTGCCGAGACCTGCGCCGAGCTGGGACGCCTGCTGGCGCAGCTCGGCGAGGTC
GAGCGCAGCAACCAGTTGTTCCAGGAGGGCCTGGTCCTGCTCGATCGGCGTACTCCGGGGCTGCCCGTGGTG
GTGGCGGGCATTTGA
Translation:
MRRIYLLVLAVVLVATLVGLAISEQAGYVLIAYKSFRYESSLWSFLALLAVVWLLVVLVRLVLRLLGSSGRV
VNPWSRYNRRRRVQMAEHSGLRDLGEGNWPQALRHLRRAAEMGERPLMHYLGAARAANELERYDEADDLLNR
AREREPDAQLLVGLTRAQLLINRGDYPQARNTLEELHGLQPQHRTVLRLMQQLYVTQHDWQALCVLLPELRK
ERVLKDSELRDLERRAWVASLQEAGERGLNEGETALQPLTQRWQNVPSALRADPAIVAGYAAQLLRLGAEEE
AEEVLRHALKQGFDATLVQLYGQVRGRDPGKQLQAAEGWLKEHPNDPGLLLTLGRLCLINKLWGKAREYLEA
SLSFQRSAETCAELGRLLAQLGEVERSNQLFQEGLVLLDRRTPGLPVVVAGI*
AnnotationID:1424GeneID:1415
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 07:07:44
Gene Name:
Confidence Code:3
GeneProduct:putative enzyme of heme biosynthesis
Cell Localization:()
Synonyms:hemY
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3071,pfam07219
Secondary Functional Category(ies):coenyme metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO53685.1| (AE016856) hemY protein, putative [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 414

 Score =  441 bits (1135), Expect = e-123
 Identities = 230/408 (56%), Positives = 291/408 (71%), Gaps = 1/408 (0%)

>gb|AAN65822.1|AE016210_10 (AE016774) hemY protein [Pseudomonas putida KT2440]
          Length = 412

 Score =  414 bits (1064), Expect = e-115
 Identities = 217/407 (53%), Positives = 287/407 (70%), Gaps = 1/407 (0%)








 
Structural Features:
COG3071, HemY, Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
CD-Length = 400 residues, 100.0% aligned
Score =  395 bits (1016), Expect = 5e-111
Identities = 175/408 (42%), Positives = 240/408 (58%), Gaps = 8/408 (1%)

pfam07219, HemY_N, HemY protein N-terminus. 
CD-Length = 134 residues, 100.0% aligned
Score =  129 bits (326), Expect = 6e-31
Identities = 49/134 (36%), Positives = 77/134 (57%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2833




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19978




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34825




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1415_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1415
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2571
                           PA5257_tr
                           translation of PA5257
                           412
                           99.99
                           99.99
                           0
                           2091.0
     

     
     
81152
                           gb|AAG08642.1|AE004938_4
                           (AE004938) hypothetical protein PA5257 [Pseudomonas aeruginosa PAO1]
                           412
                           99.99
                           99.99
                           0
                           2091.0
     

     
     
81153
                           gb|AAO53685.1|
                           (AE016856) hemY protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           415
                           55.66
                           70.60
                           4
                           1133.0
     

     
     
81154
                           gb|AAN65822.1|AE016210_10
                           (AE016774) hemY protein [Pseudomonas putida KT2440]
                           418
                           54.06
                           69.61
                           12
                           1067.0
     

     






      

          
GC ORFID: 44417How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5257Glimmer Score: 

          
Start: 5455489Stop: 5454251

          
Length: 1239


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5257 translation of PA5257Homolog Bit Score 810.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4069 (ORF: BLASTX 439.0), t_PA5257 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGACGCATCTACCTCCTGGTTCTGGCGGTGGTGCTGGTCGCCACGCTGGTTGGGCTGGCGATCTCCGAG 
CAGGCCGGCTATGTGCTGATCGCCTACAAGAGCTTCCGTTACGAATCCAGCCTGTGGTCGTTCCTCGCCCTG 
CTGGCGGTGGTCTGGCTGCTGGTGGTGCTGGTGCGCCTGGTCCTGCGCCTGCTCGGCAGCTCGGGGCGGGTG 
GTCAACCCCTGGTCGCGCTACAACCGCCGGCGTCGCGTGCAGATGGCCGAGCACAGCGGCCTGCGCGATCTC 
GGCGAAGGCAACTGGCCGCAGGCACTGCGTCACTTGCGGCGGGCGGCGGAGATGGGCGAGCGGCCGCTGATG 
CATTACCTCGGCGCGGCGCGGGCCGCCAACGAACTCGAACGCTACGACGAGGCCGACGACCTGCTGAACCGG 
GCTCGCGAGCGCGAGCCGGACGCCCAATTGCTGGTCGGCCTGACCCGTGCGCAACTGCTGATCAATCGCGGC 
GACTACCCGCAGGCACGCAATACCCTTGAAGAGCTGCACGGGCTCCAGCCGCAGCACCGCACGGTATTGCGG 
CTGATGCAGCAGCTGTACGTCACCCAGCACGACTGGCAGGCCCTTTGCGTCCTGCTGCCGGAGCTGCGCAAG 
GAGCGTGTGCTGAAGGATTCCGAACTGCGCGACCTCGAACGCCGTGCCTGGGTGGCTTCCTTGCAGGAAGCC 
GGCGAGCGTGGACTGAACGAGGGCGAGACGGCGTTGCAGCCGCTGACCCAGCGCTGGCAGAACGTGCCTTCG 
GCGCTGCGTGCAGACCCGGCGATCGTCGCGGGCTATGCCGCCCAACTGCTTCGCCTGGGCGCCGAGGAAGAG 
GCTGAAGAAGTCCTCCGCCATGCGCTCAAGCAAGGCTTCGACGCGACCCTGGTGCAACTCTACGGGCAGGTG 
CGCGGGCGCGATCCGGGCAAGCAATTGCAGGCCGCGGAAGGTTGGCTCAAGGAACATCCGAACGATCCCGGC 
CTGCTGCTGACCCTGGGGCGCCTGTGCCTGATCAACAAGCTCTGGGGCAAGGCCCGGGAATACCTGGAGGCC 
AGCCTGAGCTTCCAGCGCAGTGCCGAGACCTGCGCCGAGCTGGGACGCCTGCTGGCGCAGCTCGGCGAGGTC 
GAGCGCAGCAACCAGTTGTTCCAGGAGGGCCTGGTCCTGCTCGATCGGCGTACTCCGGGGCTGCCCGTGGTG 
GTGGCGGGCATTTGA