ViewGene
Locus Name:
GeneID:
Location:

GeneID:1414
TrivialName: PA14_60650
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60650
PAO1 Ortholog Locus:PA4583
Sequence Length:1215
Protein Length:404
Start: 5405096
Stop: 5406310
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07971.1|AE004872_2 (AE004872) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 402/404 (99%), Positives = 403/404 (99%)
Sequence:
ATGAAAGACATGAATATCCTCGAAGTGGCCGGCGGCAAGCCGATCAAGCTCTGGACCCAGGGCGTCCCGGTG
GAGGAGGAAGCGCGCCAGCAGTTGCTGAACACGGCGAAGATGCCCTTCATCTTCAAGCACCTGGCGGTGATG
CCTGACGTACACCTGGGCAAGGGCTCGACCATCGGTAGCGTGATCCCTACCCTCGGCGCGATCATCCCGGCC
GCGGTGGGCGTGGATATCGGCTGCGGAATGATCGCCGCGCGCACCTCGCTGGTCGCCGCCGACCTGCCGGAC
AACCTGCACGGCCTGCGCAGCGCCATCGAGCAGGCGGTACCCCACGGCAAGACCTTCGGCCGCCGCGACCGC
GGCGCCTGGCACGAGGTACCGGAGGCCGCCGACCAGGCCTGGAAGGCGCTCGCCGATCGCTTCAAGGCGATC
ACCGACAAGCACCCGAGGCTGGAGAAGACCAACAACCGCCAGCACCTGGGAACCCTCGGCACCGGCAACCAC
TTCATCGAGGTCTGCCTGGACGAGGCCGACCGCGTCTGGTTCATGCTGCACAGCGGTTCGCGCGGGGTCGGC
AACGCCATCGGCAACCTGTTCATCGAACTGGCCAAGGCGGACATGCGCCAGCACATCGCCAACCTGCCGGAC
AAGGACCTGGCCTACTTCGAGGAAGGCAGCCGGCACTTCGACGACTATGTGGAAGCGGTCGGCTGGGCCCAG
GATTTCGCCCGGCAGAACCGCGCGCTGATGATGCACGCGGTGATCGAGGCGGCGCGCCAGGTGATCCGCAAG
CCGTTCGAAGCCAACCTGGAGGCGGTCGATTGCCACCATAACTACGTGCAGAAGGAGCGCCACTTCGGCCAG
GAGGTACTGGTCACCCGCAAAGGCGCGGTGTCCGCGCAGAAGGGCCAGCTCGGCATCATTCCCGGCTCGATG
GGGGCGAAGAGCTTCATTGTCCGCGGCCTCGGCAACCAGGAAGCGTTCTGCTCGTGCAGCCACGGCGCCGGG
CGGACCATGAGCCGGACCAAGGCGAAGAAGGTCTTCAGCGTCGCCGACCAGGCCCGCGCCACCGCCCACGTC
GAATGCCGCAAGGACGCCGACGTGATCGACGAGATCCCGATGGCCTACAAGGACATCGACCGGGTCATGGAA
GCCCAGCGCGAGCTGGTGGAAGTGCTGCACACCCTGCGTCAGGTGGTGTGCGTGAAAGGATGA
Translation:
MKDMNILEVAGGKPIKLWTQGVPVEEEARQQLLNTAKMPFIFKHLAVMPDVHLGKGSTIGSVIPTLGAIIPA
AVGVDIGCGMIAARTSLVAADLPDNLHGLRSAIEQAVPHGKTFGRRDRGAWHEVPEAADQAWKALADRFKAI
TDKHPRLEKTNNRQHLGTLGTGNHFIEVCLDEADRVWFMLHSGSRGVGNAIGNLFIELAKADMRQHIANLPD
KDLAYFEEGSRHFDDYVEAVGWAQDFARQNRALMMHAVIEAARQVIRKPFEANLEAVDCHHNYVQKERHFGQ
EVLVTRKGAVSAQKGQLGIIPGSMGAKSFIVRGLGNQEAFCSCSHGAGRTMSRTKAKKVFSVADQARATAHV
ECRKDADVIDEIPMAYKDIDRVMEAQRELVEVLHTLRQVVCVKG*
AnnotationID:1423GeneID:1414
AnnotatorUID: diggins
Modification Date/Time: 2005-05-05 10:10:25
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4583
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD13752.1| (AL646058) RTCB PROTEIN [Ralstonia solanacearum]
          Length = 406

 Score =  671 bits (1730), Expect = 0.0
 Identities = 327/398 (82%), Positives = 356/398 (89%)

>gb|AAL22381.1| (AE008862) putative cytoplasmic protein [Salmonella typhimurium
           LT2]
          Length = 405

 Score =  578 bits (1489), Expect = e-164
 Identities = 277/393 (70%), Positives = 326/393 (82%), Gaps = 2/393 (0%)

>gb|AAN82636.1|AE016768_54 (AE016768) Protein rtcB [Escherichia coli CFT073]
          Length = 429

 Score =  570 bits (1468), Expect = e-162
 Identities = 279/397 (70%), Positives = 326/397 (82%), Gaps = 6/397 (1%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:2831




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19976




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31635




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1414_cdd.html


    		




 
URL:

















    ReferenceID:33115




  
Author/Investigator(s):
        Genschik P, Drabikowski K, Filipowicz W.





  
Title:
        Characterization of the Escherichia coli RNA 3'-terminal phosphate cyclase and its sigma54-regulated operon.




  
PubMed:
        9738023


MedLine:
        




    
Source:
J Biol Chem. 1998 Sep 25;273(39):25516-26.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9738023









           
Homologs By Global Alignment 

           

       



     
Gene ID:1414
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2570
                           PA4583_tr
                           translation of PA4583
                           404
                           99.50
                           99.75
                           0
                           2092.0
     

     
     
81131
                           gb|AAG07971.1|AE004872_2
                           (AE004872) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           404
                           99.50
                           99.75
                           0
                           2092.0
     

     
     
81132
                           emb|CAD13752.1|
                           (AL646058) RTCB PROTEIN [Ralstonia solanacearum]
                           406
                           80.54
                           87.93
                           2
                           1726.0
     

     
     
81133
                           gb|AAQ58712.2|
                           (AE016913) rtcb protein [Chromobacterium violaceum ATCC 12472]
                           406
                           79.55
                           86.94
                           2
                           1688.0
     

     
     
81134
                           emb|CAE16679.1|
                           (BX571873) Protein RtcB [Photorhabdus luminescens subsp. laumondii TTO1]
                           408
                           72.79
                           83.33
                           4
                           1587.0
     

     






      

          
GC ORFID: 44416How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4583Glimmer Score: 

          
Start: 4668776Stop: 4669990

          
Length: 1215


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4583 translation of PA4583Homolog Bit Score 810.0

          
Other Homologs:  t_PA4583 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAGACATGAATATCCTCGAAGTGGCCGGCGGCAAGCCGATCAAGCTCTGGACCCAGGGCGTCCCGGTG 
GAGGAGGAAGCGCGCCAGCAGTTGCTGAACACGGCGAAGATGCCCTTCATCTTCAAGCACCTGGCGGTGATG 
CCTGACGTACACCTGGGCAAGGGCTCGACCATCGGTAGCGTGATCCCTACCCTCGGCGCGATCATCCCGGCC 
GCGGTGGGCGTGGATATCGGCTGCGGAATGATCGCCGCGCGCACCTCGCTGGTCGCCGCCGACCTGCCGGAC 
AACCTGCACGGCCTGCGCAGCGCCATCGAGCAGGCGGTACCCCACGGCAAGACCTTCGGCCGCCGCGACCGC 
GGCGCCTGGCACGAGGTACCGGAGGCCGCCGACCAGGCCTGGAAGGCGCTCGCCGATCGCTTCAAGGCGATC 
ACCGACAAGCACCCGAGGCTGGAGAAGACCAACAACCGCCAGCACCTGGGAACCCTCGGCACCGGCAACCAC 
TTCATCGAGGTCTGCCTGGACGAGGCCGACCGCGTCTGGTTCATGCTGCACAGCGGTTCGCGCGGGGTCGGC 
AACGCCATCGGCAACCTGTTCATCGAACTGGCCAAGGCGGACATGCGCCAGCACATCGCCAACCTGCCGGAC 
AAGGACCTGGCCTACTTCGAGGAAGGCAGCCGGCACTTCGACGACTATGTGGAAGCGGTCGGCTGGGCCCAG 
GATTTCGCCCGGCAGAACCGCGCGCTGATGATGCACGCGGTGATCGAGGCGGCGCGCCAGGTGATCCGCAAG 
CCGTTCGAAGCCAACCTGGAGGCGGTCGATTGCCACCATAACTACGTGCAGAAGGAGCGCCACTTCGGCCAG 
GAGGTACTGGTCACCCGCAAAGGCGCGGTGTCCGCGCAGAAGGGCCAGCTCGGCATCATTCCCGGCTCGATG 
GGGGCGAAGAGCTTCATTGTCCGCGGCCTCGGCAACCAGGAAGCGTTCTGCTCGTGCAGCCACGGCGCCGGG 
CGGACCATGAGCCGGACCAAGGCGAAGAAGGTCTTCAGCGTCGCCGACCAGGCCCGCGCCACCGCCCACGTC 
GAATGCCGCAAGGACGCCGACGTGATCGACGAGATCCCGATGGCCTACAAGGACATCGACCGGGTCATGGAA 
GCCCAGCGCGAGCTGGTGGAAGTGCTGCACACCCTGCGTCAGGTGGTGTGCGTGAAAGGATGA