ViewGene
Locus Name:
GeneID:
Location:

GeneID:1413
TrivialName: PA14_29660
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29660
PAO1 Ortholog Locus:PA2662
Sequence Length:1194
Protein Length:397
Start: 2569612
Stop: 2570805
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06050.1|AE004695_3 (AE004695) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 394/397 (99%), Positives = 395/397 (99%)
Sequence:
GTGCAAGTGCTTGATCGTTCCAGGCTGATGGCCATACCGCCGATCTGGCGCCTGGGCTTCCGCCCGTTCTTC
CTCGGCGGCGCGCTGTTCGCGGTCCTCGCCATCGCGCTCTGGCTGGCGGCGCTGGCCGGGCTCTGGAGCGGC
TGGCAACCGGTCGGTGGCTGGCTGGCCTGGCATCGTCACGAAATGCTCTTCGGTTTCGGCGTGGCGATCATC
GCCGGCTTCCTGTTGACCGCCGTGCAGACCTGGACCGGCGTACCCGGCCTGCAGGGCAAACCCCTGGCCCTG
CTCGCCGGGCTCTGGCTGGCGGCGCGCCTGGCCTGGCTATTCGATGCGCCGCTGGCGCTGCTGCTGGTGCTG
CAACTGAGCTTCCTGCCGCTATTGGCCTGGGCTATCGGTCGCAGCCTGTGGCGGGTGCGGCAGAAGCGCAAT
TACCCGGTGGTGGGCCTGTTGCTGCTGTTGACCCTGGCCGACGCCCTGGTCCTGCTCGGCCTGTTCGAGGGC
AACGACGACTGGCAACGGCGTGCCTCCATCGCCGCGCTATGGCTGATCGCCGGGATGATGAACCTCATCGGC
GGGCGGGTGATCCCGTTCTTCACCCAGCGCGGTCTCGGCCGTCAGCAGCAGGTGCCGGCGATCGCCTGGCTG
GACAATGGCATCCTGCTGGGCTGCGTGCTGGTGGCGCTGCTCACCGCCGCGGGCGTCACGGCGCAGCCGACG
CCCTGGCTTGCAGGACTGTTCGCCGCCCTCGGCGGTGCGCAACTGTGGCGCCTGTGGCGTTGGCGCGATCGC
GGCATCTGGCAGGTGCCGCTGCTCTGGTCGCTGCACCTGGCGTATTTCTGGATCGCCGTGGCGCCGCTCGGC
ATAGCGCTCTGGAGCCTGGGCCTGGCGCTGGCGCCGAGCCAGGCGCTGCACGCGCTGGCGGTGGGCGGCATG
GGCGGGTTGATCCTGGCGATGCTGGCACGGGTCACTCTCGGCCATACCGGTCGCGCGCTGCAACCGCCGGCA
GCGATGCCCTGGGCTTTCGCCCTGCTCAATCTCGGCTGCGCGGCGCGGGTGTTCCTGCCCAGCCTGTTGCCG
GCGAACTGGGCGCTGCCCCTGGCAGGCGGACTGTGGGCTTTGGCGTTCCTGCTATTCGCCTGGTGCTACGCG
CCGATGCTGTGTCGTCCGCGGGTCGACGGCCATCCCGGTTGA
Translation:
MQVLDRSRLMAIPPIWRLGFRPFFLGGALFAVLAIALWLAALAGLWSGWQPVGGWLAWHRHEMLFGFGVAII
AGFLLTAVQTWTGVPGLQGKPLALLAGLWLAARLAWLFDAPLALLLVLQLSFLPLLAWAIGRSLWRVRQKRN
YPVVGLLLLLTLADALVLLGLFEGNDDWQRRASIAALWLIAGMMNLIGGRVIPFFTQRGLGRQQQVPAIAWL
DNGILLGCVLVALLTAAGVTAQPTPWLAGLFAALGGAQLWRLWRWRDRGIWQVPLLWSLHLAYFWIAVAPLG
IALWSLGLALAPSQALHALAVGGMGGLILAMLARVTLGHTGRALQPPAAMPWAFALLNLGCAARVFLPSLLP
ANWALPLAGGLWALAFLLFAWCYAPMLCRPRVDGHPG*
AnnotationID:1422GeneID:1413
AnnotatorUID: diggins
Modification Date/Time: 2005-06-09 14:02:50
Gene Name:
Confidence Code:3
GeneProduct:putative membraine protein
Cell Localization:()
Synonyms:PA2662
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:putative dehydrogenase
Functional Category Confidence Code:5
COGs:pfam05940,COG3213
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68448.1|AE016477_7 (AE016784) membrane protein, putative [Pseudomonas putida KT2440]
          Length = 393

 Score =  394 bits (1012), Expect = e-109
 Identities = 205/383 (53%), Positives = 254/383 (66%), Gaps = 3/383 (0%)







 
Structural Features:
pfam05940, NnrS, NnrS protein.
CD-Length = 383 residues, 100.0% aligned
Score =  294 bits (754), Expect = 1e-80
Identities = 194/388 (50%), Positives = 227/388 (58%), Gaps = 12/388 (3%)

COG3213, NnrS, Uncharacterized protein involved in response to NO 
[Inorganic ion transport and metabolism].
CD-Length = 396 residues, 100.0% aligned
Score =  292 bits (750), Expect = 4e-80
Identities = 200/406 (49%), Positives = 242/406 (59%), Gaps = 20/406 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14347




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19974




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36320




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1413_cdd.hmlt


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1413
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2569
                           PA2662_tr
                           translation of PA2662
                           397
                           99.24
                           99.49
                           0
                           2092.0
     

     
     
81124
                           gb|AAG06050.1|AE004695_3
                           (AE004695) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           397
                           98.99
                           99.49
                           0
                           2089.0
     

     
     
81125
                           emb|CAA98157.1|
                           (Z73914) ORF396 protein [Pseudomonas stutzeri]
                           397
                           59.69
                           70.02
                           1
                           1214.0
     

     
     
81126
                           gb|AAN68448.1|AE016477_7
                           (AE016784) membrane protein, putative [Pseudomonas putida KT2440]
                           405
                           51.11
                           63.20
                           20
                           1015.0
     

     
     
81127
                           gb|AAN55827.1|AE015719_9
                           (AE015719) conserved hypothetical protein [Shewanella oneidensis MR-1]
                           418
                           42.34
                           56.45
                           49
                           761.0
     

     






      

          
GC ORFID: 44415How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2662Glimmer Score: 

          
Start: 2384314Stop: 2383121

          
Length: 1194


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2662 translation of PA2662Homolog Bit Score 810.0

          
Other Homologs:  t_PA2662 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCAAGTGCTTGATCGTTCCAGGCTGATGGCCATACCGCCGATCTGGCGCCTGGGCTTCCGCCCGTTCTTC 
CTCGGCGGCGCGCTGTTCGCGGTCCTCGCCATCGCGCTCTGGCTGGCGGCGCTGGCCGGGCTCTGGAGCGGC 
TGGCAACCGGTCGGTGGCTGGCTGGCCTGGCATCGTCACGAAATGCTCTTCGGTTTCGGCGTGGCGATCATC 
GCCGGCTTCCTGTTGACCGCCGTGCAGACCTGGACCGGCGTACCCGGCCTGCAGGGCAAACCCCTGGCCCTG 
CTCGCCGGGCTCTGGCTGGCGGCGCGCCTGGCCTGGCTATTCGATGCGCCGCTGGCGCTGCTGCTGGTGCTG 
CAACTGAGCTTCCTGCCGCTATTGGCCTGGGCTATCGGTCGCAGCCTGTGGCGGGTGCGGCAGAAGCGCAAT 
TACCCGGTGGTGGGCCTGTTGCTGCTGTTGACCCTGGCCGACGCCCTGGTCCTGCTCGGCCTGTTCGAGGGC 
AACGACGACTGGCAACGGCGTGCCTCCATCGCCGCGCTATGGCTGATCGCCGGGATGATGAACCTCATCGGC 
GGGCGGGTGATCCCGTTCTTCACCCAGCGCGGTCTCGGCCGTCAGCAGCAGGTGCCGGCGATCGCCTGGCTG 
GACAATGGCATCCTGCTGGGCTGCGTGCTGGTGGCGCTGCTCACCGCCGCGGGCGTCACGGCGCAGCCGACG 
CCCTGGCTTGCAGGACTGTTCGCCGCCCTCGGCGGTGCGCAACTGTGGCGCCTGTGGCGTTGGCGCGATCGC 
GGCATCTGGCAGGTGCCGCTGCTCTGGTCGCTGCACCTGGCGTATTTCTGGATCGCCGTGGCGCCGCTCGGC 
ATAGCGCTCTGGAGCCTGGGCCTGGCGCTGGCGCCGAGCCAGGCGCTGCACGCGCTGGCGGTGGGCGGCATG 
GGCGGGTTGATCCTGGCGATGCTGGCACGGGTCACTCTCGGCCATACCGGTCGCGCGCTGCAACCGCCGGCA 
GCGATGCCCTGGGCTTTCGCCCTGCTCAATCTCGGCTGCGCGGCGCGGGTGTTCCTGCCCAGCCTGTTGCCG 
GCGAACTGGGCGCTGCCCCTGGCAGGCGGACTGTGGGCTTTGGCGTTCCTGCTATTCGCCTGGTGCTACGCG 
CCGATGCTGTGTCGTCCGCGGGTCGACGGCCATCCCGGTTGA