ViewGene
Locus Name:
GeneID:
Location:

GeneID:1412
TrivialName: PA14_32330
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32330
PAO1 Ortholog Locus:PA2500
Sequence Length:1227
Protein Length:408
Start: 2809898
Stop: 2808672
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05888.1|AE004677_5 (AE004677) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 406/408 (99%), Positives = 407/408 (99%)
Sequence:
ATGAGCGCGCGAATCCCTTCCGGCGGCCAGGCCGCCACCGGCGTCGGCGCGGCGGAGGTCAGTTGGGTCGGC
CTGCTGGTAATCTTCTGCCTTGGCATCAACCTGCGACCGATCCTCACCGGCATCGGCCCGCTGCTCGAGGAA
ATCACCGCCGGCACCGGTCTCGGCTTCCAGGGCGCGTCGCTGCTGACGGTGTTGCCGGTGCTCTGCATGGGC
CTGGTGGCGCTGTTCCTGCCCTGGCTCGGGCGCTGGCTGGCCGAGCACCGCGGCATCGTCTGCGGACTGCTG
GCCATCGCCGCGGCCTGCCTCTGGCGCCTGGAACTGGATAGCGGGCTGGCGCTGATCGCCAGTGCCGCGCTG
GCCGGCAGCGGCGTGGCGATCATCCAGGCGCTGGTACCGGGCGTGGTCAAGCGCTGGTTCCCGAGGCGGGTC
CCGGCGGCGATGGGCCTCTACTCGGCCTCGCTGATGGCCGGCGGCGGAACCGCGGCGGTGCTCAGCCCGCGG
ATCGCCGAACACTTCTCCAACTGGCAGGCCGGCCTCGGCGCCTGGGCCGTACCGGCCCTGCTGGCGCTGCTG
CTGTGGATGTTCGCGCGGCCAAGGGAGGTGCTGCCGAGCGCTGGCGAGGGGCCGGTCCGGCACTTCTTCGGC
AATCGCCGTGGCTGGCTGCTGGCGGTGTATTTCGGGTTGATCAACGGCGGCTACACCAGCATGGTGGCCTGG
TTGCCGGTGTACTACCGCCAGCTCGGCTGGAGCGCCCAGGACAGCGGCGGGCTGGTCGGGATCATGACCATC
TTCCAGGTGCTCGCCGCGCTCAGCGTGCCGCTGCTGATTCGCCGCCGCCTCGACCGCCGGCCCTGGCTGCTG
GCCGCGCTGCTGGTCCAGCTCGGCGGCTTCTGCGGCCTGCTGCTGATGCCGCTGCAGCACGCGGCGCTGTGG
GTGGCGTTGATCGGCTACGGCCTGGGCGCCTGCTTCGCCCTCAGCCTGACCCTGACCCTCGACCACCTCCAC
GAGCCGCGTGCGGCGGGAAGCCTGGCGGCCTTCGTGCAAGGCATCGGCTTCATCATCACCGGCATCGTGCCC
TACCTGACCGGCTGGCTGCGCGACGCCACCGGCAGCTTCCAGGCCTCCTGGCTGCTGCTCGCGGCGAGCGTG
GTGGCGATGTTGCTGGTGACCCTGCGCTTCGCCCCGTCCGGCTATGCCCGGGCCATGGGCGATACGCGCGAC
TGA
Translation:
MSARIPSGGQAATGVGAAEVSWVGLLVIFCLGINLRPILTGIGPLLEEITAGTGLGFQGASLLTVLPVLCMG
LVALFLPWLGRWLAEHRGIVCGLLAIAAACLWRLELDSGLALIASAALAGSGVAIIQALVPGVVKRWFPRRV
PAAMGLYSASLMAGGGTAAVLSPRIAEHFSNWQAGLGAWAVPALLALLLWMFARPREVLPSAGEGPVRHFFG
NRRGWLLAVYFGLINGGYTSMVAWLPVYYRQLGWSAQDSGGLVGIMTIFQVLAALSVPLLIRRRLDRRPWLL
AALLVQLGGFCGLLLMPLQHAALWVALIGYGLGACFALSLTLTLDHLHEPRAAGSLAAFVQGIGFIITGIVP
YLTGWLRDATGSFQASWLLLAASVVAMLLVTLRFAPSGYARAMGDTRD*
AnnotationID:1421GeneID:1412
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 16:04:26
Gene Name:
Confidence Code:3
GeneProduct:putative cyanate permease
Cell Localization:()
Synonyms:PA2500
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2807
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69346.1|AE016572_2 (AE016788) cyanate transporter, putative [Pseudomonas putida
           KT2440]
          Length = 398

 Score =  503 bits (1295), Expect = e-142
 Identities = 248/381 (65%), Positives = 292/381 (76%)

>gb|AAG54690.1|AE005213_6 (AE005213) cyanate transport [Escherichia coli O157:H7 EDL933]
          Length = 384

 Score =  334 bits (857), Expect = 5e-91
 Identities = 174/377 (46%), Positives = 237/377 (62%), Gaps = 4/377 (1%)








 
Structural Features:
COG2807, CynX, Cyanate permease [Inorganic ion transport and metabolism]
CD-Length = 395 residues,  98.2% aligned
Score =  337 bits (867), Expect = 9e-94
Identities = 154/389 (39%), Positives = 212/389 (54%), Gaps = 3/389 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2827




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19972




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33051




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1412_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1412
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2567
                           PA2500_tr
                           translation of PA2500
                           408
                           99.50
                           99.75
                           0
                           2092.0
     

     
     
81114
                           gb|AAG05888.1|AE004677_5
                           (AE004677) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           408
                           99.50
                           99.75
                           0
                           2092.0
     

     
     
81115
                           gb|AAN69346.1|AE016572_2
                           (AE016788) cyanate transporter, putative [Pseudomonas putida KT2440]
                           417
                           59.95
                           70.50
                           28
                           1284.0
     

     
     
81116
                           gb|AAG54690.1|AE005213_6
                           (AE005213) cyanate transport [Escherichia coli O157:H7 EDL933]
                           415
                           42.16
                           57.59
                           38
                           852.0
     

     
     
81117
                           dbj|BAB33817.1|
                           (AP002551) cyanate transport [Escherichia coli O157:H7]
                           415
                           42.16
                           57.59
                           38
                           852.0
     

     






      

          
GC ORFID: 44414How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2500Glimmer Score: 

          
Start: 2144026Stop: 2145252

          
Length: 1227


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2500 translation of PA2500Homolog Bit Score 810.0

          
Other Homologs:  psyr_15may02_Scaffold9_revised_gene8021 (ORF: BLASTX 301.0), t_PA0273 (ORF: BLASTX 283.0), t_PA2500 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGCGCGAATCCCTTCCGGCGGCCAGGCCGCCACCGGCGTCGGCGCGGCGGAGGTCAGTTGGGTCGGC 
CTGCTGGTAATCTTCTGCCTTGGCATCAACCTGCGACCGATCCTCACCGGCATCGGCCCGCTGCTCGAGGAA 
ATCACCGCCGGCACCGGTCTCGGCTTCCAGGGCGCGTCGCTGCTGACGGTGTTGCCGGTGCTCTGCATGGGC 
CTGGTGGCGCTGTTCCTGCCCTGGCTCGGGCGCTGGCTGGCCGAGCACCGCGGCATCGTCTGCGGACTGCTG 
GCCATCGCCGCGGCCTGCCTCTGGCGCCTGGAACTGGATAGCGGGCTGGCGCTGATCGCCAGTGCCGCGCTG 
GCCGGCAGCGGCGTGGCGATCATCCAGGCGCTGGTACCGGGCGTGGTCAAGCGCTGGTTCCCGAGGCGGGTC 
CCGGCGGCGATGGGCCTCTACTCGGCCTCGCTGATGGCCGGCGGCGGAACCGCGGCGGTGCTCAGCCCGCGG 
ATCGCCGAACACTTCTCCAACTGGCAGGCCGGCCTCGGCGCCTGGGCCGTACCGGCCCTGCTGGCGCTGCTG 
CTGTGGATGTTCGCGCGGCCAAGGGAGGTGCTGCCGAGCGCTGGCGAGGGGCCGGTCCGGCACTTCTTCGGC 
AATCGCCGTGGCTGGCTGCTGGCGGTGTATTTCGGGTTGATCAACGGCGGCTACACCAGCATGGTGGCCTGG 
TTGCCGGTGTACTACCGCCAGCTCGGCTGGAGCGCCCAGGACAGCGGCGGGCTGGTCGGGATCATGACCATC 
TTCCAGGTGCTCGCCGCGCTCAGCGTGCCGCTGCTGATTCGCCGCCGCCTCGACCGCCGGCCCTGGCTGCTG 
GCCGCGCTGCTGGTCCAGCTCGGCGGCTTCTGCGGCCTGCTGCTGATGCCGCTGCAGCACGCGGCGCTGTGG 
GTGGCGTTGATCGGCTACGGCCTGGGCGCCTGCTTCGCCCTCAGCCTGACCCTGACCCTCGACCACCTCCAC 
GAGCCGCGTGCGGCGGGAAGCCTGGCGGCCTTCGTGCAAGGCATCGGCTTCATCATCACCGGCATCGTGCCC 
TACCTGACCGGCTGGCTGCGCGACGCCACCGGCAGCTTCCAGGCCTCCTGGCTGCTGCTCGCGGCGAGCGTG 
GTGGCGATGTTGCTGGTGACCCTGCGCTTCGCCCCGTCCGGCTATGCCCGGGCCATGGGCGATACGCGCGAC 
TGA