ViewGene
Locus Name:
GeneID:
Location:

GeneID:1410
TrivialName: PA14_56480
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56480
PAO1 Ortholog Locus:PA4344
Sequence Length:1221
Protein Length:406
Start: 5038040
Stop: 5036820
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07732.1|AE004850_10 (AE004850) probable hydrolase [Pseudomonas aeruginosa PAO1]
Identities = 405/406 (99%), Positives = 405/406 (99%)
Sequence:
ATGGCTCGACATCGACACATCGTGGCCTGGCTCGAGGAGGTCGCCGACGACCTGCGTAGCCTGCGCCAGGAC
ATCCACGCCCATCCCGAACTGGGCTTCGAGGAGCGACGCACCGCCGCGCTGGTCGCCGAGTGCCTGCGCGGC
TGGGGCTACGAAGTGCACGAAGGGATCGGCCGCACCGGCGTGGTCGGCGTCCTCCGCCAGGGCGACGGTACG
CGGCGGCTCGGCCTGCGGGCGGACATGGATGCGCTGCCGATCGTCGAGGCCACGGGGCTCGGCTACAGCAGC
TGCCACGGCGGGCGCATGCACGCCTGCGGCCACGACGGACACACCGCGATGCTGCTCGGCGCGGCACGCTAC
CTGGCGGCGACGCGGCGTTTCGACGGCACCCTGGTACTGATTTTCCAGCCCGCCGAGGAAGGCCAGGGCGGC
GCCGAGGCGATGCTCGCCGACGGGCTGCTGGAGCGCTTTCCCTGCGATGCGCTGTTCGGCATGCACAACATG
CCGGGACTGGAGGCCGGGCACCTGGGCTTCCGCGCGGGACCGATGATGGCTTCCCAGGACCTGCTGAGCGTC
ACCCTGGAGGGCGTCGGTGGCCACGGTTCGATGCCGCACTTGAGCGTCGATCCGCTGCTCGCCGCGTCGAGC
GCGGTGATGGCCCTGCAGAGCGTGGTGGCGCGCAACGTCGATCCGCAGAAgGCCGCGGTGGTCACGGTCGGT
GCATTGCAGGCCGGCGAGGCGGCCAACGTCATACCCCAGCGCGCCGTGCTGCGCCTGAGCCTGCGGGCGCTC
GACGGCCAGGTGCGCGAGCAGGTGCTGCAGCGGGTTCGCCAGATCATCGAGTTGCAGGCCGCCAGCTATGGG
TGCCAGGCCAGCATCGAGCACTACCCGGCCTATCCGGTGCTGGTCAACAGCGTCGAGGAAACCGAGTTCGCC
CGCCAGGTCGGGGTCGAGCTGGCCGGCGCGGAGCAGGTCGACGGCGCCACGCCGAAGCTGATGGGCAGCGAG
GACTTCGCCTGGATGCTACAGCGCTGCCCCGGCAGCTACCTGTTCATCGGCAACGGCAGAGGACGGCCGATG
GTGCACAACCCGGCCTATGACTTCAACGACGACATCCTGGTCCGGGGCGCGGCCTATTGGGGCGCGCTCGCC
GAGACCTGGCTGGCCGCCCCCGCGGCGTCCGGCCTTCGACTGACTGCCGCCAATAACGGCGCGGCCTGA
Translation:
MARHRHIVAWLEEVADDLRSLRQDIHAHPELGFEERRTAALVAECLRGWGYEVHEGIGRTGVVGVLRQGDGT
RRLGLRADMDALPIVEATGLGYSSCHGGRMHACGHDGHTAMLLGAARYLAATRRFDGTLVLIFQPAEEGQGG
AEAMLADGLLERFPCDALFGMHNMPGLEAGHLGFRAGPMMASQDLLSVTLEGVGGHGSMPHLSVDPLLAASS
AVMALQSVVARNVDPQKAAVVTVGALQAGEAANVIPQRAVLRLSLRALDGQVREQVLQRVRQIIELQAASYG
CQASIEHYPAYPVLVNSVEETEFARQVGVELAGAEQVDGATPKLMGSEDFAWMLQRCPGSYLFIGNGRGRPM
VHNPAYDFNDDILVRGAAYWGALAETWLAAPAASGLRLTAANNGAA*
AnnotationID:1419GeneID:1410
AnnotatorUID: diggins
Modification Date/Time: 2005-04-29 17:05:54
Gene Name:
Confidence Code:3
GeneProduct:Metal-dependent amidase/aminoacylase/carboxypeptid
Cell Localization:()
Synonyms:PA4344
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1473,pfam01546
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAB38315.1| (AP002567) putative amino acid amidohydrolase [Escherichia coli
           O157:H7]
          Length = 388

 Score =  412 bits (1058), Expect = e-114
 Identities = 206/387 (53%), Positives = 266/387 (68%), Gaps = 7/387 (1%)

>emb|CAE35363.1| (BX640452) putative hydrolase [Bordetella bronchiseptica]
          Length = 399

 Score =  394 bits (1013), Expect = e-109
 Identities = 202/390 (51%), Positives = 260/390 (66%), Gaps = 12/390 (3%)
 
>gb|AAL44232.1| (AE009272) hippurate hydrolase [Agrobacterium tumefaciens str. C58
           (U. Washington)]
          Length = 395

 Score =  389 bits (998), Expect = e-107
 Identities = 199/385 (51%), Positives = 262/385 (68%), Gaps = 5/385 (1%)







 
Structural Features:
COG1473, AbgB, Metal-dependent amidase/aminoacylase/carboxypeptidase
CD-Length = 392 residues,  97.7% aligned
Score =  424 bits (1091), Expect = 2e-119
Identities = 183/384 (47%), Positives = 247/384 (64%), Gaps = 7/384 (1%)

pfam01546, Peptidase_M20, Peptidase family M20/M25/M40.
CD-Length = 378 residues, 100.0% aligned
Score =  235 bits (600), Expect = 2e-62
Identities = 121/391 (30%), Positives = 174/391 (44%), Gaps = 32/391 (8%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2823




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17096




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1410_cdd.html


    		




 
URL:

















    ReferenceID:19968




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1410
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2563
                           PA4344_tr
                           translation of PA4344
                           406
                           99.75
                           99.75
                           0
                           2095.0
     

     
     
81011
                           gb|AAG07732.1|AE004850_10
                           (AE004850) probable hydrolase [Pseudomonas aeruginosa PAO1]
                           406
                           99.75
                           99.75
                           0
                           2095.0
     

     
     
2564
                           PA2922_tr
                           translation of PA2922
                           409
                           54.27
                           68.94
                           23
                           1121.0
     

     
     
81012
                           gb|AAG06310.1|AE004718_7
                           (AE004718) probable hydrolase [Pseudomonas aeruginosa PAO1]
                           409
                           54.27
                           68.94
                           23
                           1121.0
     

     
     
81013
                           gb|AAQ59774.1|
                           (AE016917) probable hydrolase [Chromobacterium violaceum ATCC 12472]
                           409
                           51.34
                           67.72
                           20
                           1082.0
     

     






      

          
GC ORFID: 44412How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4344Glimmer Score: 

          
Start: 4301716Stop: 4300496

          
Length: 1221


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4344 translation of PA4344Homolog Bit Score 811.0

          
Other Homologs:  t_PA2922 (ORF: BLASTX 435.0), psyr_15may02_Scaffold2_revised_gene3644 (ORF: BLASTX 349.0), t_PA4344 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTCGACATCGACACATCGTGGCCTGGCTCGAGGAGGTCGCCGACGACCTGCGTAGCCTGCGCCAGGAC 
ATCCACGCCCATCCCGAACTGGGCTTCGAGGAGCGACGCACCGCCGCGCTGGTCGCCGAGTGCCTGCGCGGC 
TGGGGCTACGAAGTGCACGAAGGGATCGGCCGCACCGGCGTGGTCGGCGTCCTCCGCCAGGGCGACGGTACG 
CGGCGGCTCGGCCTGCGGGCGGACATGGATGCGCTGCCGATCGTCGAGGCCACGGGGCTCGGCTACAGCAGC 
TGCCACGGCGGGCGCATGCACGCCTGCGGCCACGACGGACACACCGCGATGCTGCTCGGCGCGGCACGCTAC 
CTGGCGGCGACGCGGCGTTTCGACGGCACCCTGGTACTGATTTTCCAGCCCGCCGAGGAAGGCCAGGGCGGC 
GCCGAGGCGATGCTCGCCGACGGGCTGCTGGAGCGCTTTCCCTGCGATGCGCTGTTCGGCATGCACAACATG 
CCGGGACTGGAGGCCGGGCACCTGGGCTTCCGCGCGGGACCGATGATGGCTTCCCAGGACCTGCTGAGCGTC 
ACCCTGGAGGGCGTCGGTGGCCACGGTTCGATGCCGCACTTGAGCGTCGATCCGCTGCTCGCCGCGTCGAGC 
GCGGTGATGGCCCTGCAGAGCGTGGTGGCGCGCAACGTCGATCCGCAGAAgGCCGCGGTGGTCACGGTCGGT 
GCATTGCAGGCCGGCGAGGCGGCCAACGTCATACCCCAGCGCGCCGTGCTGCGCCTGAGCCTGCGGGCGCTC 
GACGGCCAGGTGCGCGAGCAGGTGCTGCAGCGGGTTCGCCAGATCATCGAGTTGCAGGCCGCCAGCTATGGG 
TGCCAGGCCAGCATCGAGCACTACCCGGCCTATCCGGTGCTGGTCAACAGCGTCGAGGAAACCGAGTTCGCC 
CGCCAGGTCGGGGTCGAGCTGGCCGGCGCGGAGCAGGTCGACGGCGCCACGCCGAAGCTGATGGGCAGCGAG 
GACTTCGCCTGGATGCTACAGCGCTGCCCCGGCAGCTACCTGTTCATCGGCAACGGCAGAGGACGGCCGATG 
GTGCACAACCCGGCCTATGACTTCAACGACGACATCCTGGTCCGGGGCGCGGCCTATTGGGGCGCGCTCGCC 
GAGACCTGGCTGGCCGCCCCCGCGGCGTCCGGCCTTCGACTGACTGCCGCCAATAACGGCGCGGCCTGA