ViewGene
Locus Name:
GeneID:
Location:

GeneID:141
TrivialName: PA14_44900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44900
PAO1 Ortholog Locus:PA1511
Sequence Length:2529
Protein Length:842
Start: 4000789
Stop: 4003317
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04900.1|AE004579_12 (AE004579) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 835/842 (99%), Positives = 839/842 (99%)
Sequence:
ATGCGTCAAAGAGACCTGAAATTCACCTTCGTCGTTGGCGAAGGGAACCTTGCGTTCGATGTCGTCGAGTTC
GAACTGGAAGAAGCGCTCTGCGAGCCTTTCCGCCTGAACCTGAAGCTGGTCAGCGACAAGAACGCCATCGAT
TTCAAGCAGGTACTCGACCAGCCGGGCACCTTCACCCTCTGGCAGGACGGCCGTCCTGCCCGCTACGTCCAT
GGCATCGTCAGCCACTTCACCCAAGGCAGCTCGGGTTTTCGCCGGACCCGCTACGAACTGCTGCTGGAACCA
CAGTTGGCGCGCCTGGAGCTGTGCTGCAACTGGCGGATCTTCCAGGAGAAGAGTGTTCCGGAGATTCTCCAG
GCGCTGCTCAAGGAACACCGGGTGCTCGACTACGAACAGCGCATCTACCATGAGCACCTGCCGCGCGAATAC
TGCGTGCAGGCCGGCGACAGCGATCACTACCTGCACGACCGGCTAGCCTTCGAGGAAGGCCTGGTCTACTAC
TTCCGCTTCGACGAACACCGCCACACCCTGGTCTGCAGCGACCGGCTCTACGTCCAGGAGCGTATCGCCGGC
GGCCCGGTACTGTTCAGCGCCCAGCCGGAGGGCGACAACCCACAGCCGGTGCTTCATTCTTTCCGCTACAGC
GAAAATGTTCGTACGGCTCGACAGACCCAGCGGGACTACAGCTTCAAGCGCCCGACCTACGACCAGGAGCAT
CATCTCGCTGGCGAGGCGCTCGAGCATCAGGGCTCGTCCTACGAGCGCTACGACTACCCCGGTCGCTACAAG
CAGAGCGGCGCCGGCCGGCCTTTCAGCGAAAGCCGCCTCAGAGGGCACCGGCGCGATGCGCGGGTGGCATCG
GTCAGCGGCGACGACCCGCGGCTGATCCCGGGCCACGCCTTTGCCCTGGAAGGTCATCCGCGTGCCGACTTC
AACGCCTGGTGGCGGCCGGTACGGGTGGTCCATCGCGGCACCCAGTATGCCGGCCAGGAGGAAGAGTCCGCC
GACGCCCCTCTGGGGGTGAGCTACGACCTGCGCGCCGAACTGGTGCCCGAGGACGTCGAATGGCGTCCCGCA
CCGCTGCCTCGGCCGCGTATCGATGGTCCGCAGATCGCGACGGTAGTCGGCCCGGCAGGGGAAGAGATCCAT
TGCGACGAGTGGGGGCGGGTGAAAGTCCAGTTCCCCTGGGATCGCGAGGGACGTCACGATGAGTTCAGTACC
TGCTGGATACGGGTCGCGCAGAACTGGGCGGGTGCCGACTGGGGACACATGGCGATCCCGCGGATTGGCCAG
GAGGTGATCGTCGATTACCTGGACGGCGACTGCGACCAGCCGATCGTCACCGGGCGCACCTACCGGGCGACC
AACCGACCACCCTACGCGCTGCCCGACCACAAGATCCTCAGCACCATCAAGAGCAAGGAGTACAAGGGCAGT
CGGGCCAACGAGCTGCGCATCGACGACACCACGGCGCAGATCAGTGCGGCGCTGATGAGCGACCACGGTGCC
AGCGCGCTGCACCTGGGCTACCTGACCCATCCTCGGCCCGAAGGCGGCAAGCCACGCGGCGAGGGCTTCGAA
CTGCGCACCGACGAACATGGCGCGGTGCGTGCGGCCAAGGGGCTGCTGCTGAGCACCGAGGAGCAGCTCAGG
GCCGGCGCCGGCCATCTCGACCGAGGCGTCGTGGTGCAGGTGCTGGAGGCGGCGCTGGAGCTGGCCCGCGAG
CTGGGCGACTACGCCGGGGAGCACCAGGGCGTGGGGCACGACGCGGCGCCGCAGCAAACCCTCCAGGAAGCC
GTGCGCGACCTCGGCCACGGTGCCAACGACGAGTCCGGCAAGAGCAACGGAGGCAAGCCGGCGATCGCCTTG
AGCGGTCCGGCAGGGATCGCCGCGGCGACGCCGGCGAGCCTGACCCTGGCCGCCGGCGAGCACGTCGACAGC
GTGGCCCGGCAGAACCAGCAGGTGACCGCCGGGCAGAAGGTGGTGATCAACGCCGGCAGCGACATCGGCCTG
TTCGCCCAGGGCGGCGAGCTGCGCCAGATCACCCACCAGGGGCCGATGCTGCTGCAGGCGCAGAAGAACGAC
ATCCGCCTGGAGGCCGAGCAGAGCGTGGAGGTCAGCGCCAGCCAGCAGCACGTGCTGGTCACCGCGAAGGAG
CACATCACCCTGATGTGCGGCGGCGCCTACCTGACCCTCAAGGGCGGCAACATCGAGCTGGGCATGCCCGGC
AACTTCGTGGTCAAGGCGGCGAAGCACAGTCATGTCGGTCCCGCTCATGCATCGACCAGCTTCAACGCCTGG
GATTCGACACCGTTCGATGACCGGTATGTCCTGCGCGACGAGGCCACGCTGGAGCCGTTACCCAATACCGCC
GTTGAAGTGATACGAGGCGATGGTGGTGTGGTGAAACTGATGACCGACAGCCAGGGCCGTTTACCCAAGCAA
CAACACCTGGCCGTGGACCCGGTGCAGATACGCATCCTGGGCAAGGGCAGTCACAACAGCGACACGGAGTCC
AACACATGA
Translation:
MRQRDLKFTFVVGEGNLAFDVVEFELEEALCEPFRLNLKLVSDKNAIDFKQVLDQPGTFTLWQDGRPARYVH
GIVSHFTQGSSGFRRTRYELLLEPQLARLELCCNWRIFQEKSVPEILQALLKEHRVLDYEQRIYHEHLPREY
CVQAGDSDHYLHDRLAFEEGLVYYFRFDEHRHTLVCSDRLYVQERIAGGPVLFSAQPEGDNPQPVLHSFRYS
ENVRTARQTQRDYSFKRPTYDQEHHLAGEALEHQGSSYERYDYPGRYKQSGAGRPFSESRLRGHRRDARVAS
VSGDDPRLIPGHAFALEGHPRADFNAWWRPVRVVHRGTQYAGQEEESADAPLGVSYDLRAELVPEDVEWRPA
PLPRPRIDGPQIATVVGPAGEEIHCDEWGRVKVQFPWDREGRHDEFSTCWIRVAQNWAGADWGHMAIPRIGQ
EVIVDYLDGDCDQPIVTGRTYRATNRPPYALPDHKILSTIKSKEYKGSRANELRIDDTTAQISAALMSDHGA
SALHLGYLTHPRPEGGKPRGEGFELRTDEHGAVRAAKGLLLSTEEQLRAGAGHLDRGVVVQVLEAALELARE
LGDYAGEHQGVGHDAAPQQTLQEAVRDLGHGANDESGKSNGGKPAIALSGPAGIAAATPASLTLAAGEHVDS
VARQNQQVTAGQKVVINAGSDIGLFAQGGELRQITHQGPMLLQAQKNDIRLEAEQSVEVSASQQHVLVTAKE
HITLMCGGAYLTLKGGNIELGMPGNFVVKAAKHSHVGPAHASTSFNAWDSTPFDDRYVLRDEATLEPLPNTA
VEVIRGDGGVVKLMTDSQGRLPKQQHLAVDPVQIRILGKGSHNSDTESNT*
AnnotationID:151GeneID:141
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 07:07:58
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1511
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68990.1|AE016531_2 (AE016786) vgrG protein [Pseudomonas putida KT2440]
          Length = 725

 Score =  543 bits (1398), Expect = e-153
 Identities = 270/506 (53%), Positives = 334/506 (66%), Gaps = 19/506 (3%)

>gb|AAM83862.1|AE013626_9 (AE013626) VgrG-like protein [Yersinia pestis KIM]
          Length = 800

 Score =  383 bits (983), Expect = e-105
 Identities = 202/471 (42%), Positives = 274/471 (58%), Gaps = 4/471 (0%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:285




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17427




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37324




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:141_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:141
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
257
                           PA1511_tr
                           translation of PA1511
                           842
                           99.16
                           99.64
                           0
                           4429.0
     

     
     
17583
                           gb|AAG04900.1|AE004579_12
                           (AE004579) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           842
                           99.16
                           99.64
                           0
                           4429.0
     

     
     
258
                           PA0262_tr
                           translation of PA0262
                           1023
                           74.97
                           76.93
                           185
                           4031.0
     

     
     
17584
                           gb|AAG03651.1|AE004464_4
                           (AE004464) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           1023
                           74.97
                           76.93
                           185
                           4031.0
     

     
     
17587
                           gb|AAN69639.1|AE016597_10
                           (AE016789) vgrG protein [Pseudomonas putida KT2440]
                           896
                           36.94
                           50.11
                           179
                           1447.0
     

     






      

          
GC ORFID: 43143How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1511Glimmer Score: 

          
Start: 953120Stop: 950592

          
Length: 2529


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1511 translation of PA1511Homolog Bit Score 1710.0

          
Other Homologs:  t_PA1511 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTCAAAGAGACCTGAAATTCACCTTCGTCGTTGGCGAAGGGAACCTTGCGTTCGATGTCGTCGAGTTC 
GAACTGGAAGAAGCGCTCTGCGAGCCTTTCCGCCTGAACCTGAAGCTGGTCAGCGACAAGAACGCCATCGAT 
TTCAAGCAGGTACTCGACCAGCCGGGCACCTTCACCCTCTGGCAGGACGGCCGTCCTGCCCGCTACGTCCAT 
GGCATCGTCAGCCACTTCACCCAAGGCAGCTCGGGTTTTCGCCGGACCCGCTACGAACTGCTGCTGGAACCA 
CAGTTGGCGCGCCTGGAGCTGTGCTGCAACTGGCGGATCTTCCAGGAGAAGAGTGTTCCGGAGATTCTCCAG 
GCGCTGCTCAAGGAACACCGGGTGCTCGACTACGAACAGCGCATCTACCATGAGCACCTGCCGCGCGAATAC 
TGCGTGCAGGCCGGCGACAGCGATCACTACCTGCACGACCGGCTAGCCTTCGAGGAAGGCCTGGTCTACTAC 
TTCCGCTTCGACGAACACCGCCACACCCTGGTCTGCAGCGACCGGCTCTACGTCCAGGAGCGTATCGCCGGC 
GGCCCGGTACTGTTCAGCGCCCAGCCGGAGGGCGACAACCCACAGCCGGTGCTTCATTCTTTCCGCTACAGC 
GAAAATGTTCGTACGGCTCGACAGACCCAGCGGGACTACAGCTTCAAGCGCCCGACCTACGACCAGGAGCAT 
CATCTCGCTGGCGAGGCGCTCGAGCATCAGGGCTCGTCCTACGAGCGCTACGACTACCCCGGTCGCTACAAG 
CAGAGCGGCGCCGGCCGGCCTTTCAGCGAAAGCCGCCTCAGAGGGCACCGGCGCGATGCGCGGGTGGCATCG 
GTCAGCGGCGACGACCCGCGGCTGATCCCGGGCCACGCCTTTGCCCTGGAAGGTCATCCGCGTGCCGACTTC 
AACGCCTGGTGGCGGCCGGTACGGGTGGTCCATCGCGGCACCCAGTATGCCGGCCAGGAGGAAGAGTCCGCC 
GACGCCCCTCTGGGGGTGAGCTACGACCTGCGCGCCGAACTGGTGCCCGAGGACGTCGAATGGCGTCCCGCA 
CCGCTGCCTCGGCCGCGTATCGATGGTCCGCAGATCGCGACGGTAGTCGGCCCGGCAGGGGAAGAGATCCAT 
TGCGACGAGTGGGGGCGGGTGAAAGTCCAGTTCCCCTGGGATCGCGAGGGACGTCACGATGAGTTCAGTACC 
TGCTGGATACGGGTCGCGCAGAACTGGGCGGGTGCCGACTGGGGACACATGGCGATCCCGCGGATTGGCCAG 
GAGGTGATCGTCGATTACCTGGACGGCGACTGCGACCAGCCGATCGTCACCGGGCGCACCTACCGGGCGACC 
AACCGACCACCCTACGCGCTGCCCGACCACAAGATCCTCAGCACCATCAAGAGCAAGGAGTACAAGGGCAGT 
CGGGCCAACGAGCTGCGCATCGACGACACCACGGCGCAGATCAGTGCGGCGCTGATGAGCGACCACGGTGCC 
AGCGCGCTGCACCTGGGCTACCTGACCCATCCTCGGCCCGAAGGCGGCAAGCCACGCGGCGAGGGCTTCGAA 
CTGCGCACCGACGAACATGGCGCGGTGCGTGCGGCCAAGGGGCTGCTGCTGAGCACCGAGGAGCAGCTCAGG 
GCCGGCGCCGGCCATCTCGACCGAGGCGTCGTGGTGCAGGTGCTGGAGGCGGCGCTGGAGCTGGCCCGCGAG 
CTGGGCGACTACGCCGGGGAGCACCAGGGCGTGGGGCACGACGCGGCGCCGCAGCAAACCCTCCAGGAAGCC 
GTGCGCGACCTCGGCCACGGTGCCAACGACGAGTCCGGCAAGAGCAACGGAGGCAAGCCGGCGATCGCCTTG 
AGCGGTCCGGCAGGGATCGCCGCGGCGACGCCGGCGAGCCTGACCCTGGCCGCCGGCGAGCACGTCGACAGC 
GTGGCCCGGCAGAACCAGCAGGTGACCGCCGGGCAGAAGGTGGTGATCAACGCCGGCAGCGACATCGGCCTG 
TTCGCCCAGGGCGGCGAGCTGCGCCAGATCACCCACCAGGGGCCGATGCTGCTGCAGGCGCAGAAGAACGAC 
ATCCGCCTGGAGGCCGAGCAGAGCGTGGAGGTCAGCGCCAGCCAGCAGCACGTGCTGGTCACCGCGAAGGAG 
CACATCACCCTGATGTGCGGCGGCGCCTACCTGACCCTCAAGGGCGGCAACATCGAGCTGGGCATGCCCGGC 
AACTTCGTGGTCAAGGCGGCGAAGCACAGTCATGTCGGTCCCGCTCATGCATCGACCAGCTTCAACGCCTGG 
GATTCGACACCGTTCGATGACCGGTATGTCCTGCGCGACGAGGCCACGCTGGAGCCGTTACCCAATACCGCC 
GTTGAAGTGATACGAGGCGATGGTGGTGTGGTGAAACTGATGACCGACAGCCAGGGCCGTTTACCCAAGCAA 
CAACACCTGGCCGTGGACCCGGTGCAGATACGCATCCTGGGCAAGGGCAGTCACAACAGCGACACGGAGTCC 
AACACATGA