ViewGene

Locus Name:
GeneID:
Location:

GeneID:1409
TrivialName: PA14_09460
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09460
PAO1 Ortholog Locus:PA4212
Sequence Length:1218
Protein Length:405
Start: 812093
Stop: 810876
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07599.1|AE004838_3 (AE004838) phenazine biosynthesis protein PhzC [Pseudomonas aeruginosa PAO1]
Identities = 402/405 (99%), Positives = 403/405 (99%)
Sequence:
ATGGACGATCTATTGCAACGCGTACGGCGCTGCGAAGCGCTGCAGCAACCCGAATGGGGCGATCCGTCGCGC
CTGCGCGACGTGCAGGCGTACCTGCGCGGCAGTCCGGCGCTGATCCGCGCCGGCGACATCCTGGCCCTGCGC
GCGACCCTGGCGCGGGTCGCCCGCGGCGAGGCGCTGGTGGTGCAGTGCGGCGACTGCGCCGAGGACATGGAC
GACCACCATGCCGAGAACGTGGCGCGCAAGGCCGCCGTGCTGGAACTGCTGGCCGGCGCCCTGCGCCTGGCC
GGCCGGCGGCCGGTGATCCGCGTCGGGCGCATCGCCGGGCAGTACGCCAAGCCGCGTTCCAAGCCGCACGAG
CAGGTCGGCGAGCAGACCCTGCCGGTCTATCGCGGCGACATGGTCAACGGCCGCGAGGCCCATGCCGAGCAG
CGCCGGGCCGATCCGCAGCGGATTCTCAAGGGCTATGCGGCGGCGCGCAACATCATGCGCCACCTGGGCTGG
GACGCCGCGTCCGGGCAGGAGGCGAATGCCTCGCCGGTCTGGACCAGCCACGAGATGCTGCTGCTCGACTAC
GAGCTGTCGATGCTGCGCGAGGACGAGCAGCGCCGGGTCTATCTCGGTTCGACCCACTGGCCGTGGATCGGC
GAGCGCACCCGCCAGGTCGACGGCGCCCATGTGGCGCTGCTGGCCGAGGTGCTCAACCCGGTGGCCTGCAAG
GTCGGTCCGGAGATCGGCCGCGACCAGTTGCTGGCGCTCTGCGAGCGTCTCGACCCGCGCCGCGAGCCGGGG
CGCCTGACGCTGATCGCGCGGATGGGCGCGCAGAAGGTCGGCGAGCGCCTGCCGCCGCTGGTGGAGGCGGTG
CGCGCGGCCGGGCACCCGGTGATCTGGCTGAGCGACCCGATGCACGGCAACACCATCGTCGCGCCCTGCGGC
AACAAGACCCGCCTGGTGCGCAGCATCGCCGAGGAGGTGGCGGCGTTCCGCCTGGCGGTGTCCGGCTCCGGC
GGCGTGGCCGCCGGGCTGCACCTGGAGACCACCCCGGACGACGTCACCGAGTGCGTCGCCGATTCCAGCGGC
CTGCACCAGGTCGGCCGGCACTACACCAGCCTCTGCGATCCGCGGCTGAACCCCTGGCAGGCGCTCAGCGCG
GTGATGGCCTGGGCCGGCGCAGAAGCGACCCCGAGCGCAACCTTCCCCCTGGAGACCGTGGCATGA
Translation:
MDDLLQRVRRCEALQQPEWGDPSRLRDVQAYLRGSPALIRAGDILALRATLARVARGEALVVQCGDCAEDMD
DHHAENVARKAAVLELLAGALRLAGRRPVIRVGRIAGQYAKPRSKPHEQVGEQTLPVYRGDMVNGREAHAEQ
RRADPQRILKGYAAARNIMRHLGWDAASGQEANASPVWTSHEMLLLDYELSMLREDEQRRVYLGSTHWPWIG
ERTRQVDGAHVALLAEVLNPVACKVGPEIGRDQLLALCERLDPRREPGRLTLIARMGAQKVGERLPPLVEAV
RAAGHPVIWLSDPMHGNTIVAPCGNKTRLVRSIAEEVAAFRLAVSGSGGVAAGLHLETTPDDVTECVADSSG
LHQVGRHYTSLCDPRLNPWQALSAVMAWAGAEATPSATFPLETVA*
AnnotationID:1418GeneID:1409
AnnotatorUID: danlee
Modification Date/Time: 2003-11-13 12:12:44
Gene Name:phzC1
Confidence Code:1
GeneProduct:phenazine biosynthesis protein PhzC
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(23) Secreted Factors (toxins, enzymes, alginate)
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Operon phzA1B1C1D1E1F1G1
Comment:
ReferenceID:2821
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19966
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:1409

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2561 PA4212_tr translation of PA4212 405 99.25 99.50 0 2094.0
2562 PA1901_tr translation of PA1901 405 99.25 99.50 0 2094.0
80993 gb|AAG07599.1|AE004838_3 (AE004838) phenazine biosynthesis protein PhzC [Pseudomonas aeruginosa PAO1] 405 99.25 99.50 0 2094.0
80994 gb|AAG05290.1|AE004616_4 (AE004616) phenazine biosynthesis protein PhzC [Pseudomonas aeruginosa PAO1] 405 99.25 99.50 0 2094.0
80995 gb|AAC64491.1| (AF005404) PhzC [Pseudomonas aeruginosa] 405 99.25 99.50 0 2094.0
GC ORFID: 44411How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4212Glimmer Score:
Start: 4141844Stop: 4143061
Length: 1218
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4212 translation of PA4212Homolog Bit Score 811.0
Other Homologs: t_PA1901 (ORF: BLASTX 811.0), t_PA4212 (ORF: GLIMMER)
GC ORF Sequence
ATGGACGATCTATTGCAACGCGTACGGCGCTGCGAAGCGCTGCAGCAACCCGAATGGGGCGATCCGTCGCGC
CTGCGCGACGTGCAGGCGTACCTGCGCGGCAGTCCGGCGCTGATCCGCGCCGGCGACATCCTGGCCCTGCGC
GCGACCCTGGCGCGGGTCGCCCGCGGCGAGGCGCTGGTGGTGCAGTGCGGCGACTGCGCCGAGGACATGGAC
GACCACCATGCCGAGAACGTGGCGCGCAAGGCCGCCGTGCTGGAACTGCTGGCCGGCGCCCTGCGCCTGGCC
GGCCGGCGGCCGGTGATCCGCGTCGGGCGCATCGCCGGGCAGTACGCCAAGCCGCGTTCCAAGCCGCACGAG
CAGGTCGGCGAGCAGACCCTGCCGGTCTATCGCGGCGACATGGTCAACGGCCGCGAGGCCCATGCCGAGCAG
CGCCGGGCCGATCCGCAGCGGATTCTCAAGGGCTATGCGGCGGCGCGCAACATCATGCGCCACCTGGGCTGG
GACGCCGCGTCCGGGCAGGAGGCGAATGCCTCGCCGGTCTGGACCAGCCACGAGATGCTGCTGCTCGACTAC
GAGCTGTCGATGCTGCGCGAGGACGAGCAGCGCCGGGTCTATCTCGGTTCGACCCACTGGCCGTGGATCGGC
GAGCGCACCCGCCAGGTCGACGGCGCCCATGTGGCGCTGCTGGCCGAGGTGCTCAACCCGGTGGCCTGCAAG
GTCGGTCCGGAGATCGGCCGCGACCAGTTGCTGGCGCTCTGCGAGCGTCTCGACCCGCGCCGCGAGCCGGGG
CGCCTGACGCTGATCGCGCGGATGGGCGCGCAGAAGGTCGGCGAGCGCCTGCCGCCGCTGGTGGAGGCGGTG
CGCGCGGCCGGGCACCCGGTGATCTGGCTGAGCGACCCGATGCACGGCAACACCATCGTCGCGCCCTGCGGC
AACAAGACCCGCCTGGTGCGCAGCATCGCCGAGGAGGTGGCGGCGTTCCGCCTGGCGGTGTCCGGCTCCGGC
GGCGTGGCCGCCGGGCTGCACCTGGAGACCACCCCGGACGACGTCACCGAGTGCGTCGCCGATTCCAGCGGC
CTGCACCAGGTCGGCCGGCACTACACCAGCCTCTGCGATCCGCGGCTGAACCCCTGGCAGGCGCTCAGCGCG
GTGATGGCCTGGGCCGGCGCAGAAGCGACCCCGAGCGCAACCTTCCCCCTGGAGACCGTGGCATGA