ViewGene

Locus Name:
GeneID:
Location:

GeneID:1407
TrivialName: PA14_09380
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09380
PAO1 Ortholog Locus:PA4218
Sequence Length:1245
Protein Length:414
Start: 803961
Stop: 805205
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07606.1|AE004838_10 (AE004838) probable transporter [Pseudomonas aeruginosa PAO1]
Identities = 413/414 (99%), Positives = 414/414 (100%)
Sequence:
ATGCTTGAGCTGTATCGCCACCGCCGCCTGGTCATCACCCTGGCGTTGCTCTACCTGTCCCAGGGCATTCCC
ATCGGCCTGGCCATGGACGCCCTGCCCACCCTCCTGCGCCAGGATGGCGCGCCATTGCAGGCGCTGGCCTTC
CTGCCCCTGGTGGGGCTGCCCTGGGTGGTCAAGTTCCTCTGGGCGCCCTGGGTCGACAACCATTGGTCGCGC
CGTCTCGGCCGGCGGCGTAGCTGGATCCTGCCGATGCAATGCATCGTCCTCGCCTGCCTGCTTGGCCTGGCG
ACGCTCGGCCTCGGCGTGGCCAGTGCCGGTTGGGCGGTCGGCCTGCTGGCGCTGGCTTCGCTGGCCAGCGCG
ACCCAGGACATCGCCACCGACGGCATGGCGGCGGAGCACTTCAGCGGCGAGCTGCTGGCCAAGGTCAACGCG
GTACAGATCGCCGGGGTGATGATCGGCTTCTTCGGCGGCGGCGCCGGCAGCCTGATCCTCGCCGGGCATTTC
GGCCAGCGCACGGCGTTCCTGGTCATGGCCTGCGTGCCGCTGGCAAGCCTGTGCTGCGTGCTCGCCCTGGGG
CGCGGCGACCCCCACGAACTCCCCCCGGCACCGGCCGCCAAGGCCAGCCTGCTGCGCTTCCTGCGTCGGCCG
CTGGCGCCTTCGCTGCTGGCGCTGGCACTGCTGTCGGCGATGACCGCGGTGTCCGGCTTCGGCCTGTCCAAG
CTGTACCTCAGCGATGCCGGCTGGGCCTTGCAGGACATCGGCCGGCTGGGCATGAGCGGTGGCCTGGTCACG
GTATTCCTCGGCTGCGGCGGCGGCGCCTGGCTGGTCAGGCGGATCGGCCTGTGGCGCGGTTTCGCCCTTGGC
GTGGTGCTCGCCGGTTGTTCGGCGCTGCTCTGGTATCTGCAGGCCGGTCGCTGGTTGGCACTGAGTGAAGGA
TTGGCGTGGACCTGCGTGCTGATCGGCTCGCTGGCTACCGGCATCACCTCGGTGGCGATCCTCACCGCGGCG
ATGCGCTTCGCCGGCCAGGGCGGCCAGGCCGGCACCGATGTCACCGCGGTGCAGAGCACCCGAGACCTCGGC
GAGATGCTGGCGTCTTCGTTCCTGGTCAGCCTCACCGCGCAGATCGGCTATGCCGGCGGTTTCCTCACCGGC
AGCGCCCTGGCGGTGCTGGCCCTGCTGCTCGCCCTGCGCCTGCAGGCCGGCGAGGGGCGCGGGGAGTGGAAG
GGGCGGGCGGAAGAGGCCTGA
Translation:
MLELYRHRRLVITLALLYLSQGIPIGLAMDALPTLLRQDGAPLQALAFLPLVGLPWVVKFLWAPWVDNHWSR
RLGRRRSWILPMQCIVLACLLGLATLGLGVASAGWAVGLLALASLASATQDIATDGMAAEHFSGELLAKVNA
VQIAGVMIGFFGGGAGSLILAGHFGQRTAFLVMACVPLASLCCVLALGRGDPHELPPAPAAKASLLRFLRRP
LAPSLLALALLSAMTAVSGFGLSKLYLSDAGWALQDIGRLGMSGGLVTVFLGCGGGAWLVRRIGLWRGFALG
VVLAGCSALLWYLQAGRWLALSEGLAWTCVLIGSLATGITSVAILTAAMRFAGQGGQAGTDVTAVQSTRDLG
EMLASSFLVSLTAQIGYAGGFLTGSALAVLALLLALRLQAGEGRGEWKGRAEEA*
AnnotationID:1416GeneID:1407
AnnotatorUID: diggins
Modification Date/Time: 2005-04-01 06:06:56
Gene Name:
Confidence Code:3
GeneProduct:putative transporter
Cell Localization:()
Synonyms:PA4218
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:2817
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19962
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36913
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1407_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1407

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2559 PA4218_tr translation of PA4218 414 99.75 99.99 0 2101.0
80877 gb|AAG07606.1|AE004838_10 (AE004838) probable transporter [Pseudomonas aeruginosa PAO1] 414 99.75 99.99 0 2101.0
GC ORFID: 44409How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4218Glimmer Score:
Start: 4149976Stop: 4148732
Length: 1245
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4218 translation of PA4218Homolog Bit Score 813.0
Other Homologs: t_PA4218 (ORF: GLIMMER)
GC ORF Sequence
ATGCTTGAGCTGTATCGCCACCGCCGCCTGGTCATCACCCTGGCGTTGCTCTACCTGTCCCAGGGCATTCCC
ATCGGCCTGGCCATGGACGCCCTGCCCACCCTCCTGCGCCAGGATGGCGCGCCATTGCAGGCGCTGGCCTTC
CTGCCCCTGGTGGGGCTGCCCTGGGTGGTCAAGTTCCTCTGGGCGCCCTGGGTCGACAACCATTGGTCGCGC
CGTCTCGGCCGGCGGCGTAGCTGGATCCTGCCGATGCAATGCATCGTCCTCGCCTGCCTGCTTGGCCTGGCG
ACGCTCGGCCTCGGCGTGGCCAGTGCCGGTTGGGCGGTCGGCCTGCTGGCGCTGGCTTCGCTGGCCAGCGCG
ACCCAGGACATCGCCACCGACGGCATGGCGGCGGAGCACTTCAGCGGCGAGCTGCTGGCCAAGGTCAACGCG
GTACAGATCGCCGGGGTGATGATCGGCTTCTTCGGCGGCGGCGCCGGCAGCCTGATCCTCGCCGGGCATTTC
GGCCAGCGCACGGCGTTCCTGGTCATGGCCTGCGTGCCGCTGGCAAGCCTGTGCTGCGTGCTCGCCCTGGGG
CGCGGCGACCCCCACGAACTCCCCCCGGCACCGGCCGCCAAGGCCAGCCTGCTGCGCTTCCTGCGTCGGCCG
CTGGCGCCTTCGCTGCTGGCGCTGGCACTGCTGTCGGCGATGACCGCGGTGTCCGGCTTCGGCCTGTCCAAG
CTGTACCTCAGCGATGCCGGCTGGGCCTTGCAGGACATCGGCCGGCTGGGCATGAGCGGTGGCCTGGTCACG
GTATTCCTCGGCTGCGGCGGCGGCGCCTGGCTGGTCAGGCGGATCGGCCTGTGGCGCGGTTTCGCCCTTGGC
GTGGTGCTCGCCGGTTGTTCGGCGCTGCTCTGGTATCTGCAGGCCGGTCGCTGGTTGGCACTGAGTGAAGGA
TTGGCGTGGACCTGCGTGCTGATCGGCTCGCTGGCTACCGGCATCACCTCGGTGGCGATCCTCACCGCGGCG
ATGCGCTTCGCCGGCCAGGGCGGCCAGGCCGGCACCGATGTCACCGCGGTGCAGAGCACCCGAGACCTCGGC
GAGATGCTGGCGTCTTCGTTCCTGGTCAGCCTCACCGCGCAGATCGGCTATGCCGGCGGTTTCCTCACCGGC
AGCGCCCTGGCGGTGCTGGCCCTGCTGCTCGCCCTGCGCCTGCAGGCCGGCGAGGGGCGCGGGGAGTGGAAG
GGGCGGGCGGAAGAGGCCTGA