ViewGene

Locus Name:
GeneID:
Location:

GeneID:1406
TrivialName: PA14_10420
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10420
PAO1 Ortholog Locus:PA4138
Sequence Length:1239
Protein Length:412
Start: 898671
Stop: 899909
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07525.1|AE004830_6 (AE004830) tyrosyl-tRNA synthetase [Pseudomonas aeruginosa PAO1]
Identities = 408/412 (99%), Positives = 410/412 (99%)
Sequence:
GTGTCCGTCCCGACCCATCAGCAAGACCTGATCGCCCTGCTCGAAGAGCGTGGCTTCGTCCACCAGTGCACC
GACCGCGACGGCCTCGCCGCGCACCTGGCCGCCGGTCCGGCAACCGCCTACCTGGGCTTCGACGCCACCGCC
GACAGCCTGCACATCGGCCACCTGCAGGGCCTGATGCTGATGCGCTGGCTACAGAAGGCCGGGCACCGTCCG
TTGCTGCTGATCGGTGGCGCGACCACCCGGATCGGCGATCCGAGCTTCCGCGATTCGAGCCGGCCGATCCTC
ACCGAGGCGCAGATCCAGGCCAACATCGACGGCATCGCCCGGGTCTTCTCGCGCTACGTCGAACTGCACGAC
GACAGCCTGGTGAACAACGCCGAATGGCTGGACGGCGTCGGCTACCTGGAGTTCCTCGACCGGGTCGGCCGG
CACTTCTCGATCAACCGCCTGCTGACCTTCGACGCCATCAGGCAGCGCCTGGACCGCGAGCATTCGCTGTCG
TTCCTCGAGTTCGGCTACACCCTGCTGCAGGCCTACGACTTCGTCGAACTGTCGCGCCGGCGCGGCTGCACC
CTGCAACTCGGCGGCGCCGACCAGTGGGCGAACATCATCAACGGCGTGGAGCTGTCGCGACGCCAGGGCGGC
GCCCAACTGTTCGGCCTGACCATGCCGCTGCTGGCCACCAGCGACGGGCGCAAGATGGGCAAGTCGGCGCAG
GGTGCGGTATGGCTCAACGCCGAGCGCCTGGCGCCGTTCGACTTCTGGCAGTTCTGGCGCAACTGCGACGAT
CGCGACGTCGGTCGCTTCCTCGCCCTGTTCAGCGAACTGCCGATGGATGAGGTGCGCCGCCTGGGCGCCTTG
CAGGGCGCCGAGCTGAACGAAGCGAAGGTGGTCCTGGCCAATGCCGCCACCGCCCTGGCGCACGGCGAGCAC
GCCGCGCGATCCGCCGCCGATGCCGCGCGCGGGGTGTTCGCCGACGGTACGCGGGACAGCGGCCTGCCGATG
ATGAAGCTATCCCGCGCGCGCCTGGCGCAGGGACTGTCGCTGACCGACCTGCTGCTGGAGCACGCGATCCAG
CCCTCCCGCAGCGCGGTCCGCCGCCTCGCCGCCGGCGGCGGCCTGCGCCTGGACGGCACGCCGGTCAGCGAT
CCGGACGCGCCGCTGGCGGGCGAGGTCGACGGGCTGCGCCTGAGCCTGGGCAAGAAGCAGCATTTGCAACTG
CGACTCGAGGATTGA
Translation:
MSVPTHQQDLIALLEERGFVHQCTDRDGLAAHLAAGPATAYLGFDATADSLHIGHLQGLMLMRWLQKAGHRP
LLLIGGATTRIGDPSFRDSSRPILTEAQIQANIDGIARVFSRYVELHDDSLVNNAEWLDGVGYLEFLDRVGR
HFSINRLLTFDAIRQRLDREHSLSFLEFGYTLLQAYDFVELSRRRGCTLQLGGADQWANIINGVELSRRQGG
AQLFGLTMPLLATSDGRKMGKSAQGAVWLNAERLAPFDFWQFWRNCDDRDVGRFLALFSELPMDEVRRLGAL
QGAELNEAKVVLANAATALAHGEHAARSAADAARGVFADGTRDSGLPMMKLSRARLAQGLSLTDLLLEHAIQ
PSRSAVRRLAAGGGLRLDGTPVSDPDAPLAGEVDGLRLSLGKKQHLQLRLED*
AnnotationID:1415GeneID:1406
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 14:02:55
Gene Name:tyrS
Confidence Code:2
GeneProduct:tyrosyl-tRNA synthetase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0162,cd00805,pfam00579
Secondary Functional Category(ies):amino acid biosynthesis and metabolism
EC Number:6.1.1.1
Status:ACTIVE
Pathway:
Homology:
>dbj|BAB47686.1| (AP002994) tyrosyl-tRNA synthetase [Mesorhizobium loti]
          Length = 417

 Score =  416 bits (1070), Expect = e-115
 Identities = 206/415 (49%), Positives = 274/415 (66%), Gaps = 8/415 (1%)

>gb|AAL52228.1| (AE009544) TYROSYL-TRNA SYNTHETASE [Brucella melitensis 16M]
          Length = 417

 Score =  414 bits (1064), Expect = e-115
 Identities = 203/411 (49%), Positives = 276/411 (67%), Gaps = 8/411 (1%)

Structural Features:
COG0162, TyrS, Tyrosyl-tRNA synthetase 
[Translation, ribosomal structure and biogenesis]
CD-Length = 401 residues,  99.8% aligned
Score =  419 bits (1079), Expect = 3e-118
Identities = 175/409 (42%), Positives = 251/409 (61%), Gaps = 13/409 (3%)

cd00805, TyrRS_core, Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain.
CD-Length = 268 residues,  99.6% aligned
Score =  267 bits (684), Expect = 2e-72

pfam00579, tRNA-synt_1b, tRNA synthetases class I (W and Y).
CD-Length = 287 residues,  99.0% aligned
Score =  210 bits (535), Expect = 3e-55
Identities = 101/295 (34%), Positives = 151/295 (51%), Gaps = 15/295 (5%)
Genomic Context:
Comment:
ReferenceID:14345
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19960
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36858
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1406_cdd.html
URL:
ReferenceID:36978
Author/Investigator(s): Barker DG, Bruton CJ, Winter G.
Title: The tyrosyl-tRNA synthetase from Escherichia coli. Complete nucleotide sequence of the structural gene.
PubMed: 6761148
MedLine:
Source:
FEBS Lett. 1982 Dec 27;150(2):419-23.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=6761148
Homologs By Global Alignment
Gene ID:1406

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2558 PA4138_tr translation of PA4138 412 99.02 99.51 0 2100.0
80852 gb|AAG07525.1|AE004830_6 (AE004830) tyrosyl-tRNA synthetase [Pseudomonas aeruginosa PAO1] 412 98.78 99.51 0 2097.0
80854 emb|CAE27901.1| (BX572601) tyrosyl-tRNA synthetase [Rhodopseudomonas palustris CGA009] 421 49.64 66.03 12 1076.0
80853 dbj|BAB47686.1| (AP002994) tyrosyl-tRNA synthetase [Mesorhizobium loti] 421 49.40 65.55 13 1073.0
80859 emb|CAC46318.1| (AL591788) PROBABLE TYROSYL-TRNA SYNTHETASE PROTEIN [Sinorhizobium meliloti] 420 49.28 64.52 11 1054.0
GC ORFID: 44408How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4138Glimmer Score:
Start: 4055266Stop: 4054028
Length: 1239
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4138 translation of PA4138Homolog Bit Score 813.0
Other Homologs: t_PA4138 (ORF: GLIMMER)
GC ORF Sequence
GTGTCCGTCCCGACCCATCAGCAAGACCTGATCGCCCTGCTCGAAGAGCGTGGCTTCGTCCACCAGTGCACC
GACCGCGACGGCCTCGCCGCGCACCTGGCCGCCGGTCCGGCAACCGCCTACCTGGGCTTCGACGCCACCGCC
GACAGCCTGCACATCGGCCACCTGCAGGGCCTGATGCTGATGCGCTGGCTACAGAAGGCCGGGCACCGTCCG
TTGCTGCTGATCGGTGGCGCGACCACCCGGATCGGCGATCCGAGCTTCCGCGATTCGAGCCGGCCGATCCTC
ACCGAGGCGCAGATCCAGGCCAACATCGACGGCATCGCCCGGGTCTTCTCGCGCTACGTCGAACTGCACGAC
GACAGCCTGGTGAACAACGCCGAATGGCTGGACGGCGTCGGCTACCTGGAGTTCCTCGACCGGGTCGGCCGG
CACTTCTCGATCAACCGCCTGCTGACCTTCGACGCCATCAGGCAGCGCCTGGACCGCGAGCATTCGCTGTCG
TTCCTCGAGTTCGGCTACACCCTGCTGCAGGCCTACGACTTCGTCGAACTGTCGCGCCGGCGCGGCTGCACC
CTGCAACTCGGCGGCGCCGACCAGTGGGCGAACATCATCAACGGCGTGGAGCTGTCGCGACGCCAGGGCGGC
GCCCAACTGTTCGGCCTGACCATGCCGCTGCTGGCCACCAGCGACGGGCGCAAGATGGGCAAGTCGGCGCAG
GGTGCGGTATGGCTCAACGCCGAGCGCCTGGCGCCGTTCGACTTCTGGCAGTTCTGGCGCAACTGCGACGAT
CGCGACGTCGGTCGCTTCCTCGCCCTGTTCAGCGAACTGCCGATGGATGAGGTGCGCCGCCTGGGCGCCTTG
CAGGGCGCCGAGCTGAACGAAGCGAAGGTGGTCCTGGCCAATGCCGCCACCGCCCTGGCGCACGGCGAGCAC
GCCGCGCGATCCGCCGCCGATGCCGCGCGCGGGGTGTTCGCCGACGGTACGCGGGACAGCGGCCTGCCGATG
ATGAAGCTATCCCGCGCGCGCCTGGCGCAGGGACTGTCGCTGACCGACCTGCTGCTGGAGCACGCGATCCAG
CCCTCCCGCAGCGCGGTCCGCCGCCTCGCCGCCGGCGGCGGCCTGCGCCTGGACGGCACGCCGGTCAGCGAT
CCGGACGCGCCGCTGGCGGGCGAGGTCGACGGGCTGCGCCTGAGCCTGGGCAAGAAGCAGCATTTGCAACTG
CGACTCGAGGATTGA