ViewGene
Locus Name:
GeneID:
Location:

GeneID:1405
TrivialName: PA14_13620
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_13620
PAO1 Ortholog Locus:PA3887
Sequence Length:1275
Protein Length:424
Start: 1171554
Stop: 1172828
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07274.1|AE004806_1 (AE004806) Na+/H+ antiporter NhaP [Pseudomonas aeruginosa PAO1]
Identities = 423/424 (99%), Positives = 424/424 (100%)
Sequence:
ATGCTCGATCTCGTCGCGGCATTCATTGCCTTGACCACCTTGCTCACCTACGTCAACTACCGCTTCATCCGC
CTGCCGCCGACCATCGGCGTGATGGCCACGGCGCTGGTGTTCTCGCTGATCGTCCAGGGTCTGTCGGAACTG
GGCTATCCGATCCTCGAGGTGGAGATGCAGGAAATCATCCGCCGCATCGACTTCTCCGAAGTGCTGATGACC
TGGTTCCTGCCCGCGCTGCTGTTCGCCGGCGCACTGCACGTCGACCTCTCCGACCTGCGCAGCTACAAGTGG
CCGATCGGCCTGCTAGCCACCGCCGGGGTGCTGATCGCCACCTTCGTCATCGGTGGCCTGGCCTACTACACC
TTCCCGCTGTTCGGCTGGCAGGTGGATTTCATCTACTGCCTGCTGTTCGGCGCGCTGATCTCGCCGACCGAC
CCCATCGCCGTGCTCGGCATCCTCAAGTCCGCCGGCGCGCCGAAACCGCTGGCGACCACCATCGTCGGCGAG
TCGCTGTTCAACGACGGCACCGCGGTGGTGGTGTTCGCCATCATCCTCGGCATCCTCCAGCTCGGCGAGGCG
CCCACGGTCAGTGCCACGGCGATCCTCTTCGTCCAGGAAGCCATCGGCGGCGTGCTTTTCGGCGCGGTGCTC
GGCTACGGCGTGTTCGTGATGATGCGCGGCATCGACCAGTACCAGGTGGAGGTCATGCTGACCCTCGCCCTG
GTCATCGGCGGCGCCGCGCTGGCCGCGCGCCTGCACGTATCGGCGCCGATCGCGATGGTGGTGGCCGGGCTG
ATCATCGGCAACCACGGACGCCACTACGCGATGTCGGACGAGACCCGGCGCTACGTGGACAAGTTCTGGGAG
CTGATCGACGAGATCCTCAACGCCCTACTGTTCGCCCTGATCGGCCTGGAGCTGCTGCTGTTGCCGTTCTCC
TGGCTGCACGTGGCGGCGGCCTTCGCTCTCGGCGGCGCGGTGCTGGTCTCGCGCCTGCTCACGGTGGGGCCG
GCGATCCTGGTCCTGCGCCGTTTCCGTGGCGCCAACCGGCAGGTACCGGCGGGCACCATCCGCATCCTGGTC
TGGGGCGGGCTGCGCGGCGGCGTCTCGGTGGCGCTGGCGCTGTCCCTGCCGCTGGGGCCGGAGCGCGACCTG
ATCCTCAGCCTGACCTACATCGTGGTGCTGGTATCGATCCTGCTCCAGGGGCTTTCCATCGGCCCGCTGGTG
CGTCGTATCTACGCCGGCCAGCCGCTGGAGAAAAGCGAGGGGGCGCACTGA
Translation:
MLDLVAAFIALTTLLTYVNYRFIRLPPTIGVMATALVFSLIVQGLSELGYPILEVEMQEIIRRIDFSEVLMT
WFLPALLFAGALHVDLSDLRSYKWPIGLLATAGVLIATFVIGGLAYYTFPLFGWQVDFIYCLLFGALISPTD
PIAVLGILKSAGAPKPLATTIVGESLFNDGTAVVVFAIILGILQLGEAPTVSATAILFVQEAIGGVLFGAVL
GYGVFVMMRGIDQYQVEVMLTLALVIGGAALAARLHVSAPIAMVVAGLIIGNHGRHYAMSDETRRYVDKFWE
LIDEILNALLFALIGLELLLLPFSWLHVAAAFALGGAVLVSRLLTVGPAILVLRRFRGANRQVPAGTIRILV
WGGLRGGVSVALALSLPLGPERDLILSLTYIVVLVSILLQGLSIGPLVRRIYAGQPLEKSEGAH*
AnnotationID:1414GeneID:1405
AnnotatorUID: danlee
Modification Date/Time: 2006-06-02 11:11:31
Gene Name:nhaP
Confidence Code:1
GeneProduct:Na+/H+ antiporter NhaP
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0025,pfam00999
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70541.1|AE016696_6 (AE016792) Na+/H+ antiporter, putative [Pseudomonas putida KT2440]
          Length = 411

 Score =  586 bits (1510), Expect = e-166
 Identities = 300/413 (72%), Positives = 356/413 (86%), Gaps = 4/413 (0%)

>gb|AAO53910.1| (AE016857) Na+/H+ antiporter NhaP [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 419

 Score =  585 bits (1507), Expect = e-166






 
Structural Features:
COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters 
[Inorganic ion transport and metabolism]
CD-Length = 429 residues,  95.6% aligned
Score =  191 bits (487), Expect = 3e-49
Identities = 141/416 (33%), Positives = 208/416 (50%), Gaps = 15/416 (3%)

pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family.
CD-Length = 397 residues,  99.0% aligned
Score =  185 bits (470), Expect = 2e-47
Identities = 137/411 (33%), Positives = 209/411 (50%), Gaps = 25/411 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2813




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19958




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31679




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1405_cdd.html


    		




 
URL:

















    ReferenceID:34346




  
Author/Investigator(s):
        Utsugi J, Inaba K, Kuroda T, Tsuda M, Tsuchiya T.





  
Title:
        Cloning and sequencing of a novel Na+/H+ antiporter gene from Pseudomonas aeruginosa.




  
PubMed:
        9655928


MedLine:
        




    
Source:
Biochim Biophys Acta. 1998 Jul 9;1398(3):330-4.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9655928









           
Homologs By Global Alignment 

           

       



     
Gene ID:1405
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2557
                           PA3887_tr
                           translation of PA3887
                           424
                           99.76
                           99.99
                           0
                           2100.0
     

     
     
80840
                           gb|AAG07274.1|AE004806_1
                           (AE004806) Na+/H+ antiporter NhaP [Pseudomonas aeruginosa PAO1]
                           424
                           99.76
                           99.99
                           0
                           2100.0
     

     
     
80841
                           dbj|BAA31695.1|
                           (AB010827) NhaP [Pseudomonas aeruginosa]
                           424
                           99.76
                           99.99
                           0
                           2100.0
     

     
     
80842
                           gb|AAN70541.1|AE016696_6
                           (AE016792) Na+/H+ antiporter, putative [Pseudomonas putida KT2440]
                           424
                           71.22
                           84.43
                           13
                           1515.0
     

     
     
80843
                           gb|AAO53910.1|
                           (AE016857) Na+/H+ antiporter NhaP [Pseudomonas syringae pv. tomato str. DC3000]
                           424
                           70.51
                           83.72
                           5
                           1512.0
     

     






      

          
GC ORFID: 44407How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3887Glimmer Score: 

          
Start: 3782384Stop: 3781110

          
Length: 1275


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3887 translation of PA3887Homolog Bit Score 813.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6884 (ORF: BLASTX 587.0), t_PA3887 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTCGATCTCGTCGCGGCATTCATTGCCTTGACCACCTTGCTCACCTACGTCAACTACCGCTTCATCCGC 
CTGCCGCCGACCATCGGCGTGATGGCCACGGCGCTGGTGTTCTCGCTGATCGTCCAGGGTCTGTCGGAACTG 
GGCTATCCGATCCTCGAGGTGGAGATGCAGGAAATCATCCGCCGCATCGACTTCTCCGAAGTGCTGATGACC 
TGGTTCCTGCCCGCGCTGCTGTTCGCCGGCGCACTGCACGTCGACCTCTCCGACCTGCGCAGCTACAAGTGG 
CCGATCGGCCTGCTAGCCACCGCCGGGGTGCTGATCGCCACCTTCGTCATCGGTGGCCTGGCCTACTACACC 
TTCCCGCTGTTCGGCTGGCAGGTGGATTTCATCTACTGCCTGCTGTTCGGCGCGCTGATCTCGCCGACCGAC 
CCCATCGCCGTGCTCGGCATCCTCAAGTCCGCCGGCGCGCCGAAACCGCTGGCGACCACCATCGTCGGCGAG 
TCGCTGTTCAACGACGGCACCGCGGTGGTGGTGTTCGCCATCATCCTCGGCATCCTCCAGCTCGGCGAGGCG 
CCCACGGTCAGTGCCACGGCGATCCTCTTCGTCCAGGAAGCCATCGGCGGCGTGCTTTTCGGCGCGGTGCTC 
GGCTACGGCGTGTTCGTGATGATGCGCGGCATCGACCAGTACCAGGTGGAGGTCATGCTGACCCTCGCCCTG 
GTCATCGGCGGCGCCGCGCTGGCCGCGCGCCTGCACGTATCGGCGCCGATCGCGATGGTGGTGGCCGGGCTG 
ATCATCGGCAACCACGGACGCCACTACGCGATGTCGGACGAGACCCGGCGCTACGTGGACAAGTTCTGGGAG 
CTGATCGACGAGATCCTCAACGCCCTACTGTTCGCCCTGATCGGCCTGGAGCTGCTGCTGTTGCCGTTCTCC 
TGGCTGCACGTGGCGGCGGCCTTCGCTCTCGGCGGCGCGGTGCTGGTCTCGCGCCTGCTCACGGTGGGGCCG 
GCGATCCTGGTCCTGCGCCGTTTCCGTGGCGCCAACCGGCAGGTACCGGCGGGCACCATCCGCATCCTGGTC 
TGGGGCGGGCTGCGCGGCGGCGTCTCGGTGGCGCTGGCGCTGTCCCTGCCGCTGGGGCCGGAGCGCGACCTG 
ATCCTCAGCCTGACCTACATCGTGGTGCTGGTATCGATCCTGCTCCAGGGGCTTTCCATCGGCCCGCTGGTG 
CGTCGTATCTACGCCGGCCAGCCGCTGGAGAAAAGCGAGGGGGCGCACTGA