ViewGene
Locus Name:
GeneID:
Location:

GeneID:1404
TrivialName: PA14_52810
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52810
PAO1 Ortholog Locus:PA0886
Sequence Length:1284
Protein Length:427
Start: 4683386
Stop: 4682103
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04275.1|AE004523_3 (AE004523) probable C4-dicarboxylate transporter [Pseudomonas aeruginosa PAO1]
Identities = 427/427 (100%), Positives = 427/427 (100%)
Sequence:
ATGACCGTGCTGATCCTGTTCCTGCTGCTGTTCCTGTTCATGTTCATCGGCGTGCCCATCGCCATCTCCCTG
GGGCTGTCCGGCGCCCTGACGATCCTGCTGTTCAGCCCGGATTCGGTGCGCTCGCTGGCGATCAAGCTGTTC
GAGACCTCCGAGGCCTACACCCTGCTGGCGATCCCGTTCTTCCTGCTCTCCGGCGCGTTCATGACCACCGGT
GGCGTGGCGCGGCGCCTGATCGACTTCGCCAATGCCTGCGTCGGGCATATCCGCGGCGGCCTGGCGATCGCT
GCGGTGCTCGCCTGCATGCTGTTCGCCGCGCTGTCCGGTTCGTCGCCGGCGACGGTGGCGGCGGTCGGCTCG
ATCGCCGTGGCCGGCATGGTCCGCTCCGGCTATCCGCGCGCCTTCGGCGCGGGGATCATCTGCAACGCCGGG
ACCCTGGGTATCCTCATCCCGCCATCGATCGTGATGGTGGTCTACGCCGCCGCCACCGAGACCTCGGTGGGC
AAGCTGTTCGTCGCCGGGGTGGTTCCGGGGCTGCTGCTCGGGGTGATCCTGATGGTGGTGATCTACATCGTC
GCACGGGTCAAGAAGCTGCCGGCGCAGCCGCGCGCCAGCTTCCGCGAGTGGCTGGCCGCCGCACGCCGTGCA
GGCTGGGGCCTGTTGTTGCTGGTGATCATCCTCGGCGGCATCTATTCCGGGCTGTTCACCCCCACCGAGGCG
GCGGCGGTGGCGGCAGTGTACTCGGCCTTCGTCGCGCTGTTCGTGTACAAGGACATGCGTCTGCGCGACTGT
CCCAAGGTGCTGCTGGAGTCGGGGCGGCTGAGCATCATGCTGATGTTCATCATCGCCAACGCCATGCTCTTC
GCCCACGTGTTGACCACCGAGCAGATCCCCCAGCAGATCACCGAATGGGTGGTGCAGGAAGGCCTGACCCCG
ATCGGCTTCCTGCTGATGGTCAACGTGGTGCTGCTGGTCGCCGGCAGCTTCATGGAGCCCTCGGCGATCGTG
CTGATCCTGGCGCCGATCTTCTTCCCCATCGCCATGAAGCTGGGCATCGACCCGATCCACCTGGGCATCGTC
ATGGTGGTGAACATGGAGATCGGCCTGGTACACCCGCCGGTCGGCCTCAACCTGTTCGTCACTTCGGCGGTC
ACTGGCATGCCGCTGGGGGCGACCATCCGCGCGGCGCTGCCGTGGCTGATGATCCTGCTGCTGTTCCTGATC
CTGGTGACCTACGTGCCGTTGATCTCGCTGTGGCTGCCGGGCCTGCTGGGCATGAGTTGA
Translation:
MTVLILFLLLFLFMFIGVPIAISLGLSGALTILLFSPDSVRSLAIKLFETSEAYTLLAIPFFLLSGAFMTTG
GVARRLIDFANACVGHIRGGLAIAAVLACMLFAALSGSSPATVAAVGSIAVAGMVRSGYPRAFGAGIICNAG
TLGILIPPSIVMVVYAAATETSVGKLFVAGVVPGLLLGVILMVVIYIVARVKKLPAQPRASFREWLAAARRA
GWGLLLLVIILGGIYSGLFTPTEAAAVAAVYSAFVALFVYKDMRLRDCPKVLLESGRLSIMLMFIIANAMLF
AHVLTTEQIPQQITEWVVQEGLTPIGFLLMVNVVLLVAGSFMEPSAIVLILAPIFFPIAMKLGIDPIHLGIV
MVVNMEIGLVHPPVGLNLFVTSAVTGMPLGATIRAALPWLMILLLFLILVTYVPLISLWLPGLLGMS*
AnnotationID:1413GeneID:1404
AnnotatorUID: danlee
Modification Date/Time: 2004-05-03 15:03:01
Gene Name:
Confidence Code:3
GeneProduct:probable C4-dicarboxylate transporter
Cell Localization:()
Synonyms:PA0886, dctM
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease 
component. Score: 362, 9e-101
COG4664, FcbT3, TRAP-type mannitol/chloroaromatic compound transport system, large 
permease component. Score: 198, 2e-51






   
Genomic Context:






   
Comment:


















    ReferenceID:2811




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19956




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1404
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2555
                           PA0886_tr
                           translation of PA0886
                           427
                           99.99
                           99.99
                           0
                           2100.0
     

     
     
80807
                           gb|AAG04275.1|AE004523_3
                           (AE004523) probable C4-dicarboxylate transporter [Pseudomonas aeruginosa PAO1]
                           427
                           99.99
                           99.99
                           0
                           2100.0
     

     
     
2556
                           PA5169_tr
                           translation of PA5169
                           427
                           88.52
                           95.08
                           0
                           1901.0
     

     
     
80808
                           gb|AAG08554.1|AE004929_9
                           (AE004929) probable C4-dicarboxylate transporter [Pseudomonas aeruginosa PAO1]
                           427
                           88.52
                           95.08
                           0
                           1901.0
     

     
     
80809
                           emb|CAC44173.1|
                           (AJ313422) probable C4-dicarboxylate transporter [Pseudomonas stutzeri]
                           427
                           81.26
                           90.39
                           1
                           1761.0
     

     






      

          
GC ORFID: 44406How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0886Glimmer Score: 

          
Start: 270521Stop: 271804

          
Length: 1284


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0886 translation of PA0886Homolog Bit Score 813.0

          
Other Homologs:  t_PA5169 (ORF: BLASTX 736.0), psyr_15may02_Scaffold3_revised_gene5129 (ORF: BLASTX 328.0), t_PA0886 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGTGCTGATCCTGTTCCTGCTGCTGTTCCTGTTCATGTTCATCGGCGTGCCCATCGCCATCTCCCTG 
GGGCTGTCCGGCGCCCTGACGATCCTGCTGTTCAGCCCGGATTCGGTGCGCTCGCTGGCGATCAAGCTGTTC 
GAGACCTCCGAGGCCTACACCCTGCTGGCGATCCCGTTCTTCCTGCTCTCCGGCGCGTTCATGACCACCGGT 
GGCGTGGCGCGGCGCCTGATCGACTTCGCCAATGCCTGCGTCGGGCATATCCGCGGCGGCCTGGCGATCGCT 
GCGGTGCTCGCCTGCATGCTGTTCGCCGCGCTGTCCGGTTCGTCGCCGGCGACGGTGGCGGCGGTCGGCTCG 
ATCGCCGTGGCCGGCATGGTCCGCTCCGGCTATCCGCGCGCCTTCGGCGCGGGGATCATCTGCAACGCCGGG 
ACCCTGGGTATCCTCATCCCGCCATCGATCGTGATGGTGGTCTACGCCGCCGCCACCGAGACCTCGGTGGGC 
AAGCTGTTCGTCGCCGGGGTGGTTCCGGGGCTGCTGCTCGGGGTGATCCTGATGGTGGTGATCTACATCGTC 
GCACGGGTCAAGAAGCTGCCGGCGCAGCCGCGCGCCAGCTTCCGCGAGTGGCTGGCCGCCGCACGCCGTGCA 
GGCTGGGGCCTGTTGTTGCTGGTGATCATCCTCGGCGGCATCTATTCCGGGCTGTTCACCCCCACCGAGGCG 
GCGGCGGTGGCGGCAGTGTACTCGGCCTTCGTCGCGCTGTTCGTGTACAAGGACATGCGTCTGCGCGACTGT 
CCCAAGGTGCTGCTGGAGTCGGGGCGGCTGAGCATCATGCTGATGTTCATCATCGCCAACGCCATGCTCTTC 
GCCCACGTGTTGACCACCGAGCAGATCCCCCAGCAGATCACCGAATGGGTGGTGCAGGAAGGCCTGACCCCG 
ATCGGCTTCCTGCTGATGGTCAACGTGGTGCTGCTGGTCGCCGGCAGCTTCATGGAGCCCTCGGCGATCGTG 
CTGATCCTGGCGCCGATCTTCTTCCCCATCGCCATGAAGCTGGGCATCGACCCGATCCACCTGGGCATCGTC 
ATGGTGGTGAACATGGAGATCGGCCTGGTACACCCGCCGGTCGGCCTCAACCTGTTCGTCACTTCGGCGGTC 
ACTGGCATGCCGCTGGGGGCGACCATCCGCGCGGCGCTGCCGTGGCTGATGATCCTGCTGCTGTTCCTGATC 
CTGGTGACCTACGTGCCGTTGATCTCGCTGTGGCTGCCGGGCCTGCTGGGCATGAGTTGA