ViewGene
Locus Name:
GeneID:
Location:

GeneID:1403
TrivialName: PA14_07620
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07620
PAO1 Ortholog Locus:PA0584
Sequence Length:1233
Protein Length:410
Start: 655984
Stop: 654752
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03973.1|AE004494_9 (AE004494) tRNA nucleotidyl transferase [Pseudomonas aeruginosa PAO1]
Identities = 408/410 (99%), Positives = 410/410 (100%)
Sequence:
ATGCAGATTTACAAGGTCGGCGGCGCCGTGCGCGATCGCCTTCTCGGCCGTCCGGTCACCGATATCGACTGG
GTGGTGGTCGGTGCCAGCAGCGACGAGATGCTCGCCCGCGGCTACCGCCCGGTGGGCGCCGACTTCCCGGTC
TTCCTTCATCCGCAGAGCGGCGAGGAATACGCCCTGGCGCGCACCGAGCGAAAGAGCGGGCGCGGCTACGGC
GGCTTCACCTTCCATGCCAGCCCCGAGGTGACCCTGGAGGAAGACCTGACTCGCCGTGACCTGACCATCAAC
GCCATGGCCGAGGACGAACAGGGCCGGGTAATAGATCCCTACGGCGGCCAGGCAGACCTCGAGGCGCGCCTG
CTGCGCCACGTTTCCCCGGCGTTCGCCGAGGATCCCCTGCGGGTCCTGCGCGTAGCGCGCTTCGCCGCCCGC
TACGCCGGCCTGGGCTTCCGGATCGCCGCCGAAACCCTCGCCCTGATGCGCCAACTGGCGGAATCCGGCGAG
TTGCAGGCGCTGACCCCGGAGCGCAGTTGGAAGGAAATTTCCCGAGCCCTGATGGAACCCAACCCCGAGGTC
TTCATCCAGGTCCTGCACGACTGCGGCGCCCTGGCCGAACTGATCCCGGAAGTCGAGGCGCTGTTCGGCGTA
CCGCAGCCGGCGGCCCACCATCCGGAAATCGATACCGGCGTCCATGTCCTGTCGGTATTGCAGCAATGCGCC
CGCCACCGGCAGCCGCTCAGCGTACGCTGGGCTTGCCTCCTGCACGACCTGGGCAAGGGACTCACCAGCGAA
GCGGACTGGCCCCGCCATATCGCCCACGAGGCTCGCGGCGTGCCGTTGATCGATGCGGTGAACCAGCGCTTC
AGGGTGCCGCGCGACTGCCAGGAACTGGCGCGCCTGGTGGGCGAGTACCACACCCACGCCCATCGGGCGCTG
GAGCTGCGCCCTAATACACTGCTGGAGCTGTTGCAGAGCTTCGACGTGTATCGCCGCCCGCAGCGTTTCGAG
GAGTTCGTCGCCGCCAGCGAGATGGACGCGCGCGGCCGCCTCGGCCTGGAACAGCGGGACTATCCGCAGGCC
GCCTACCTGCTCGGCGCGGCGCAGGCAGCGCGGGCAGTCAGCGTGAAGCCGCTGGTGGAAAAGGGCTTGAAG
GGCGCGGAACTGGGCGAGGCGCTGAAGCGTGCGCGCCTCGCCGCACTCAAGGCCTACAAGGAAGAACGCGGA
AAGGCCTGA
Translation:
MQIYKVGGAVRDRLLGRPVTDIDWVVVGASSDEMLARGYRPVGADFPVFLHPQSGEEYALARTERKSGRGYG
GFTFHASPEVTLEEDLTRRDLTINAMAEDEQGRVIDPYGGQADLEARLLRHVSPAFAEDPLRVLRVARFAAR
YAGLGFRIAAETLALMRQLAESGELQALTPERSWKEISRALMEPNPEVFIQVLHDCGALAELIPEVEALFGV
PQPAAHHPEIDTGVHVLSVLQQCARHRQPLSVRWACLLHDLGKGLTSEADWPRHIAHEARGVPLIDAVNQRF
RVPRDCQELARLVGEYHTHAHRALELRPNTLLELLQSFDVYRRPQRFEEFVAASEMDARGRLGLEQRDYPQA
AYLLGAAQAARAVSVKPLVEKGLKGAELGEALKRARLAALKAYKEERGKA*
AnnotationID:1412GeneID:1403
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 08:08:02
Gene Name:cca
Confidence Code:2
GeneProduct:tRNA nucleotidyl transferase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(24) Transcription, RNA processing and degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0617,pfam01743
Secondary Functional Category(ies):
EC Number:2.7.7.21
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54086.1| (AE016857) tRNA nucleotidyltransferase [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 409

 Score =  671 bits (1731), Expect = 0.0
 Identities = 330/404 (81%), Positives = 361/404 (89%)

>gb|AAN66025.1|AE016231_8 (AE016775) tRNA nucleotidyltransferase, putative [Pseudomonas
           putida KT2440]
          Length = 368

 Score =  499 bits (1286), Expect = e-141
 Identities = 270/406 (66%), Positives = 301/406 (74%), Gaps = 42/406 (10%)

>gb|AAL22078.1| (AE008847) tRNA nucleotidyl transferase [Salmonella typhimurium
           LT2]
          Length = 413

 Score =  488 bits (1256), Expect = e-137
 Identities = 249/407 (61%), Positives = 294/407 (72%)








 
Structural Features:
COG0617, PcnB, tRNA nucleotidyltransferase/poly(A) polymerase 
[Translation, ribosomal structure and biogenesis]
CD-Length = 412 residues,  92.0% aligned
Score =  281 bits (721), Expect = 7e-77
Identities = 143/393 (36%), Positives = 183/393 (46%), Gaps = 20/393 (5%)

pfam01743, PolyA_pol, Poly A polymerase family. 
CD-Length = 158 residues, 100.0% aligned
Score =  127 bits (321), Expect = 2e-30
Identities = 64/163 (39%), Positives = 84/163 (51%), Gaps = 9/163 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2809




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19954




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33880




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1403_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1403
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2554
                           PA0584_tr
                           translation of PA0584
                           410
                           99.51
                           99.99
                           0
                           2103.0
     

     
     
80767
                           gb|AAG03973.1|AE004494_9
                           (AE004494) tRNA nucleotidyl transferase [Pseudomonas aeruginosa PAO1]
                           410
                           99.51
                           99.99
                           0
                           2103.0
     

     
     
80768
                           gb|AAO54086.1|
                           (AE016857) tRNA nucleotidyltransferase [Pseudomonas syringae pv. tomato str. DC3000]
                           411
                           80.53
                           88.07
                           3
                           1724.0
     

     
     
80769
                           gb|AAN66025.1|AE016231_8
                           (AE016775) tRNA nucleotidyltransferase, putative [Pseudomonas putida KT2440]
                           412
                           66.01
                           73.54
                           46
                           1314.0
     

     
     
80770
                           gb|AAL22078.1|
                           (AE008847) tRNA nucleotidyl transferase [Salmonella typhimurium LT2]
                           413
                           60.29
                           71.18
                           3
                           1250.0
     

     






      

          
GC ORFID: 44405How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0584Glimmer Score: 

          
Start: 6457327Stop: 6456095

          
Length: 1233


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0584 translation of PA0584Homolog Bit Score 814.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6763 (ORF: BLASTX 676.0), t_PA0584 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAGATTTACAAGGTCGGCGGCGCCGTGCGCGATCGCCTTCTCGGCCGTCCGGTCACCGATATCGACTGG 
GTGGTGGTCGGTGCCAGCAGCGACGAGATGCTCGCCCGCGGCTACCGCCCGGTGGGCGCCGACTTCCCGGTC 
TTCCTTCATCCGCAGAGCGGCGAGGAATACGCCCTGGCGCGCACCGAGCGAAAGAGCGGGCGCGGCTACGGC 
GGCTTCACCTTCCATGCCAGCCCCGAGGTGACCCTGGAGGAAGACCTGACTCGCCGTGACCTGACCATCAAC 
GCCATGGCCGAGGACGAACAGGGCCGGGTAATAGATCCCTACGGCGGCCAGGCAGACCTCGAGGCGCGCCTG 
CTGCGCCACGTTTCCCCGGCGTTCGCCGAGGATCCCCTGCGGGTCCTGCGCGTAGCGCGCTTCGCCGCCCGC 
TACGCCGGCCTGGGCTTCCGGATCGCCGCCGAAACCCTCGCCCTGATGCGCCAACTGGCGGAATCCGGCGAG 
TTGCAGGCGCTGACCCCGGAGCGCAGTTGGAAGGAAATTTCCCGAGCCCTGATGGAACCCAACCCCGAGGTC 
TTCATCCAGGTCCTGCACGACTGCGGCGCCCTGGCCGAACTGATCCCGGAAGTCGAGGCGCTGTTCGGCGTA 
CCGCAGCCGGCGGCCCACCATCCGGAAATCGATACCGGCGTCCATGTCCTGTCGGTATTGCAGCAATGCGCC 
CGCCACCGGCAGCCGCTCAGCGTACGCTGGGCTTGCCTCCTGCACGACCTGGGCAAGGGACTCACCAGCGAA 
GCGGACTGGCCCCGCCATATCGCCCACGAGGCTCGCGGCGTGCCGTTGATCGATGCGGTGAACCAGCGCTTC 
AGGGTGCCGCGCGACTGCCAGGAACTGGCGCGCCTGGTGGGCGAGTACCACACCCACGCCCATCGGGCGCTG 
GAGCTGCGCCCTAATACACTGCTGGAGCTGTTGCAGAGCTTCGACGTGTATCGCCGCCCGCAGCGTTTCGAG 
GAGTTCGTCGCCGCCAGCGAGATGGACGCGCGCGGCCGCCTCGGCCTGGAACAGCGGGACTATCCGCAGGCC 
GCCTACCTGCTCGGCGCGGCGCAGGCAGCGCGGGCAGTCAGCGTGAAGCCGCTGGTGGAAAAGGGCTTGAAG 
GGCGCGGAACTGGGCGAGGCGCTGAAGCGTGCGCGCCTCGCCGCACTCAAGGCCTACAAGGAAGAACGCGGA 
AAGGCCTGA