ViewGene
Locus Name:
GeneID:
Location:

GeneID:1402
TrivialName: PA14_05820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05820
PAO1 Ortholog Locus:PA0446
Sequence Length:1224
Protein Length:407
Start: 515878
Stop: 514655
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03835.1|AE004482_2 (AE004482) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 407/407 (100%), Positives = 407/407 (100%)
Sequence:
ATGCCCGGCGCCCTTTCCCATATCCGCGTACTCGACCTGTCCCGTGTCCTGGCCGGCCCTTGGGCCGGGCAG
ATTCTCGCCGACCTCGGCGCCGAGGTGATCAAGATCGAGCGCCCCGGCAGCGGCGACGACACCCGCGCCTGG
GGCCCGCCGTTCCTCAAGGATGCCGAAGGCAACGACACCAGCGAGGCGGCCTACTACCTGTCGGCCAACCGC
AACAAGAAGTCGGTGACGGTGGACTTCACCCAGCCGGAAGGCCAGCGCATCGTTCGCGAATTGGCGGCCAAG
GCCGACATCCTGCTGGAGAACTTCAAGGTCGGCGGGCTCAAGGCCTATGGCCTCGACTATGAATCGCTGAAG
CAGGTCAACCCGAAGCTGATCTACTGTTCGATCACCGGCTTCGGCCAGTCCGGCCCCTATGCCAAGCGCGCC
GGCTATGACTTCATGATCCAGGGCCTGGGCGGCCTGATGAGCCTCACCGGGCGCGCCGACAACGAGGAAGGC
GCCGGTCCGGTGAAGGTCGGCGTGGCGCTGACCGATATCCTCACCGGGCTGTACTCCTCCACCGCGGTGCTC
GCCGCCCTCGCCCACCGCGACGTCAGCGGCATCGGCCAGCACATCGACATGGCCCTGCTCGACGTGCAGGTC
GCCTGCCTGGCCAACCAGACCCTCAACTACCTGACCACCGGCGTGCCGCCGCGGCGCCTGGGCAACGCACAC
CCGAACATCGTGCCGTACCAGGACTTCCCCACCGCCGACGGCGACATGATCCTCACGGTCGGCAACGACAGC
CAGTTCCGCAAGTTCGCCGAGCTGGCAGACCACCCGGAATGGGCCGACGACCCGCGCTTCGCCACCAACAAG
GCGCGGGTGGCCAACCGCGAGGTGCTGATCCCGCTGATCCGCCAGGCCACGGTGCTGCACACCACCGCCGAG
TGGATTCTTTCCCTGGAGCGCGCCGGCGTGCCCTGCGGGCCGATCAACGACCTGGCGCAAGTGTTCGCCGAC
CCGCAGGTGCAGGCCCGCGGCCTGCGCGTGGAGCTACCGCACCCGCTGGCCGGGACGGTTCCGCAGGTAGCC
AGCCCGATCCGCCTGTCCGAGACGCCGGTGGAATACCGCAACCCGCCGCCCACCCTCGGCCAGCACACCGAC
GAGGTCCTCGAGACGCTCCTCGGCCTGGACGCGGCCGCGCTGGAAAGGCTGCGCGACGGCAAGGTGATCTGA
Translation:
MPGALSHIRVLDLSRVLAGPWAGQILADLGAEVIKIERPGSGDDTRAWGPPFLKDAEGNDTSEAAYYLSANR
NKKSVTVDFTQPEGQRIVRELAAKADILLENFKVGGLKAYGLDYESLKQVNPKLIYCSITGFGQSGPYAKRA
GYDFMIQGLGGLMSLTGRADNEEGAGPVKVGVALTDILTGLYSSTAVLAALAHRDVSGIGQHIDMALLDVQV
ACLANQTLNYLTTGVPPRRLGNAHPNIVPYQDFPTADGDMILTVGNDSQFRKFAELADHPEWADDPRFATNK
ARVANREVLIPLIRQATVLHTTAEWILSLERAGVPCGPINDLAQVFADPQVQARGLRVELPHPLAGTVPQVA
SPIRLSETPVEYRNPPPTLGQHTDEVLETLLGLDAAALERLRDGKVI*
AnnotationID:1411GeneID:1402
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 13:01:37
Gene Name:
Confidence Code:3
GeneProduct:putative acyl-CoA transferase
Cell Localization:()
Synonyms:PA0446
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:putative carnitine dehydratase
Functional Category Confidence Code:5
COGs:COG1804,pfam02515
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65792.1|AE016205_5 (AE016774) CAIB/BAIF family protein [Pseudomonas putida KT2440]
          Length = 406

 Score =  691 bits (1783), Expect = 0.0
 Identities = 333/405 (82%), Positives = 368/405 (90%)

>gb|AAO58880.1| (AE016875) CAIB/BAIF family protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 406

 Score =  648 bits (1671), Expect = 0.0
 Identities = 319/405 (78%), Positives = 350/405 (86%)

>emb|CAD14498.1| (AL646061) PUTATIVE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
          Length = 420

 Score =  542 bits (1397), Expect = e-153
 Identities = 265/405 (65%), Positives = 320/405 (79%)






 
Structural Features:
COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase 
[Energy production and conversion]
CD-Length = 396 residues,  99.2% aligned
Score =  460 bits (1186), Expect = 1e-130
Identities = 207/408 (50%), Positives = 262/408 (64%), Gaps = 16/408 (3%)

pfam02515, CoA_transf_3, CoA-transferase family III.
CD-Length = 192 residues,  99.5% aligned
Score =  193 bits (493), Expect = 2e-50
Identities = 79/195 (40%), Positives = 111/195 (56%), Gaps = 6/195 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2807




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19952




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33766




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1402_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1402
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2552
                           PA0446_tr
                           translation of PA0446
                           407
                           99.99
                           99.99
                           0
                           2102.0
     

     
     
80701
                           gb|AAG03835.1|AE004482_2
                           (AE004482) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           407
                           99.99
                           99.99
                           0
                           2102.0
     

     
     
80702
                           gb|AAN65792.1|AE016205_5
                           (AE016774) CAIB/BAIF family protein [Pseudomonas putida KT2440]
                           407
                           81.81
                           90.41
                           1
                           1781.0
     

     
     
80703
                           gb|AAO58880.1|
                           (AE016875) CAIB/BAIF family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           407
                           78.37
                           85.99
                           1
                           1669.0
     

     
     
80705
                           emb|CAE34946.1|
                           (BX640451) conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           410
                           64.14
                           76.09
                           4
                           1390.0
     

     






      

          
GC ORFID: 44404How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0446Glimmer Score: 

          
Start: 6317220Stop: 6315997

          
Length: 1224


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0446 translation of PA0446Homolog Bit Score 814.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4220 (ORF: BLASTX 658.0), t_PA3592 (ORF: BLASTX 304.0), t_PA0446 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCGGCGCCCTTTCCCATATCCGCGTACTCGACCTGTCCCGTGTCCTGGCCGGCCCTTGGGCCGGGCAG 
ATTCTCGCCGACCTCGGCGCCGAGGTGATCAAGATCGAGCGCCCCGGCAGCGGCGACGACACCCGCGCCTGG 
GGCCCGCCGTTCCTCAAGGATGCCGAAGGCAACGACACCAGCGAGGCGGCCTACTACCTGTCGGCCAACCGC 
AACAAGAAGTCGGTGACGGTGGACTTCACCCAGCCGGAAGGCCAGCGCATCGTTCGCGAATTGGCGGCCAAG 
GCCGACATCCTGCTGGAGAACTTCAAGGTCGGCGGGCTCAAGGCCTATGGCCTCGACTATGAATCGCTGAAG 
CAGGTCAACCCGAAGCTGATCTACTGTTCGATCACCGGCTTCGGCCAGTCCGGCCCCTATGCCAAGCGCGCC 
GGCTATGACTTCATGATCCAGGGCCTGGGCGGCCTGATGAGCCTCACCGGGCGCGCCGACAACGAGGAAGGC 
GCCGGTCCGGTGAAGGTCGGCGTGGCGCTGACCGATATCCTCACCGGGCTGTACTCCTCCACCGCGGTGCTC 
GCCGCCCTCGCCCACCGCGACGTCAGCGGCATCGGCCAGCACATCGACATGGCCCTGCTCGACGTGCAGGTC 
GCCTGCCTGGCCAACCAGACCCTCAACTACCTGACCACCGGCGTGCCGCCGCGGCGCCTGGGCAACGCACAC 
CCGAACATCGTGCCGTACCAGGACTTCCCCACCGCCGACGGCGACATGATCCTCACGGTCGGCAACGACAGC 
CAGTTCCGCAAGTTCGCCGAGCTGGCAGACCACCCGGAATGGGCCGACGACCCGCGCTTCGCCACCAACAAG 
GCGCGGGTGGCCAACCGCGAGGTGCTGATCCCGCTGATCCGCCAGGCCACGGTGCTGCACACCACCGCCGAG 
TGGATTCTTTCCCTGGAGCGCGCCGGCGTGCCCTGCGGGCCGATCAACGACCTGGCGCAAGTGTTCGCCGAC 
CCGCAGGTGCAGGCCCGCGGCCTGCGCGTGGAGCTACCGCACCCGCTGGCCGGGACGGTTCCGCAGGTAGCC 
AGCCCGATCCGCCTGTCCGAGACGCCGGTGGAATACCGCAACCCGCCGCCCACCCTCGGCCAGCACACCGAC 
GAGGTCCTCGAGACGCTCCTCGGCCTGGACGCGGCCGCGCTGGAAAGGCTGCGCGACGGCAAGGTGATCTGA