ViewGene
Locus Name:
GeneID:
Location:

GeneID:1400
TrivialName: PA14_34550
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34550
PAO1 Ortholog Locus:PA2325
Sequence Length:1236
Protein Length:411
Start: 3072155
Stop: 3070920
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05713.1|AE004658_7 (AE004658) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 411/411 (100%), Positives = 411/411 (100%)
Sequence:
ATGAGCGCACTGGAAAAGAACGCCGCCGATCCCTATCGGCAACCGCTGCCACGGACCCCGGCCCGGCGCATC
GCCGACGACGCCGAAGCGATCCGCGTCGCCCGCGAACTGGCCGGGCTGTTCGCCGAGGAAGCCTCGCTGCGC
GACCGCCAGCGCCGGCTGCCGGTGGCCGAACTGGAAGCCTTCTCGCAGAGCGGCCTATGGGGCATCAGCGTA
CCGCGCGCCTACGGCGGCGCCGAGGTCGGCTACCGGACCCTGGCCGAAGTACTGAAGACCATCGCCGCGGTA
GACCCGTCCCTGGCGCAGTTGCCGCAGAACCACCTGGCGGTGCTCGACCATTTGCGCCTGGACGGCAGCGAG
GAGCAGAAACGCTTCTTCTACGGCCTGGTGCTAGACGGCGTGCGCTTCGGCAACGCCTTCTCCGAACGCCAC
AGCCGTACCGTCGCCGAATTCCAGACACGAGTGCTGGCGGATGGCGACGGGTTCCGCATCGACGGCCGCAAG
TTCTATTCGAGCGGCGCCCTGCTCGCCCACTGGGTACCGGCCGTCGGCCTCGACGCCGAGCAGCGCGCGCAC
CTGGCGTTCATCCCGCGCGACGCGCCGGGGCTGACGGTGATCGACGACTGGTCCGGCTTCGGCCAGCGCACC
ACCGCCAGCGGCACCGTCATCCTGGACAACGTGCGGGTGCCGGCCGAGCACGTCATCCCGGTGCACCGCGCC
TTCGACCGCCCCACCGCCGCCGGCGCCGTATCGCAGTTCATCCAGGCCGCCATCGACGCCGGCATCGCCCGT
GGCATCCTCGCCGAGACCGTGCAGCAGGTGCGCCGCCACGCGCGGCCATGGATAGACGCCAACCAGCAGCAT
GCCTGGGAAGACCCCTACACCATCCAGCAGGTCGGCGACCTGCGCATCCGCGTGCGCGCCGCGGAAGCCGTG
CTCGACCTGGCGGCCGACGCCATCGAAGCGGCGCTCGCCGCCCCCGACGAGGAGAGCGTGGCCGCCGCCTCG
ATCGCCGTGGCCGAGGCCAAGGTGCTCACCACCGAAGCCGCCCTGCTCGCCGCCAACCGGCTGTTCGAACTG
GCCGGCACGCGCTCGACCCTGGAGGAACTCAATCTCGACCGCCACTGGCGCAACGCCCGCACCCACACCCTG
CATGACCCGGTGCGCTGGAAATACCATGCCATCGGCAACTACCAGTTGAATGGGGTGAAGCCACCGCGGCAC
GCCTGGCTCTAG
Translation:
MSALEKNAADPYRQPLPRTPARRIADDAEAIRVARELAGLFAEEASLRDRQRRLPVAELEAFSQSGLWGISV
PRAYGGAEVGYRTLAEVLKTIAAVDPSLAQLPQNHLAVLDHLRLDGSEEQKRFFYGLVLDGVRFGNAFSERH
SRTVAEFQTRVLADGDGFRIDGRKFYSSGALLAHWVPAVGLDAEQRAHLAFIPRDAPGLTVIDDWSGFGQRT
TASGTVILDNVRVPAEHVIPVHRAFDRPTAAGAVSQFIQAAIDAGIARGILAETVQQVRRHARPWIDANQQH
AWEDPYTIQQVGDLRIRVRAAEAVLDLAADAIEAALAAPDEESVAAASIAVAEAKVLTTEAALLAANRLFEL
AGTRSTLEELNLDRHWRNARTHTLHDPVRWKYHAIGNYQLNGVKPPRHAWL*
AnnotationID:1409GeneID:1400
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 13:01:53
Gene Name:
Confidence Code:3
GeneProduct:putative flavin reductase dependent enzyme
Cell Localization:()
Synonyms:PA2325
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd01163
Secondary Functional Category(ies):central intermediary metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56477.1| (AE016866) acyl-CoA dehydrogenase family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 426

 Score =  485 bits (1248), Expect = e-136
 Identities = 244/404 (60%), Positives = 298/404 (73%), Gaps = 4/404 (0%)

>dbj|BAB51710.1| (AP003006) dibenzothiophene desulfurization enzyme [Mesorhizobium
           loti]
          Length = 415

 Score =  465 bits (1196), Expect = e-130
 Identities = 233/394 (59%), Positives = 287/394 (72%)

>gb|AAL46206.1| (AE008972) acyl-CoA dehydrogenase [Agrobacterium tumefaciens str.
           C58 (U. Washington)]
          Length = 415

 Score =  451 bits (1161), Expect = e-126
 Identities = 226/396 (57%), Positives = 283/396 (71%)








 
Structural Features:
cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C (DszC). 
CD-Length = 377 residues, 100.0% aligned
Score =  375 bits (964), Expect = 6e-105







   
Genomic Context:






   
Comment:


















    ReferenceID:2803




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19948




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32470




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1400_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1400
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2548
                           PA2325_tr
                           translation of PA2325
                           411
                           99.99
                           99.99
                           0
                           2102.0
     

     
     
80322
                           gb|AAG05713.1|AE004658_7
                           (AE004658) hypothetical protein PA2325 [Pseudomonas aeruginosa PAO1]
                           411
                           99.99
                           99.99
                           0
                           2102.0
     

     
     
80324
                           gb|AAN68363.1|AE016469_5
                           (AE016784) conserved hypothetical protein [Pseudomonas putida KT2440]
                           415
                           58.07
                           70.36
                           5
                           1213.0
     

     
     
80325
                           dbj|BAB51710.1|
                           (AP003006) dibenzothiophene desulfurization enzyme [Mesorhizobium loti]
                           415
                           56.86
                           71.08
                           4
                           1193.0
     

     
     
80323
                           gb|AAO56477.1|
                           (AE016866) acyl-CoA dehydrogenase family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           435
                           56.55
                           68.73
                           33
                           1246.0
     

     






      

          
GC ORFID: 44402How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2325Glimmer Score: 

          
Start: 1881761Stop: 1882996

          
Length: 1236


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2325 translation of PA2325Homolog Bit Score 814.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene7330 (ORF: BLASTX 481.0), t_PA2347 (ORF: BLASTX 456.0), t_PA2346 (ORF: BLASTX 426.0), psyr_15may02_Scaffold2_revised_gene3829 (ORF: BLASTX 412.0), t_PA2325 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGCACTGGAAAAGAACGCCGCCGATCCCTATCGGCAACCGCTGCCACGGACCCCGGCCCGGCGCATC 
GCCGACGACGCCGAAGCGATCCGCGTCGCCCGCGAACTGGCCGGGCTGTTCGCCGAGGAAGCCTCGCTGCGC 
GACCGCCAGCGCCGGCTGCCGGTGGCCGAACTGGAAGCCTTCTCGCAGAGCGGCCTATGGGGCATCAGCGTA 
CCGCGCGCCTACGGCGGCGCCGAGGTCGGCTACCGGACCCTGGCCGAAGTACTGAAGACCATCGCCGCGGTA 
GACCCGTCCCTGGCGCAGTTGCCGCAGAACCACCTGGCGGTGCTCGACCATTTGCGCCTGGACGGCAGCGAG 
GAGCAGAAACGCTTCTTCTACGGCCTGGTGCTAGACGGCGTGCGCTTCGGCAACGCCTTCTCCGAACGCCAC 
AGCCGTACCGTCGCCGAATTCCAGACACGAGTGCTGGCGGATGGCGACGGGTTCCGCATCGACGGCCGCAAG 
TTCTATTCGAGCGGCGCCCTGCTCGCCCACTGGGTACCGGCCGTCGGCCTCGACGCCGAGCAGCGCGCGCAC 
CTGGCGTTCATCCCGCGCGACGCGCCGGGGCTGACGGTGATCGACGACTGGTCCGGCTTCGGCCAGCGCACC 
ACCGCCAGCGGCACCGTCATCCTGGACAACGTGCGGGTGCCGGCCGAGCACGTCATCCCGGTGCACCGCGCC 
TTCGACCGCCCCACCGCCGCCGGCGCCGTATCGCAGTTCATCCAGGCCGCCATCGACGCCGGCATCGCCCGT 
GGCATCCTCGCCGAGACCGTGCAGCAGGTGCGCCGCCACGCGCGGCCATGGATAGACGCCAACCAGCAGCAT 
GCCTGGGAAGACCCCTACACCATCCAGCAGGTCGGCGACCTGCGCATCCGCGTGCGCGCCGCGGAAGCCGTG 
CTCGACCTGGCGGCCGACGCCATCGAAGCGGCGCTCGCCGCCCCCGACGAGGAGAGCGTGGCCGCCGCCTCG 
ATCGCCGTGGCCGAGGCCAAGGTGCTCACCACCGAAGCCGCCCTGCTCGCCGCCAACCGGCTGTTCGAACTG 
GCCGGCACGCGCTCGACCCTGGAGGAACTCAATCTCGACCGCCACTGGCGCAACGCCCGCACCCACACCCTG 
CATGACCCGGTGCGCTGGAAATACCATGCCATCGGCAACTACCAGTTGAATGGGGTGAAGCCACCGCGGCAC 
GCCTGGCTCTAG