ViewGene

Locus Name:
GeneID:
Location:

GeneID:140
TrivialName: PA14_38970
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38970
PAO1 Ortholog Locus:PA1976
Sequence Length:2646
Protein Length:881
Start: 3473829
Stop: 3471184
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05364.1|AE004624_3 (AE004624) probable two-component sensor [Pseudomonas aeruginosa PAO1]
Identities = 879/881 (99%), Positives = 880/881 (99%)
Sequence:
ATGGCATGCATATCAACCAGACCTTCACCGGGGTCGCCATTGGCCGACCCCGTGGAGGTGTCCGTCGCTGAG
CTGCAGGCGCGGGTCGTCGCCCTCGAAGAAGAGCGGCACAAGTTGCAGCGGATCAACCAGGCGCTGATCGGA
CGCATCGAGTCGAGCGCCGCGCAGAGCGACGAGGCCTACGGCGCCTTCCAGTATTCCGTGGTGCTGGCCGAG
CAGGTCCGCGAGCGCACCGACGCGCTGAGCCAGACGATGCTCGAACTGAAGGCCAGCAACCAGTTGCTCAGC
GACGCTCGCCTGCGTGCCGAGACCGCCCACCAGCATCTGCTCGACGCCATCGAAAGCATCTCCGACGCCTTC
GTCCTGTTCGATCCGCAGCAGCGCATCGTGCTGTTCAACGAGCGCTTCCGCGCGCTGTGGGTCGACAGCCGG
GCGCGGATCGGTCCTGGCATGCGCCGCGCCGAACTGCACCGGCTGGCGCGCAGCGGCGGGCTGATCGTCGAG
GAACAGCGCGGCGGCGACCAGCAGACCCTGTATCGCCTGCGCGACGAGCGCTGGCTGCGGATGAGCGAACGG
CCGACCCGCGACGGCGGGCTGGCGGTGCTCTACAGCGACGTCACCGAGATCAAGCTCAGCGAGACCGCGCGC
CGCGAGCAGGCGCTGGCGCAGAAGTCGCACCTGTTGCAGCGGGCGGTGGACAACCTCTCCCAGGGCGTGGCG
ATGGTCGGCGCCGACGGCGTGCTGGAGTTGTGGAACCGGCGCTTCCTGGAACTCTGCGGGCTGGCGCCGATC
GCCGGGCACCGGGCCTTCGCCGAAGTCATGGCGGAGAGCGAATTGCCGTTGCTCACGCCGCGCAGCCAGGAC
TCCCAGGGGAGTCCGCTGAGCGCCCGCGAGCAGCGCCTGTTCGATGGCCGGGTGCTGGAGATCCGTACCCAT
GCGCTGCCCACCGGCGGCTTCGTCAACACCTTCACCGACATCACCGAACGCTATCGCCACGCCGAGGCGTTG
CGCGCCAGCGAGCGCTGGATCCGCCTGATCACCGACCAGGTGCCGGCGCTGATCGCCTATCTCAGCGACGAA
CTGGTCTACGAATTCACCAACAAGGTCTACGAGGAGTGGTACCGCTGGCCCAGCGGCTCGATGCTCGGCCGC
TGCCTGCGCGACGTGCATGGCGCCGAGCACTGCCGGCGCCTGGAGCCGTACTTCGAGCGGGCCCTGGCCGGC
GAAAGCGTGACCTTCGAGATCGCCGAGACCGCGTTGTCCGGCGAGGAGCGCTACATGCAGCGCTCCTACGTG
CCGAACCGCCAGGCCGACGGCCGGGTCGCCGGGCTGTTCGTGCTGATTCGGGATATCACCGAGCGCCGGCGG
ACCGCCGAGGCGCTGCACCAGGCCTACCAGAACCTCGAACAGCGGGTGCGCGAGCGGACCGCCGAGCTGACC
ACCCTCAACGACCAGTTCAAGCGCGAGATCCACGAGCGCAGCCAGGTCGAGGCGCGCCTGCGCGAGGCCAAG
CGCGAGGCGGAACAGGCCAACCTGTCGAAGACCAAGTTCCTCGCGGCGGTCAGCCACGACCTGCTGCAACCG
CTGAACGCCGCGCGGCTGTTCACCAGCGCCTTGCAGGAGCGCGGCAGCGCGACGCGGGACAACGAGGCGCTG
GTGAACAACATCAGCCATTCGCTGGAGGACGTGGAGAACCTGCTCGGCACCCTGGTGGACATTTCCAAGCTG
GACGCCGGCGTGATCACCCCGGACATCGCCCCGTTCGAGCTTGGCGAACTGCTGGGCAACCTGGCCGCGGAG
TACCGCCAGGTAGCCGCCAGCGAAGGCCTGCGCCTGGACTTCGTGGCCTGCGGGGCGCTGGTCCGCAGCGAC
CAGCAACTGCTCGCGCGAATCCTCCGCAACCTGCTTTCCAACGCCATCCGCTATACCCCGCGAGGGCGCGTG
CTGCTGGGTTGCCGCCGGCATCGGCAGCGCCTGTCGATCGAGGTCTGGGACACCGGGGTGGGCATCGCCGCC
GACAAGCTCGGCGAGATTTTCCAGGAATTCAAGCGCGGCGAGTCACAGCGCTGTCACCAGGACCGCGGGCTC
GGCCTGGGATTGGCGATCGTCGACAAGATCGCCCGCATGCTCGGCCACCGGGTCCGGGTCGGCTCGCTGCCG
GGCAAGGGCTCATGCTTCGCCATCGAGGTACCGCTGGCCCGCCATGCCCCGCGCAGTCGCGCCGAGCCGCTG
GCCAGCGCGGACGACCTGCGCGAGCGCCTGCGTGGTTCGCGGGTGTGGGTGCTGGACAACGATGCGGCGATC
TGCGCCGGCATGCGCACGTTGCTCGAAGCCTGGGGCTGCCGGGTAGTGACGGCGCTGTCGGAGGAAGACCTG
GCGCGACAGGTCGACAACTACCATGCCGAGGCCGACCTGCTGATCGTCGACTATCACCTCGACGACCAGCGC
AACGGCGTCGACGCGGTTGCCGCGATCAACGCCCGGCGCGGCTCGCCGCTGCCGGCGCTGATGATCACCGCC
AACTACAGCAACGAGCTCAAGCAGCAGGTCCGCGAGCTTGGCCATACCCTGATGCACAAGCCGGTGCGGCCG
ATGAAGCTGAAGACCGCGCTCTGCCACTTGCTGGAGCGCGAAGCCTCGGTCTGA
Translation:
MACISTRPSPGSPLADPVEVSVAELQARVVALEEERHKLQRINQALIGRIESSAAQSDEAYGAFQYSVVLAE
QVRERTDALSQTMLELKASNQLLSDARLRAETAHQHLLDAIESISDAFVLFDPQQRIVLFNERFRALWVDSR
ARIGPGMRRAELHRLARSGGLIVEEQRGGDQQTLYRLRDERWLRMSERPTRDGGLAVLYSDVTEIKLSETAR
REQALAQKSHLLQRAVDNLSQGVAMVGADGVLELWNRRFLELCGLAPIAGHRAFAEVMAESELPLLTPRSQD
SQGSPLSAREQRLFDGRVLEIRTHALPTGGFVNTFTDITERYRHAEALRASERWIRLITDQVPALIAYLSDE
LVYEFTNKVYEEWYRWPSGSMLGRCLRDVHGAEHCRRLEPYFERALAGESVTFEIAETALSGEERYMQRSYV
PNRQADGRVAGLFVLIRDITERRRTAEALHQAYQNLEQRVRERTAELTTLNDQFKREIHERSQVEARLREAK
REAEQANLSKTKFLAAVSHDLLQPLNAARLFTSALQERGSATRDNEALVNNISHSLEDVENLLGTLVDISKL
DAGVITPDIAPFELGELLGNLAAEYRQVAASEGLRLDFVACGALVRSDQQLLARILRNLLSNAIRYTPRGRV
LLGCRRHRQRLSIEVWDTGVGIAADKLGEIFQEFKRGESQRCHQDRGLGLGLAIVDKIARMLGHRVRVGSLP
GKGSCFAIEVPLARHAPRSRAEPLASADDLRERLRGSRVWVLDNDAAICAGMRTLLEAWGCRVVTALSEEDL
ARQVDNYHAEADLLIVDYHLDDQRNGVDAVAAINARRGSPLPALMITANYSNELKQQVRELGHTLMHKPVRP
MKLKTALCHLLEREASV*
AnnotationID:150GeneID:140
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 16:04:59
Gene Name:
Confidence Code:3
GeneProduct:putative sensor histidine kinase protein
Cell Localization:()
Synonyms:PA1976
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0642
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN68272.1|AE016461_8 (AE016784) sensory box histidine kinase/response regulator
           [Pseudomonas putida KT2440]
          Length = 655

 Score =  782 bits (2019), Expect = 0.0
 Identities = 409/550 (74%), Positives = 459/550 (83%), Gaps = 4/550 (0%)

>dbj|BAC46464.1| (AP005939) two-component hybrid sensor and regulator [Bradyrhizobium
            japonicum USDA 110]
          Length = 1169

 Score =  322 bits (825), Expect = 7e-87
 Identities = 199/477 (41%), Positives = 281/477 (58%), Gaps = 31/477 (6%)

>gb|AAN55770.1|AE015713_3 (AE015713) sensor histidine kinase/response regulator [Shewanella
            oneidensis MR-1]
          Length = 1145

 Score =  315 bits (806), Expect = 1e-84
 Identities = 180/444 (40%), Positives = 258/444 (58%), Gaps = 20/444 (4%)
Structural Features:
COG0642, BaeS, Signal transduction histidine kinase 
[Signal transduction mechanisms]
CD-Length = 336 residues,  98.5% aligned
Score =  140 bits (352), Expect = 7e-34
Identities = 89/337 (26%), Positives = 137/337 (40%), Gaps = 8/337 (2%)
Genomic Context:
Comment:
ReferenceID:283
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17425
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32749
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:140_cdd.html
URL:
Homologs By Global Alignment
Gene ID:140

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
254 PA1976_tr translation of PA1976 881 99.77 99.88 0 4445.0
17567 gb|AAG05364.1|AE004624_3 (AE004624) probable two-component sensor [Pseudomonas aeruginosa PAO1] 881 99.77 99.88 0 4445.0
17568 gb|AAN68272.1|AE016461_8 (AE016784) sensory box histidine kinase/response regulator [Pseudomonas putida KT2440] 892 53.92 60.20 248 2244.0
17580 emb|CAC48564.1| (AL603642) putative sensor histidine kinase protein [Sinorhizobium meliloti] 916 30.34 45.85 204 993.0
17582 gb|AAM42618.1| (AE012453) sensor histidine kinase [Xanthomonas campestris pv. campestris str. ATCC 33913] 995 28.64 40.50 228 770.0
GC ORFID: 43142How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1976Glimmer Score:
Start: 1480082Stop: 1482727
Length: 2646
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1976 translation of PA1976Homolog Bit Score 1716.0
Other Homologs: t_PA1992 (ORF: BLASTX 322.0), t_PA1976 (ORF: GLIMMER)
GC ORF Sequence
ATGGCATGCATATCAACCAGACCTTCACCGGGGTCGCCATTGGCCGACCCCGTGGAGGTGTCCGTCGCTGAG
CTGCAGGCGCGGGTCGTCGCCCTCGAAGAAGAGCGGCACAAGTTGCAGCGGATCAACCAGGCGCTGATCGGA
CGCATCGAGTCGAGCGCCGCGCAGAGCGACGAGGCCTACGGCGCCTTCCAGTATTCCGTGGTGCTGGCCGAG
CAGGTCCGCGAGCGCACCGACGCGCTGAGCCAGACGATGCTCGAACTGAAGGCCAGCAACCAGTTGCTCAGC
GACGCTCGCCTGCGTGCCGAGACCGCCCACCAGCATCTGCTCGACGCCATCGAAAGCATCTCCGACGCCTTC
GTCCTGTTCGATCCGCAGCAGCGCATCGTGCTGTTCAACGAGCGCTTCCGCGCGCTGTGGGTCGACAGCCGG
GCGCGGATCGGTCCTGGCATGCGCCGCGCCGAACTGCACCGGCTGGCGCGCAGCGGCGGGCTGATCGTCGAG
GAACAGCGCGGCGGCGACCAGCAGACCCTGTATCGCCTGCGCGACGAGCGCTGGCTGCGGATGAGCGAACGG
CCGACCCGCGACGGCGGGCTGGCGGTGCTCTACAGCGACGTCACCGAGATCAAGCTCAGCGAGACCGCGCGC
CGCGAGCAGGCGCTGGCGCAGAAGTCGCACCTGTTGCAGCGGGCGGTGGACAACCTCTCCCAGGGCGTGGCG
ATGGTCGGCGCCGACGGCGTGCTGGAGTTGTGGAACCGGCGCTTCCTGGAACTCTGCGGGCTGGCGCCGATC
GCCGGGCACCGGGCCTTCGCCGAAGTCATGGCGGAGAGCGAATTGCCGTTGCTCACGCCGCGCAGCCAGGAC
TCCCAGGGGAGTCCGCTGAGCGCCCGCGAGCAGCGCCTGTTCGATGGCCGGGTGCTGGAGATCCGTACCCAT
GCGCTGCCCACCGGCGGCTTCGTCAACACCTTCACCGACATCACCGAACGCTATCGCCACGCCGAGGCGTTG
CGCGCCAGCGAGCGCTGGATCCGCCTGATCACCGACCAGGTGCCGGCGCTGATCGCCTATCTCAGCGACGAA
CTGGTCTACGAATTCACCAACAAGGTCTACGAGGAGTGGTACCGCTGGCCCAGCGGCTCGATGCTCGGCCGC
TGCCTGCGCGACGTGCATGGCGCCGAGCACTGCCGGCGCCTGGAGCCGTACTTCGAGCGGGCCCTGGCCGGC
GAAAGCGTGACCTTCGAGATCGCCGAGACCGCGTTGTCCGGCGAGGAGCGCTACATGCAGCGCTCCTACGTG
CCGAACCGCCAGGCCGACGGCCGGGTCGCCGGGCTGTTCGTGCTGATTCGGGATATCACCGAGCGCCGGCGG
ACCGCCGAGGCGCTGCACCAGGCCTACCAGAACCTCGAACAGCGGGTGCGCGAGCGGACCGCCGAGCTGACC
ACCCTCAACGACCAGTTCAAGCGCGAGATCCACGAGCGCAGCCAGGTCGAGGCGCGCCTGCGCGAGGCCAAG
CGCGAGGCGGAACAGGCCAACCTGTCGAAGACCAAGTTCCTCGCGGCGGTCAGCCACGACCTGCTGCAACCG
CTGAACGCCGCGCGGCTGTTCACCAGCGCCTTGCAGGAGCGCGGCAGCGCGACGCGGGACAACGAGGCGCTG
GTGAACAACATCAGCCATTCGCTGGAGGACGTGGAGAACCTGCTCGGCACCCTGGTGGACATTTCCAAGCTG
GACGCCGGCGTGATCACCCCGGACATCGCCCCGTTCGAGCTTGGCGAACTGCTGGGCAACCTGGCCGCGGAG
TACCGCCAGGTAGCCGCCAGCGAAGGCCTGCGCCTGGACTTCGTGGCCTGCGGGGCGCTGGTCCGCAGCGAC
CAGCAACTGCTCGCGCGAATCCTCCGCAACCTGCTTTCCAACGCCATCCGCTATACCCCGCGAGGGCGCGTG
CTGCTGGGTTGCCGCCGGCATCGGCAGCGCCTGTCGATCGAGGTCTGGGACACCGGGGTGGGCATCGCCGCC
GACAAGCTCGGCGAGATTTTCCAGGAATTCAAGCGCGGCGAGTCACAGCGCTGTCACCAGGACCGCGGGCTC
GGCCTGGGATTGGCGATCGTCGACAAGATCGCCCGCATGCTCGGCCACCGGGTCCGGGTCGGCTCGCTGCCG
GGCAAGGGCTCATGCTTCGCCATCGAGGTACCGCTGGCCCGCCATGCCCCGCGCAGTCGCGCCGAGCCGCTG
GCCAGCGCGGACGACCTGCGCGAGCGCCTGCGTGGTTCGCGGGTGTGGGTGCTGGACAACGATGCGGCGATC
TGCGCCGGCATGCGCACGTTGCTCGAAGCCTGGGGCTGCCGGGTAGTGACGGCGCTGTCGGAGGAAGACCTG
GCGCGACAGGTCGACAACTACCATGCCGAGGCCGACCTGCTGATCGTCGACTATCACCTCGACGACCAGCGC
AACGGCGTCGACGCGGTTGCCGCGATCAACGCCCGGCGCGGCTCGCCGCTGCCGGCGCTGATGATCACCGCC
AACTACAGCAACGAGCTCAAGCAGCAGGTCCGCGAGCTTGGCCATACCCTGATGCACAAGCCGGTGCGGCCG
ATGAAGCTGAAGACCGCGCTCTGCCACTTGCTGGAGCGCGAAGCCTCGGTCTGA