ViewGene
Locus Name:
GeneID:
Location:

GeneID:1399
TrivialName: PA14_53780
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53780
PAO1 Ortholog Locus:PA0811
Sequence Length:1248
Protein Length:415
Start: 4767825
Stop: 4769072
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04200.1|AE004516_5 (AE004516) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 413/415 (99%), Positives = 415/415 (100%)
Sequence:
GTGACCGCCGCCCTCGCCGCGAACCCGACCCAGCGCTACCGCTGGGTCATCCTGCTGATCGCCACCTTCGCC
CAGGCCTGCGCCTGCTTCTTCGTCCAGGGCATCGGCGCGATCGCCGTGTTCATCCAGAACGACCTGCAACTC
TCGTCGCTGCAGATCGGCCTGCTGGTGTCGGCGGCGCAGCTGGTGCCGATCGTCGGCCTGCTGGTGGCCGGC
GAGCTGCTCGACCGCTACTCCGAACGGCTGGTGGTCGGCCTCGGCACGCTGATCGTCGCGCTGGCCCTCTGC
GCCTCGCTGTGGGCCACCGACTACCTGACCATCCTGCTGTTCCTGGTGGTCGTCGGCGCCGGCTACAGCACG
GCGCAGCCGGGCGGCAGCAAGTCGGTGTCGCGCTGGTTCGCCAAGACCCAGCTGGGCTTCGCCATGGGCATC
CGCCAGGCCGGGCTGCCGCTGGGCGGCGCGCTGTCCGCCGCGCTGCTGCCGTACCTGGCGGGGATCTACGGC
TGGCGCAGCGCATTCCTCGCCGGCGGCCTGGTTGCGTTCCTCGGCGCGCTGGCCTTCATGCTCTTCTACCGC
ACCCCGCCGGACGCCCCCGCGCCCGGCGCGAACCCCGCCGAACGCGACCTGGGCGCGGTGGTGAAGTCGCGG
CTGGCGATGATCACCGACCCGGCGATGAAGAACATCGTCTGTTCCGGGGTGGCGCTGATCTCGGTGCAGTAC
GGCATCCTGGTGTTCACCGTACTCTACCTGCACGAGACCCTGGAGATCGGCATCGGCATGGCCGCGACCCTG
CTGTTCGTCGCCCAGGGCAGCGGCGTCGCCGGGCGCATCCTGCTGGCCGCCTGGAGCGACCGCTGCCGCGCC
GGGCGCTACTTCCCGGTGATGGTCTGCCTCGGCGCGGTGATCCTCGGCCTGCTGGCGCTGGTCCTGCTGCCC
CTGCAATCACCGTTGGGGATGGGCCTGGTAGTGGCCTGGCTGGGCTTCTTCGGCTTCGGCTGGTACGGTCCC
TGGGTGGCCTATGTGGCGGATACCGCGCCGGTCGGCAAGACCGGCTTCGCCCTCGGCCTGGCGATGGCCATC
AACCAGCTGGCGATCGTTCTCGCGCCGCCGGCGCTGGGGCTGCTCAAGGACTTCAGCCACAGCTTCGTCCCC
GGCTGGCTGGCACTCTGCCTGATGGCGGCGGTAGCCCTTGTGGTCACTGCCTGGAGCGGCCGCGGCCTGCCC
ACGGCGCTGCCACAGAAGCACTGA
Translation:
MTAALAANPTQRYRWVILLIATFAQACACFFVQGIGAIAVFIQNDLQLSSLQIGLLVSAAQLVPIVGLLVAG
ELLDRYSERLVVGLGTLIVALALCASLWATDYLTILLFLVVVGAGYSTAQPGGSKSVSRWFAKTQLGFAMGI
RQAGLPLGGALSAALLPYLAGIYGWRSAFLAGGLVAFLGALAFMLFYRTPPDAPAPGANPAERDLGAVVKSR
LAMITDPAMKNIVCSGVALISVQYGILVFTVLYLHETLEIGIGMAATLLFVAQGSGVAGRILLAAWSDRCRA
GRYFPVMVCLGAVILGLLALVLLPLQSPLGMGLVVAWLGFFGFGWYGPWVAYVADTAPVGKTGFALGLAMAI
NQLAIVLAPPALGLLKDFSHSFVPGWLALCLMAAVALVVTAWSGRGLPTALPQKH*
AnnotationID:1408GeneID:1399
AnnotatorUID: danlee
Modification Date/Time: 2004-04-20 16:04:24
Gene Name:
Confidence Code:3
GeneProduct:probable MFS transporter
Cell Localization:()
Synonyms:PA0811
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:KOG2504,COG2271, KOG2533
Secondary Functional Category(ies):Membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
KOG2504, Monocarboxylate transporter.  Score: 90.0, 1e-18
COG2271, UhpC, Sugar phosphate permease. Score: 87.6, 5e-18
KOG2533, Permease of the major facilitator superfamily. Score: 82.6, 1e-16






   
Genomic Context:






   
Comment:


















    ReferenceID:14343




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19946




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1399
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2547
                           PA0811_tr
                           translation of PA0811
                           415
                           99.51
                           99.99
                           0
                           2102.0
     

     
     
80321
                           gb|AAG04200.1|AE004516_5
                           (AE004516) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           415
                           99.27
                           99.99
                           0
                           2099.0
     

     






      

          
GC ORFID: 44401How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0811Glimmer Score: 

          
Start: 186082Stop: 184835

          
Length: 1248


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0811 translation of PA0811Homolog Bit Score 814.0

          
Other Homologs:  t_PA0811 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGACCGCCGCCCTCGCCGCGAACCCGACCCAGCGCTACCGCTGGGTCATCCTGCTGATCGCCACCTTCGCC 
CAGGCCTGCGCCTGCTTCTTCGTCCAGGGCATCGGCGCGATCGCCGTGTTCATCCAGAACGACCTGCAACTC 
TCGTCGCTGCAGATCGGCCTGCTGGTGTCGGCGGCGCAGCTGGTGCCGATCGTCGGCCTGCTGGTGGCCGGC 
GAGCTGCTCGACCGCTACTCCGAACGGCTGGTGGTCGGCCTCGGCACGCTGATCGTCGCGCTGGCCCTCTGC 
GCCTCGCTGTGGGCCACCGACTACCTGACCATCCTGCTGTTCCTGGTGGTCGTCGGCGCCGGCTACAGCACG 
GCGCAGCCGGGCGGCAGCAAGTCGGTGTCGCGCTGGTTCGCCAAGACCCAGCTGGGCTTCGCCATGGGCATC 
CGCCAGGCCGGGCTGCCGCTGGGCGGCGCGCTGTCCGCCGCGCTGCTGCCGTACCTGGCGGGGATCTACGGC 
TGGCGCAGCGCATTCCTCGCCGGCGGCCTGGTTGCGTTCCTCGGCGCGCTGGCCTTCATGCTCTTCTACCGC 
ACCCCGCCGGACGCCCCCGCGCCCGGCGCGAACCCCGCCGAACGCGACCTGGGCGCGGTGGTGAAGTCGCGG 
CTGGCGATGATCACCGACCCGGCGATGAAGAACATCGTCTGTTCCGGGGTGGCGCTGATCTCGGTGCAGTAC 
GGCATCCTGGTGTTCACCGTACTCTACCTGCACGAGACCCTGGAGATCGGCATCGGCATGGCCGCGACCCTG 
CTGTTCGTCGCCCAGGGCAGCGGCGTCGCCGGGCGCATCCTGCTGGCCGCCTGGAGCGACCGCTGCCGCGCC 
GGGCGCTACTTCCCGGTGATGGTCTGCCTCGGCGCGGTGATCCTCGGCCTGCTGGCGCTGGTCCTGCTGCCC 
CTGCAATCACCGTTGGGGATGGGCCTGGTAGTGGCCTGGCTGGGCTTCTTCGGCTTCGGCTGGTACGGTCCC 
TGGGTGGCCTATGTGGCGGATACCGCGCCGGTCGGCAAGACCGGCTTCGCCCTCGGCCTGGCGATGGCCATC 
AACCAGCTGGCGATCGTTCTCGCGCCGCCGGCGCTGGGGCTGCTCAAGGACTTCAGCCACAGCTTCGTCCCC 
GGCTGGCTGGCACTCTGCCTGATGGCGGCGGTAGCCCTTGTGGTCACTGCCTGGAGCGGCCGCGGCCTGCCC 
ACGGCGCTGCCACAGAAGCACTGA