ViewGene

Locus Name:
GeneID:
Location:

GeneID:1395
TrivialName: PA14_41480
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_41480
PAO1 Ortholog Locus:PA1786
Sequence Length:1209
Protein Length:402
Start: 3699817
Stop: 3701025
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05175.1|AE004604_5 (AE004604) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 400/402 (99%), Positives = 401/402 (99%)
Sequence:
ATGACAGACAGAGCGATACGCAGCCAGGCCTGGGCCGGCGGTTCCGACGCACCGGAAAAGAGCGCCCTGGAC
ATCGGTTTCATGGCGCTGACCGATTCGGCCTCGCTGATCGTGGCCGCCACCCAGGGCTTCGCCCAGCCCTAC
GGCCTCACGCTCAATCTCAGgcGCCAACCGTCCTGGGCCACCTTGCGCGACAAGCTGCTCAGCGGCGAGCTG
GATGCCGCGCAGTGCCTGTACgggCTGGTCTACGGCGTCCAGCTCGGCCTCGGCGGCAGCGCGGCAAGCGAG
ATGGCGGTGCTCATGGGACTGTGCCAGAACGGCCAGGCGATCAATCTTTCCGAACCGCTGAAGCAGGCTGGC
GTGACCAGTGCGGAGGCACTGCTCCGGCATCGGCGCCAGAATGGTGCACGCCTGACCCTGGCGCAGACCTTT
CCCACCGGTACCCACGCGCTCTGGCTGAACTACTGGCTGGCGAGCATCGGTCTGCATCCGCTGCACGACGTG
CACAGCGTGGTGGTTCCACCGGCGCAGATGGTCGGCCATCTCCAGGCCGGGCGCATCGACGGGTTCTGCGCC
GGCGGTCCCTGGGGCGCCCTGgcCgtggACCAGGGCCAGGGCTTCACCATCGCCACCAGCCAGGCGATCTGG
CCGGACCACCCGGAAAAGGTCCTCGGCACTACCCGCgCCTTCGTCGACGCCTACCCGAACACCGCCCGCGCG
CTGGTCATGGCGGTCCTCGACGCCAGCCGCTTCATCGAACAGAACGCCGAGAACCGCCTGGGCACCGCGCAA
CTGATCAGCGGCCGCGACTATGTCGACGCTCCGCTCGGCGCGATCCAGCCGCGCTTCTTCGGCCGCTACCAG
GACGGCCTCGGCAACGCCTGGCAGGACCCGCATCCGCTGCGTTTCTACGCCGACGGCGAAGTCAACCGGCCC
TGGCTCTCGGATGGCATGTGGTTCATGACCCAGTTCCGCCGCTGGGGCCTGCTGCGCGAAGACCCGGACTAC
CTGGGCATCGCCCGCAGGGTCCAGCAGACCGCGCTGTACCGCGATGCCGCGACGGCCCTTGGCCTGCGCCTG
GACGGCGCCGACATGCGCCGCTCGACGCTGATCGACGGGCGCACCTGGGACGGCAGCGACCCCGCCGGCTAC
GCCCGCAGCTTCCCGATCCACGCCCTGGCCGAAACCGGCCAGGGCATCGACCTCTGA
Translation:
MTDRAIRSQAWAGGSDAPEKSALDIGFMALTDSASLIVAATQGFAQPYGLTLNLRRQPSWATLRDKLLSGEL
DAAQCLYGLVYGVQLGLGGSAASEMAVLMGLCQNGQAINLSEPLKQAGVTSAEALLRHRRQNGARLTLAQTF
PTGTHALWLNYWLASIGLHPLHDVHSVVVPPAQMVGHLQAGRIDGFCAGGPWGALAVDQGQGFTIATSQAIW
PDHPEKVLGTTRAFVDAYPNTARALVMAVLDASRFIEQNAENRLGTAQLISGRDYVDAPLGAIQPRFFGRYQ
DGLGNAWQDPHPLRFYADGEVNRPWLSDGMWFMTQFRRWGLLREDPDYLGIARRVQQTALYRDAATALGLRL
DGADMRRSTLIDGRTWDGSDPAGYARSFPIHALAETGQGIDL*
AnnotationID:1404GeneID:1395
AnnotatorUID: diggins
Modification Date/Time: 2005-05-11 07:07:11
Gene Name:nasS
Confidence Code:2
GeneProduct:nitrate-binding protein NasS
Cell Localization:()
Synonyms:nasF
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0715
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN67708.1|AE016401_11 (AE016781) nitrate-binding protein NasS, putative [Pseudomonas
           putida KT2440]
          Length = 404

 Score =  561 bits (1445), Expect = e-159
 Identities = 272/386 (70%), Positives = 309/386 (80%)

>emb|CAD13909.1| (AL646058) PUTATIVE NITRATE TRANSPORTER PROTEIN [Ralstonia
           solanacearum]
          Length = 420

 Score =  441 bits (1133), Expect = e-123
 Identities = 214/392 (54%), Positives = 272/392 (69%), Gaps = 1/392 (0%)

>gb|AAB86900.1| (L27431) nitrate transporter component; NasF [Klebsiella oxytoca]
          Length = 418

 Score =  408 bits (1049), Expect = e-113
 Identities = 199/387 (51%), Positives = 270/387 (69%), Gaps = 3/387 (0%)
Structural Features:
COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, 
periplasmic components 
[Inorganic ion transport and metabolism]
CD-Length = 335 residues,  94.3% aligned
Score =  185 bits (471), Expect = 7e-48
Identities = 90/329 (27%), Positives = 135/329 (41%), Gaps = 17/329 (5%)
Genomic Context:
Comment:
ReferenceID:2793
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19938
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37141
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1395_cdd.html
URL:
ReferenceID:38134
Author/Investigator(s): Gutierrez JC, Ramos F, Ortner L, Tortolero M.
Title: nasST, two genes involved in the induction of the assimilatory nitrite-nitrate reductase operon (nasAB) of Azotobacter vinelandii.
PubMed: 8748040
MedLine:
Source:
Mol Microbiol. 1995 Nov;18(3):579-91.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=96342386&dopt=Abstract
ReferenceID:38135
Author/Investigator(s): Wu Q, Stewart V.
Title: NasFED proteins mediate assimilatory nitrate and nitrite transport in Klebsiella oxytoca (pneumoniae) M5al.
PubMed: 9495773
MedLine:
Source:
J Bacteriol. 1998 Mar;180(5):1311-22.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=9495773
Homologs By Global Alignment
Gene ID:1395

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2543 PA1786_tr translation of PA1786 402 99.50 99.75 0 2106.0
80207 gb|AAG05175.1|AE004604_5 (AE004604) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 402 99.50 99.75 0 2106.0
80208 gb|AAN67708.1|AE016401_11 (AE016781) nitrate-binding protein NasS, putative [Pseudomonas putida KT2440] 409 67.23 76.28 12 1431.0
80209 gb|AAO55821.1| (AE016864) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 403 66.74 77.91 1 1440.0
80210 emb|CAA58581.1| (X83602) NASS [Azotobacter vinelandii] 408 62.00 72.30 22 1229.0
GC ORFID: 44397How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1786Glimmer Score:
Start: 1254092Stop: 1252884
Length: 1209
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1786 translation of PA1786Homolog Bit Score 815.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene362 (ORF: BLASTX 561.0), t_PA1786 (ORF: GLIMMER)
GC ORF Sequence
ATGACAGACAGAGCGATACGCAGCCAGGCCTGGGCCGGCGGTTCCGACGCACCGGAAAAGAGCGCCCTGGAC
ATCGGTTTCATGGCGCTGACCGATTCGGCCTCGCTGATCGTGGCCGCCACCCAGGGCTTCGCCCAGCCCTAC
GGCCTCACGCTCAATCTCAGgcGCCAACCGTCCTGGGCCACCTTGCGCGACAAGCTGCTCAGCGGCGAGCTG
GATGCCGCGCAGTGCCTGTACgggCTGGTCTACGGCGTCCAGCTCGGCCTCGGCGGCAGCGCGGCAAGCGAG
ATGGCGGTGCTCATGGGACTGTGCCAGAACGGCCAGGCGATCAATCTTTCCGAACCGCTGAAGCAGGCTGGC
GTGACCAGTGCGGAGGCACTGCTCCGGCATCGGCGCCAGAATGGTGCACGCCTGACCCTGGCGCAGACCTTT
CCCACCGGTACCCACGCGCTCTGGCTGAACTACTGGCTGGCGAGCATCGGTCTGCATCCGCTGCACGACGTG
CACAGCGTGGTGGTTCCACCGGCGCAGATGGTCGGCCATCTCCAGGCCGGGCGCATCGACGGGTTCTGCGCC
GGCGGTCCCTGGGGCGCCCTGgcCgtggACCAGGGCCAGGGCTTCACCATCGCCACCAGCCAGGCGATCTGG
CCGGACCACCCGGAAAAGGTCCTCGGCACTACCCGCgCCTTCGTCGACGCCTACCCGAACACCGCCCGCGCG
CTGGTCATGGCGGTCCTCGACGCCAGCCGCTTCATCGAACAGAACGCCGAGAACCGCCTGGGCACCGCGCAA
CTGATCAGCGGCCGCGACTATGTCGACGCTCCGCTCGGCGCGATCCAGCCGCGCTTCTTCGGCCGCTACCAG
GACGGCCTCGGCAACGCCTGGCAGGACCCGCATCCGCTGCGTTTCTACGCCGACGGCGAAGTCAACCGGCCC
TGGCTCTCGGATGGCATGTGGTTCATGACCCAGTTCCGCCGCTGGGGCCTGCTGCGCGAAGACCCGGACTAC
CTGGGCATCGCCCGCAGGGTCCAGCAGACCGCGCTGTACCGCGATGCCGCGACGGCCCTTGGCCTGCGCCTG
GACGGCGCCGACATGCGCCGCTCGACGCTGATCGACGGGCGCACCTGGGACGGCAGCGACCCCGCCGGCTAC
GCCCGCAGCTTCCCGATCCACGCCCTGGCCGAAACCGGCCAGGGCATCGACCTCTGA