ViewGene
Locus Name:
GeneID:
Location:

GeneID:1394
TrivialName: PA14_53250
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53250
PAO1 Ortholog Locus:PA0852
Sequence Length:1170
Protein Length:389
Start: 4719782
Stop: 4720951
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04241.1|AE004520_4 (AE004520) chitin-binding protein CbpD precursor [Pseudomonas aeruginosa PAO1]
Identities = 388/389 (99%), Positives = 388/389 (99%)
Sequence:
ATGAAACACTACTCAGCCACCCTGGCACTCCTGCCACTCACCCTCGCCCTGTTCCTGCCCCAGGCAGCCCAT
GCCCACGGCTCGATGGAAACGCCGCCCAGCCGGGTCTACGGCTGCTTCCTCGAAGGTCCGGAGAATCCCAAG
TCGGCCGCCTGCAAGGCCGCCGTCGCCGCCGGCGGCACCCAGGCGCTGTACGACTGGAATGGCGTCAACCAG
GGCAACGCCAACGGCAACCACCAGGCGGTGGTCCCCGACGGCCAGCTCTGCGGCGCCGGCAAGGCACTGTTC
AAGGGCCTGAACCTGGCTCGCAGCGACTGGCCGAGCACCGCCATCGCCCCGGACGCCAGCGGCAACTTCCAG
TTCGTCTACAAGGCCAGCGCGCCGCACGCGACCCGCTACTTCGACTTCTACATCACCAAGGACGGCTACAAC
CCCGAGAAGCCGCTGGCCTGGAGCGACCTGGAACCCGCGCCGTTCTGCTCGATCACCAGCGTCAAGCTGGAG
AACGGCACCTACCGGATGAACTGCCCGCTGCCCCAGGGCAAGACCGGCAAGCATGTGATCTACAACGTCTGG
CAGCGTTCGGACAGCCCGGAAGCCTTCTACGCCTGCATCGACGTGAGCTTCAGCGGCGCCGTCGCCAACCCC
TGGCAAGCGCTGGGCAACCTGCGCGCGCAGCAGGACCTGCCGGCCGGTGCCACCGTCACCCTGCGCCTGTTC
GATGCCCAGGGCCGCGACGCCCAGCGTCACAGCCTGACCCTGGCCCAGGGCAACAACGGTGCCAAGCAATGG
CCGCTGGCGCTGGCGCAGAAGGTCAACCAGGACTCCACCCTGGTCAACATCGGCGTGCTGGATGCCTACGGG
GCGGTCAGCCCGGTGGCCAGCTCGCAGGACAACCAGGTCTACGTGCGCCAGGCCGGCTACCGCTTCCAGGTC
GACATTGAACTGCCGGTCGAGGGCGGCGGCGAGCAACCGGGCGGCGACGGCAAGGTCGACTTCGACTATCCG
CAAGGCCTGCAGCAATACGACGCCGGGACCGTAGTGCGCGGTGCCGATGGCAAGCGCTACCAGTGCAAGCCC
TACCCGAACTCCGGCTGGTGCAAGGGCTGGGACCTCTACTACGCCCCGGGCAAGGGCATGGCCTGGCAGGAC
GCCTGGACCCTGCTGTAA
Translation:
MKHYSATLALLPLTLALFLPQAAHAHGSMETPPSRVYGCFLEGPENPKSAACKAAVAAGGTQALYDWNGVNQ
GNANGNHQAVVPDGQLCGAGKALFKGLNLARSDWPSTAIAPDASGNFQFVYKASAPHATRYFDFYITKDGYN
PEKPLAWSDLEPAPFCSITSVKLENGTYRMNCPLPQGKTGKHVIYNVWQRSDSPEAFYACIDVSFSGAVANP
WQALGNLRAQQDLPAGATVTLRLFDAQGRDAQRHSLTLAQGNNGAKQWPLALAQKVNQDSTLVNIGVLDAYG
AVSPVASSQDNQVYVRQAGYRFQVDIELPVEGGGEQPGGDGKVDFDYPQGLQQYDAGTVVRGADGKRYQCKP
YPNSGWCKGWDLYYAPGKGMAWQDAWTLL*
AnnotationID:1403GeneID:1394
AnnotatorUID: danlee
Modification Date/Time: 2004-04-30 17:05:11
Gene Name:cpbD
Confidence Code:1
GeneProduct: chitin-binding protein CbpD precursor
Cell Localization:()
Synonyms:PA0852
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(23) Secreted Factors (toxins, enzymes, alginate)
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3397, pfam03067
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3397, Uncharacterized protein conserved in bacteria. Score: 322, 1e-88
pfam03067, Chitin_bind_3, Chitin binding domain. Score: 200, 4e-52






   
Genomic Context:






   
Comment:


















    ReferenceID:2791




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:16984




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI Conserved Domain Search.






    
Reference Type:Blast (text/plain)







    
Data:PA0852_CDS.cgi


    		




 
URL:

















    ReferenceID:19936




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1394
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2542
                           PA0852_tr
                           translation of PA0852
                           389
                           99.74
                           99.74
                           0
                           2104.0
     

     
     
80197
                           gb|AAG04241.1|AE004520_4
                           (AE004520) chitin-binding protein CbpD precursor [Pseudomonas aeruginosa PAO1]
                           389
                           99.74
                           99.74
                           0
                           2104.0
     

     
     
80198
                           gb|AAF12807.1|AF196565_1
                           (AF196565) CbpD precursor [Pseudomonas aeruginosa]
                           389
                           99.48
                           99.74
                           0
                           2100.0
     

     
     
80199
                           gb|AAQ58230.1|
                           (AE016911) probable carbohydrate-binding protein [Chromobacterium violaceum ATCC 12472]
                           411
                           46.95
                           61.07
                           52
                           912.0
     

     
     
80200
                           gb|AAQ60262.1|
                           (AE016919) carbohydrate-binding protein [Chromobacterium violaceum ATCC 12472]
                           418
                           42.82
                           58.37
                           61
                           880.0
     

     






      

          
GC ORFID: 44396How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0852Glimmer Score: 

          
Start: 234125Stop: 232956

          
Length: 1170


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0852 translation of PA0852Homolog Bit Score 815.0

          
Other Homologs:  t_PA0852 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACACTACTCAGCCACCCTGGCACTCCTGCCACTCACCCTCGCCCTGTTCCTGCCCCAGGCAGCCCAT 
GCCCACGGCTCGATGGAAACGCCGCCCAGCCGGGTCTACGGCTGCTTCCTCGAAGGTCCGGAGAATCCCAAG 
TCGGCCGCCTGCAAGGCCGCCGTCGCCGCCGGCGGCACCCAGGCGCTGTACGACTGGAATGGCGTCAACCAG 
GGCAACGCCAACGGCAACCACCAGGCGGTGGTCCCCGACGGCCAGCTCTGCGGCGCCGGCAAGGCACTGTTC 
AAGGGCCTGAACCTGGCTCGCAGCGACTGGCCGAGCACCGCCATCGCCCCGGACGCCAGCGGCAACTTCCAG 
TTCGTCTACAAGGCCAGCGCGCCGCACGCGACCCGCTACTTCGACTTCTACATCACCAAGGACGGCTACAAC 
CCCGAGAAGCCGCTGGCCTGGAGCGACCTGGAACCCGCGCCGTTCTGCTCGATCACCAGCGTCAAGCTGGAG 
AACGGCACCTACCGGATGAACTGCCCGCTGCCCCAGGGCAAGACCGGCAAGCATGTGATCTACAACGTCTGG 
CAGCGTTCGGACAGCCCGGAAGCCTTCTACGCCTGCATCGACGTGAGCTTCAGCGGCGCCGTCGCCAACCCC 
TGGCAAGCGCTGGGCAACCTGCGCGCGCAGCAGGACCTGCCGGCCGGTGCCACCGTCACCCTGCGCCTGTTC 
GATGCCCAGGGCCGCGACGCCCAGCGTCACAGCCTGACCCTGGCCCAGGGCAACAACGGTGCCAAGCAATGG 
CCGCTGGCGCTGGCGCAGAAGGTCAACCAGGACTCCACCCTGGTCAACATCGGCGTGCTGGATGCCTACGGG 
GCGGTCAGCCCGGTGGCCAGCTCGCAGGACAACCAGGTCTACGTGCGCCAGGCCGGCTACCGCTTCCAGGTC 
GACATTGAACTGCCGGTCGAGGGCGGCGGCGAGCAACCGGGCGGCGACGGCAAGGTCGACTTCGACTATCCG 
CAAGGCCTGCAGCAATACGACGCCGGGACCGTAGTGCGCGGTGCCGATGGCAAGCGCTACCAGTGCAAGCCC 
TACCCGAACTCCGGCTGGTGCAAGGGCTGGGACCTCTACTACGCCCCGGGCAAGGGCATGGCCTGGCAGGAC 
GCCTGGACCCTGCTGTAA