ViewGene
Locus Name:
GeneID:
Location:

GeneID:1392
TrivialName: PA14_11290
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11290
PAO1 Ortholog Locus:PA4065
Sequence Length:1266
Protein Length:421
Start: 983818
Stop: 982553
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07452.1|AE004822_12 (AE004822) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 417/421 (99%), Positives = 418/421 (99%)
Sequence:
ATGTATCTCTTCCGACTGGCACTGGCCAGCCTGGCCAACCGCCGCTTCACCGCCCTGCTGACGATCTTCGCC
ATCGCCCTCTCCGCCTGCCTGCTGCTGGCGGTGGAGCGGGTCCGCACCGAGGCCAAGGCCAGCTTCGCCAGT
ACCATCTCCGGAACCGACCTGATCATCGGCGCGCGCTCCGGCTCGGTGAACCTGCTGCTCTACTCGGTATTC
CGCATCGGCAACGCGACCAACAACATCCGCTGGGACAGCTACCGGCACTTCGCCGAAAACCCGCGGGTGAAG
TGGGCGATCCCGATCTCCCTCGGCGACTCGCACCGCGGCTACCGGGTAATGGGTACCGATGCCGGCTATTTC
GAGCACTACCGCTACGGCCGCGGCCAGGAACTGCAACTGGCCGAGGGCCGCGCCTTCGGCCAGGACCTGTTC
GACGTGGTGCTCGGCGCCGAGGTGGCCGCAGCCCTGCACTACAGGCTCGGCGAGAAGATCGTGCTGGCCCAT
GGGGTGAGCACGGTGAGCCTGGTCAAGCACGACGACAAGCCGTTCACCGTGGTCGGCATCCTCCAGCGCACC
GGTACCCCGGTGGACCGCACCCTGCACATATCCCTCGCCGGCATGGAGGCGCTGCACGTCGACTGGCGCAAC
GGGGTGCCGGCGATGGGCGCCGGGCGCGTCAGTGCCGAGCAGGCGCGGCACATGGACCTGCAACCACAGGCG
ATCACCGCGTTCCTGGTCGGCCTGAAGAGCAAGGTGGCGACCTTCGCCCTGCAACGCGAGGTCAACGACTAT
CCCGGCGAACCGCTGATGGCGATCCTCCCCGGTGTCGCCCTGCAGGAACTGTGGGGCCTGATGGGCACCGCC
GAGAAGGCACTGTTTGTGGTCTCGCTGTTCGTCGTCCTCACCGGCCTGATCGGCATGCTCACGGCGATCCTC
ACCAGCCTCAACGAGCGCCGCCGGGAGATGGCCATCCTGCGCTCGGTGGGCGCGCGCCCCTGGCACATCTTC
GGCCTGCTGCTGGCCGAGGCCTTCAGCCTGGCGCTGGCCGGCGTCGCCCTCGGCCTCTGCCTGCTCTACCTC
GGCATCGCCGCCAGCCAGGGCTACGTCCAGGCCAACTACGGCATCTACCTGCCGCTGGCCTGGCCGAGCGAC
TATGAGTGGAGCCTGCTCGGGGCTATCCTGGCGGCCGCCGTGCTGATCGGCTGCGTGCCGGCCTGGCGCGCC
TACCGCCAGTCCCTGGCCGATGGCCTGTCGATCCGCCTATGA
Translation:
MYLFRLALASLANRRFTALLTIFAIALSACLLLAVERVRTEAKASFASTISGTDLIIGARSGSVNLLLYSVF
RIGNATNNIRWDSYRHFAENPRVKWAIPISLGDSHRGYRVMGTDAGYFEHYRYGRGQELQLAEGRAFGQDLF
DVVLGAEVAAALHYRLGEKIVLAHGVSTVSLVKHDDKPFTVVGILQRTGTPVDRTLHISLAGMEALHVDWRN
GVPAMGAGRVSAEQARHMDLQPQAITAFLVGLKSKVATFALQREVNDYPGEPLMAILPGVALQELWGLMGTA
EKALFVVSLFVVLTGLIGMLTAILTSLNERRREMAILRSVGARPWHIFGLLLAEAFSLALAGVALGLCLLYL
GIAASQGYVQANYGIYLPLAWPSDYEWSLLGAILAAAVLIGCVPAWRAYRQSLADGLSIRL*
AnnotationID:1401GeneID:1392
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 06:06:14
Gene Name:
Confidence Code:3
GeneProduct:putative permease
Cell Localization:()
Synonyms:PA4065
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam02687,COG0577,COG4591
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66134.1|AE016242_2 (AE016775) ABC efflux transporter, permease protein, putative
           [Pseudomonas putida KT2440]
          Length = 421

 Score =  687 bits (1773), Expect = 0.0
 Identities = 342/421 (81%), Positives = 379/421 (90%)

>gb|AAO54223.1| (AE016858) permease, putative [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 421

 Score =  664 bits (1712), Expect = 0.0
 Identities = 329/421 (78%), Positives = 372/421 (88%)

>gb|AAO09229.1|AE016799_127 (AE016799) ABC-type antimicrobial peptide transport system,
           permease component [Vibrio vulnificus CMCP6]
          Length = 419

 Score =  467 bits (1202), Expect = e-131
 Identities = 235/416 (56%), Positives = 308/416 (74%), Gaps = 3/416 (0%)








 
Structural Features:
pfam02687, FtsX, Predicted permease. 
CD-Length = 172 residues, 100.0% aligned
Score = 91.2 bits (226), Expect = 2e-19
Identities = 48/173 (27%), Positives = 80/173 (46%), Gaps = 1/173 (0%)

COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component 
[Defense mechanisms]
CD-Length = 419 residues,  99.0% aligned
Score = 72.1 bits (175), Expect = 1e-13
Identities = 80/424 (18%), Positives = 153/424 (36%), Gaps = 28/424 (6%)

COG4591, LolE, ABC-type transport system, involved in lipoprotein release, 
permease component 
[Cell envelope biogenesis, outer membrane]
CD-Length = 408 residues,  98.8% aligned
Score = 66.4 bits (162), Expect = 6e-12
Identities = 87/441 (19%), Positives = 161/441 (36%), Gaps = 61/441 (13%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2787




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19932




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36816




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1392_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1392
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2540
                           PA4065_tr
                           translation of PA4065
                           421
                           99.04
                           99.28
                           0
                           2108.0
     

     
     
80156
                           gb|AAG07452.1|AE004822_12
                           (AE004822) hypothetical protein PA4065 [Pseudomonas aeruginosa PAO1]
                           421
                           99.04
                           99.28
                           0
                           2108.0
     

     
     
80157
                           gb|AAN66134.1|AE016242_2
                           (AE016775) ABC efflux transporter, permease protein, putative [Pseudomonas putida KT2440]
                           421
                           81.23
                           90.02
                           0
                           1773.0
     

     
     
80158
                           gb|AAO54223.1|
                           (AE016858) permease, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           421
                           78.14
                           88.36
                           0
                           1712.0
     

     
     
80159
                           gb|AAF95695.1|
                           (AE004324) conserved hypothetical protein [Vibrio cholerae O1 biovar eltor str. N16961]
                           424
                           59.19
                           76.41
                           6
                           1301.0
     

     






      

          
GC ORFID: 44394How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4065Glimmer Score: 

          
Start: 3970119Stop: 3971384

          
Length: 1266


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4065 translation of PA4065Homolog Bit Score 816.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1333 (ORF: BLASTX 664.0), t_PA4065 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTATCTCTTCCGACTGGCACTGGCCAGCCTGGCCAACCGCCGCTTCACCGCCCTGCTGACGATCTTCGCC 
ATCGCCCTCTCCGCCTGCCTGCTGCTGGCGGTGGAGCGGGTCCGCACCGAGGCCAAGGCCAGCTTCGCCAGT 
ACCATCTCCGGAACCGACCTGATCATCGGCGCGCGCTCCGGCTCGGTGAACCTGCTGCTCTACTCGGTATTC 
CGCATCGGCAACGCGACCAACAACATCCGCTGGGACAGCTACCGGCACTTCGCCGAAAACCCGCGGGTGAAG 
TGGGCGATCCCGATCTCCCTCGGCGACTCGCACCGCGGCTACCGGGTAATGGGTACCGATGCCGGCTATTTC 
GAGCACTACCGCTACGGCCGCGGCCAGGAACTGCAACTGGCCGAGGGCCGCGCCTTCGGCCAGGACCTGTTC 
GACGTGGTGCTCGGCGCCGAGGTGGCCGCAGCCCTGCACTACAGGCTCGGCGAGAAGATCGTGCTGGCCCAT 
GGGGTGAGCACGGTGAGCCTGGTCAAGCACGACGACAAGCCGTTCACCGTGGTCGGCATCCTCCAGCGCACC 
GGTACCCCGGTGGACCGCACCCTGCACATATCCCTCGCCGGCATGGAGGCGCTGCACGTCGACTGGCGCAAC 
GGGGTGCCGGCGATGGGCGCCGGGCGCGTCAGTGCCGAGCAGGCGCGGCACATGGACCTGCAACCACAGGCG 
ATCACCGCGTTCCTGGTCGGCCTGAAGAGCAAGGTGGCGACCTTCGCCCTGCAACGCGAGGTCAACGACTAT 
CCCGGCGAACCGCTGATGGCGATCCTCCCCGGTGTCGCCCTGCAGGAACTGTGGGGCCTGATGGGCACCGCC 
GAGAAGGCACTGTTTGTGGTCTCGCTGTTCGTCGTCCTCACCGGCCTGATCGGCATGCTCACGGCGATCCTC 
ACCAGCCTCAACGAGCGCCGCCGGGAGATGGCCATCCTGCGCTCGGTGGGCGCGCGCCCCTGGCACATCTTC 
GGCCTGCTGCTGGCCGAGGCCTTCAGCCTGGCGCTGGCCGGCGTCGCCCTCGGCCTCTGCCTGCTCTACCTC 
GGCATCGCCGCCAGCCAGGGCTACGTCCAGGCCAACTACGGCATCTACCTGCCGCTGGCCTGGCCGAGCGAC 
TATGAGTGGAGCCTGCTCGGGGCTATCCTGGCGGCCGCCGTGCTGATCGGCTGCGTGCCGGCCTGGCGCGCC 
TACCGCCAGTCCCTGGCCGATGGCCTGTCGATCCGCCTATGA