ViewGene
Locus Name:
GeneID:
Location:

GeneID:1391
TrivialName: PA14_16130
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16130
PAO1 Ortholog Locus:PA3733
Sequence Length:1230
Protein Length:409
Start: 1374294
Stop: 1373065
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07120.1|AE004792_5 (AE004792) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 406/409 (99%), Positives = 407/409 (99%)
Sequence:
ATGCGCACACTGCAGCCTGACGGACACCGCATGGAACATTCGCCCAAACCGCTGGCCGGCCTGAAGGTGGTC
GAGCTCGGCACCCTGATCGCCGGCCCTTTCGCCTCGCGGATCTGCGCCGAGTTCGGCGCCGAAGTGATCAAG
ATCGAGTCGCCCGACGGCGGCGACCCACTGCGCAAGTGGCGCAAGCTCTACGAAGGCACCTCGCTGTGGTGG
TTCGTTCAGGCACGCAACAAGAAATCCCTGACCCTCAATCTCAAGCACGCCGAGGGCCAGGCGATCCTGAAA
CGCCTGCTCGGCGATGCCGACATCCTGATCGAGAACTTCCGCCCCGGCGTACTGGAAAAGCTCGGCCTGGGC
TGGGATGTCCTCCACGCGCTGAACCCGCGCCTGGTGATGGTGCGCCTGTCGGGCTTCGGCCAGACCGGCCCC
TACAAGGACCAGCCGGGCTTCGGCGCGGTCGGCGAGTCGATGGGCGGACTGCGCTACATTACCGGCTTCGAG
GACCGCCCGCCGGTTCGCACCGGGATTTCCATCGGCGACTCGATCGCCGCCCTGTGGGGCGTGATCGGCGCG
CTGATGGCGCTGCGACACCGCGAGGTCAACGGCGGAGAGGGTCAGATGGTCGACGTCGCCCTCTACGAGGCG
ATCTTCGCCATGATGGAAAGCATGGTTCCGGAATTCGACGTGTTCGGTTTCATCCGCGAGCGCACCGGCAAC
ATCATGCCGGGCATCACCCCCTCCTCCATCCACACCAGCGCCGATGGCCGCCACGTACAGATCGGCGCCAAC
GGCGACGCGATCTTCCGCCGCTTCATGCAGGCCATCGGCCGCGACGACCTGGCCAGCGACCCGCGACTGGCC
AGCAACGACGGGCGCGATGCGCGCCGCGACGAACTCTATGGGGTTATCGACCGCTGGGTCGCCTCGCAGCCC
CTGGAGGAAGTGCTGGCGGTGCTGGCGCGAGCCGAAGTCCCGGCCAGCCGCATCTACTCCGCCGAAGACATG
TTCCGCGATCCGCAATTCCTTGCCCGCGAGATGTTCCTCTCGGCACGCTTGCCGGACGGCAAGCCGTTCCGT
ATGCCTGGCATCGTGCCCAAGCTGTCCGCCACGCCAGGCTCGGCGGATTGGGTAGGCCCGGAACTGGGCGAG
CATACCGATGCCCTGCTCGCCGACCTGGGCTACGACAGCGAGCGCATCGCCACCCTGCGCCGGGAAGGCGCC
ATCTGA
Translation:
MRTLQPDGHRMEHSPKPLAGLKVVELGTLIAGPFASRICAEFGAEVIKIESPDGGDPLRKWRKLYEGTSLWW
FVQARNKKSLTLNLKHAEGQAILKRLLGDADILIENFRPGVLEKLGLGWDVLHALNPRLVMVRLSGFGQTGP
YKDQPGFGAVGESMGGLRYITGFEDRPPVRTGISIGDSIAALWGVIGALMALRHREVNGGEGQMVDVALYEA
IFAMMESMVPEFDVFGFIRERTGNIMPGITPSSIHTSADGRHVQIGANGDAIFRRFMQAIGRDDLASDPRLA
SNDGRDARRDELYGVIDRWVASQPLEEVLAVLARAEVPASRIYSAEDMFRDPQFLAREMFLSARLPDGKPFR
MPGIVPKLSATPGSADWVGPELGEHTDALLADLGYDSERIATLRREGAI*
AnnotationID:1400GeneID:1391
AnnotatorUID: diggins
Modification Date/Time: 2005-06-15 07:07:27
Gene Name:
Confidence Code:3
GeneProduct:putative carnitine dehydratase
Cell Localization:()
Synonyms:PA3733
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:putative CAIB/BAIF family protein
Functional Category Confidence Code:5
COGs:COG1804,KOG3957
Secondary Functional Category(ies):fatty acid and phospholipid metabolism
EC Number:4.2.1.89
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67097.1|AE016338_7 (AE016779) CAIB/BAIF family protein [Pseudomonas putida KT2440]
          Length = 399

 Score =  714 bits (1843), Expect = 0.0
 Identities = 349/399 (87%), Positives = 371/399 (92%)

>gb|AAO36586.1| (AE015943) putative bile acid-inducible operon protein F
           [Clostridium tetani E88]
          Length = 417

 Score =  255 bits (651), Expect = 4e-67
 Identities = 142/397 (35%), Positives = 225/397 (56%), Gaps = 6/397 (1%)







 
Structural Features:
COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase 
[Energy production and conversion]
CD-Length = 396 residues, 100.0% aligned
Score =  413 bits (1062), Expect = 5e-116
Identities = 167/399 (41%), Positives = 236/399 (59%), Gaps = 3/399 (0%)

KOG3957, Predicted L-carnitine dehydratase/alpha-methylacyl-CoA racemase 
[Lipid transport and metabolism]
CD-Length = 387 residues,  97.9% aligned
Score =  193 bits (492), Expect = 6e-50
Identities = 110/398 (27%), Positives = 183/398 (45%), Gaps = 23/398 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2785




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19930




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31822




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1391_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1391
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2539
                           PA3733_tr
                           translation of PA3733
                           409
                           99.26
                           99.51
                           0
                           2108.0
     

     
     
80139
                           gb|AAG07120.1|AE004792_5
                           (AE004792) hypothetical protein PA3733 [Pseudomonas aeruginosa PAO1]
                           409
                           99.26
                           99.51
                           0
                           2108.0
     

     
     
80140
                           gb|AAN67097.1|AE016338_7
                           (AE016779) CAIB/BAIF family protein [Pseudomonas putida KT2440]
                           409
                           85.33
                           90.70
                           10
                           1843.0
     

     
     
80141
                           emb|CAE31939.1|
                           (BX640441) conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           430
                           56.97
                           69.53
                           35
                           1284.0
     

     
     
80142
                           emb|CAE36526.1|
                           (BX640426) conserved hypothetical protein [Bordetella parapertussis]
                           430
                           56.74
                           69.30
                           35
                           1280.0
     

     






      

          
GC ORFID: 44393How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3733Glimmer Score: 

          
Start: 3579643Stop: 3580872

          
Length: 1230


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3733 translation of PA3733Homolog Bit Score 816.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1753 (ORF: BLASTX 469.0), t_PA3733 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCACACTGCAGCCTGACGGACACCGCATGGAACATTCGCCCAAACCGCTGGCCGGCCTGAAGGTGGTC 
GAGCTCGGCACCCTGATCGCCGGCCCTTTCGCCTCGCGGATCTGCGCCGAGTTCGGCGCCGAAGTGATCAAG 
ATCGAGTCGCCCGACGGCGGCGACCCACTGCGCAAGTGGCGCAAGCTCTACGAAGGCACCTCGCTGTGGTGG 
TTCGTTCAGGCACGCAACAAGAAATCCCTGACCCTCAATCTCAAGCACGCCGAGGGCCAGGCGATCCTGAAA 
CGCCTGCTCGGCGATGCCGACATCCTGATCGAGAACTTCCGCCCCGGCGTACTGGAAAAGCTCGGCCTGGGC 
TGGGATGTCCTCCACGCGCTGAACCCGCGCCTGGTGATGGTGCGCCTGTCGGGCTTCGGCCAGACCGGCCCC 
TACAAGGACCAGCCGGGCTTCGGCGCGGTCGGCGAGTCGATGGGCGGACTGCGCTACATTACCGGCTTCGAG 
GACCGCCCGCCGGTTCGCACCGGGATTTCCATCGGCGACTCGATCGCCGCCCTGTGGGGCGTGATCGGCGCG 
CTGATGGCGCTGCGACACCGCGAGGTCAACGGCGGAGAGGGTCAGATGGTCGACGTCGCCCTCTACGAGGCG 
ATCTTCGCCATGATGGAAAGCATGGTTCCGGAATTCGACGTGTTCGGTTTCATCCGCGAGCGCACCGGCAAC 
ATCATGCCGGGCATCACCCCCTCCTCCATCCACACCAGCGCCGATGGCCGCCACGTACAGATCGGCGCCAAC 
GGCGACGCGATCTTCCGCCGCTTCATGCAGGCCATCGGCCGCGACGACCTGGCCAGCGACCCGCGACTGGCC 
AGCAACGACGGGCGCGATGCGCGCCGCGACGAACTCTATGGGGTTATCGACCGCTGGGTCGCCTCGCAGCCC 
CTGGAGGAAGTGCTGGCGGTGCTGGCGCGAGCCGAAGTCCCGGCCAGCCGCATCTACTCCGCCGAAGACATG 
TTCCGCGATCCGCAATTCCTTGCCCGCGAGATGTTCCTCTCGGCACGCTTGCCGGACGGCAAGCCGTTCCGT 
ATGCCTGGCATCGTGCCCAAGCTGTCCGCCACGCCAGGCTCGGCGGATTGGGTAGGCCCGGAACTGGGCGAG 
CATACCGATGCCCTGCTCGCCGACCTGGGCTACGACAGCGAGCGCATCGCCACCCTGCGCCGGGAAGGCGCC 
ATCTGA