ViewGene
Locus Name:
GeneID:
Location:

GeneID:1390
TrivialName: PA14_17030
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17030
PAO1 Ortholog Locus:PA3659
Sequence Length:1209
Protein Length:402
Start: 1459175
Stop: 1457967
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07047.1|AE004785_11 (AE004785) probable aminotransferase [Pseudomonas aeruginosa PAO1]
Identities = 401/402 (99%), Positives = 402/402 (100%)
Sequence:
ATGAATACCGCACTCGACAACCTCCAGCCCTACCCCTTCGAGAAGCTCCGCGCCCTGCTCGGCGGCGCCCGG
CCGCCCGCGACGCTGAAGCCGATCGCACTGTCCATCGGCGAGCCCAAGCACCGCTCGCCGAGCTTCGTCGCC
GAAACCCTGGCGGAGAACCTGGACCAGCTCGCGGTCTACCCGACCACCCTCGGCCTGCCGGCCCTGCGCGAA
GCCATCGCGCGCTGGTGCGAGCGGCGCTTCTCGGTACCGGCCGGCTGGCTGGATGCGGCGCGCCACGTACTG
CCGGTGAACGGTACCCGCGAGGCGCTGTTCGCCTTCACCCAGACCGTGGTCCGCCGCAGCGAGCCCGGCGAG
GCGCCCGGCCTGGTGGTCAGCCCGAACCCTTTCTACCAGATCTACGAAGGCGCGGCGCTGCTCGCCGGAGCC
GTGCCGCACTACCTGCCCTGCCGCGAGGAAAACGGCTTCAACCCCGATTTCGACGCGATCGACGAGGCGACC
TGGCAGCGCTGCCAGATTCTCTTCCTCTGCTCGCCGGGCAACCCCACCGGGGCCCTGGTACCGCTGGAGACC
CTGAAGAAGCTGATCGCCCTGGCCGACCGCTACGACTTCGTGATCGCCGCCGACGAGTGCTACAGCGAACTC
TACTTCGACGAAAACGCCCCGCCGCCCGGCCTGCTCAACGCTTGCGCCGAGCTGGGCCGCACGGACTTCAGC
CGCTGCGTGGTGTTCCACAGCCTGTCCAAGCGCTCCAACCTGCCCGGCCTGCGCTCGGGCTTCGTCGCCGGC
GACGCGGAGATCCTGAAGAAATTCCTCCTCTACCGCACCTACCACGGCTGCGCCATGCCGGTGCAGACCCAG
TTGGCGAGCATCGCCGCCTGGAACGACGAGGTCCATGTGCGCGCCAACCGCAGCCTCTACCGCGAGAAATTC
GACGCCGTGCTGGCGATCCTCGACGGCGTGCTCGACGTACAGCGCCCGGACGGCAGTTTCTACCTGTGGGCA
CGCACCCCGGTGGACGACACCGTATTCACCCGCGAACTGTTCGAGCAGCAGCACGTGACGGTGGTGCCGGGT
TCCTACCTGTCGCGCGAGGTGGACGGCGAGAACCCCGGCGCCAACCGCGTGCGCATGGCCCTGGTGGCACCA
CTGGCCGAGTGCGTCGAAGCCGCCGAGCGCATCCGCGACTACCTGCGGGCGCGCTGA
Translation:
MNTALDNLQPYPFEKLRALLGGARPPATLKPIALSIGEPKHRSPSFVAETLAENLDQLAVYPTTLGLPALRE
AIARWCERRFSVPAGWLDAARHVLPVNGTREALFAFTQTVVRRSEPGEAPGLVVSPNPFYQIYEGAALLAGA
VPHYLPCREENGFNPDFDAIDEATWQRCQILFLCSPGNPTGALVPLETLKKLIALADRYDFVIAADECYSEL
YFDENAPPPGLLNACAELGRTDFSRCVVFHSLSKRSNLPGLRSGFVAGDAEILKKFLLYRTYHGCAMPVQTQ
LASIAAWNDEVHVRANRSLYREKFDAVLAILDGVLDVQRPDGSFYLWARTPVDDTVFTRELFEQQHVTVVPG
SYLSREVDGENPGANRVRMALVAPLAECVEAAERIRDYLRAR*
AnnotationID:1399GeneID:1390
AnnotatorUID: diggins
Modification Date/Time: 2005-04-21 09:09:55
Gene Name:
Confidence Code:3
GeneProduct:succinyldiaminopimelate transaminase
Cell Localization:()
Synonyms:dapC
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0436,KOG0257
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67209.1|AE016348_1 (AE016779) aminotransferase, class I [Pseudomonas putida KT2440]
          Length = 398

 Score =  666 bits (1719), Expect = 0.0
 Identities = 323/402 (80%), Positives = 353/402 (87%), Gaps = 4/402 (0%)

>emb|CAE37296.1| (BX640429) N-succinyl-L,L-diaminopimelate aminotransferase
           [Bordetella parapertussis]
          Length = 404

 Score =  448 bits (1152), Expect = e-125
 Identities = 233/401 (58%), Positives = 282/401 (70%), Gaps = 7/401 (1%)








 
Structural Features:
COG0436, Aspartate/tyrosine/aromatic aminotransferase 
[Amino acid transport and metabolism]
CD-Length = 393 residues,  99.0% aligned
Score =  285 bits (731), Expect = 1e-77
Identities = 134/409 (32%), Positives = 191/409 (46%), Gaps = 31/409 (7%)

KOG0257, Kynurenine aminotransferase, glutamine transaminase K 
[Amino acid transport and metabolism]
CD-Length = 420 residues,  96.2% aligned
Score =  142 bits (360), Expect = 1e-34
Identities = 102/432 (23%), Positives = 167/432 (38%), Gaps = 67/432 (15%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2783




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19928




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31884




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1390_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1390
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2538
                           PA3659_tr
                           translation of PA3659
                           402
                           99.75
                           99.99
                           0
                           2109.0
     

     
     
80123
                           gb|AAG07047.1|AE004785_11
                           (AE004785) probable aminotransferase [Pseudomonas aeruginosa PAO1]
                           402
                           99.75
                           99.99
                           0
                           2109.0
     

     
     
80124
                           gb|AAN67209.1|AE016348_1
                           (AE016779) aminotransferase, class I [Pseudomonas putida KT2440]
                           402
                           80.34
                           87.81
                           4
                           1722.0
     

     
     
80125
                           gb|AAO55051.1|
                           (AE016861) aminotransferase, classes I and II [Pseudomonas syringae pv. tomato str. DC3000]
                           402
                           79.35
                           85.07
                           5
                           1689.0
     

     
     
80126
                           gb|AAR02166.1|
                           (AY342395) aminotransferase [Pseudomonas syringae pv. syringae]
                           404
                           76.48
                           85.64
                           6
                           1667.0
     

     






      

          
GC ORFID: 44392How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3659Glimmer Score: 

          
Start: 3494762Stop: 3495970

          
Length: 1209


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3659 translation of PA3659Homolog Bit Score 816.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4799 (ORF: BLASTX 651.0), t_PA3659 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATACCGCACTCGACAACCTCCAGCCCTACCCCTTCGAGAAGCTCCGCGCCCTGCTCGGCGGCGCCCGG 
CCGCCCGCGACGCTGAAGCCGATCGCACTGTCCATCGGCGAGCCCAAGCACCGCTCGCCGAGCTTCGTCGCC 
GAAACCCTGGCGGAGAACCTGGACCAGCTCGCGGTCTACCCGACCACCCTCGGCCTGCCGGCCCTGCGCGAA 
GCCATCGCGCGCTGGTGCGAGCGGCGCTTCTCGGTACCGGCCGGCTGGCTGGATGCGGCGCGCCACGTACTG 
CCGGTGAACGGTACCCGCGAGGCGCTGTTCGCCTTCACCCAGACCGTGGTCCGCCGCAGCGAGCCCGGCGAG 
GCGCCCGGCCTGGTGGTCAGCCCGAACCCTTTCTACCAGATCTACGAAGGCGCGGCGCTGCTCGCCGGAGCC 
GTGCCGCACTACCTGCCCTGCCGCGAGGAAAACGGCTTCAACCCCGATTTCGACGCGATCGACGAGGCGACC 
TGGCAGCGCTGCCAGATTCTCTTCCTCTGCTCGCCGGGCAACCCCACCGGGGCCCTGGTACCGCTGGAGACC 
CTGAAGAAGCTGATCGCCCTGGCCGACCGCTACGACTTCGTGATCGCCGCCGACGAGTGCTACAGCGAACTC 
TACTTCGACGAAAACGCCCCGCCGCCCGGCCTGCTCAACGCTTGCGCCGAGCTGGGCCGCACGGACTTCAGC 
CGCTGCGTGGTGTTCCACAGCCTGTCCAAGCGCTCCAACCTGCCCGGCCTGCGCTCGGGCTTCGTCGCCGGC 
GACGCGGAGATCCTGAAGAAATTCCTCCTCTACCGCACCTACCACGGCTGCGCCATGCCGGTGCAGACCCAG 
TTGGCGAGCATCGCCGCCTGGAACGACGAGGTCCATGTGCGCGCCAACCGCAGCCTCTACCGCGAGAAATTC 
GACGCCGTGCTGGCGATCCTCGACGGCGTGCTCGACGTACAGCGCCCGGACGGCAGTTTCTACCTGTGGGCA 
CGCACCCCGGTGGACGACACCGTATTCACCCGCGAACTGTTCGAGCAGCAGCACGTGACGGTGGTGCCGGGT 
TCCTACCTGTCGCGCGAGGTGGACGGCGAGAACCCCGGCGCCAACCGCGTGCGCATGGCCCTGGTGGCACCA 
CTGGCCGAGTGCGTCGAAGCCGCCGAGCGCATCCGCGACTACCTGCGGGCGCGCTGA