ViewGene

Locus Name:
GeneID:
Location:

GeneID:139
TrivialName: PA14_50980
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50980
PAO1 Ortholog Locus:PA1032
Sequence Length:2544
Protein Length:847
Start: 4527711
Stop: 4530254
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04421.1|AE004535_8 (AE004535) probable penicillin amidase [Pseudomonas aeruginosa PAO1]
Identities = 845/847 (99%), Positives = 846/847 (99%)
Sequence:
ATGGCCTCGCCAGCCTTCATGCGTTTTCTTCCCCGTTGCGGCGCCGCCGCGGCCTTCGGCACCCTCCTGGGC
CTGGCCGGTTGCCAGTCCTGGCTCGACGATCGCTACGCCGACAGCCTGCCGCCGACCTCCGGCGTGCAACCG
ATCAAGGGCCTGGCGCAAAACGTATCGATCCGGCGCAACGCGCTGGGCATGCCACTGATCGAAACCGGCACC
TTCCATGACGCGTTGTTCGCCCTGGGCTACGTACACGCCTCCGACCGCCTGAGCCAGATGGTCAGCCTGCGC
CTGCTGGCCCAGGGACGGCTGGCCGAGATGGTCGGCCCCGGCGCGCTGGAGATCGACCGTTTCATGCGTACC
GTGAACCTGCGCCAGGCCGCGGAGATCCAGTACAGGAACGCCTCGCCGCGCCTGCAACGCTTCTTCGAGGTC
TACGCGCGCGGGGTCAACGCCTACCTGTATCGCTATCGCGACAAGCTGCCGATGGACCTGGCCCAGTCCGGC
TACCGTCCGGAATACTGGAAGCCCGAGGACTCGGCCCTGGTCTTCGCCCTGCTCAACTTCGGCCTGGCGGTG
AACCTACAGGAAGAAATCGCCTCGCTGACGCTCGCGCAGAAGGTCGGCAGCGACAAGCTGGCCTGGCTAACG
CCGACCTATCCCGACGAAAACCTGCCGTTCGACGAGGCGGAAAAGCTCAAGGGCCTGCGCCTGGACGGGCAG
GTTCCCGGCCTCGCGGGCGTCGAGGGCGCGGCGCGGCAGGTCGCAGCGCTGAGCATGCTCGGGGTTGCCGCC
TCGAACAACTGGGCTATCGCGCCACAACGCAGCCGCAGCGGCAAGAGCCTGATGGCCAACGACACCCATCTG
CCACTGAGCATGCCGTCGGTGTGGAACTACGTACAGATCCGCTCGCCCAAGTACCAGGCCGCGGGCGTTTCC
ATCGCCGGTCTGCCGGGCGTGGTGGCGGGCTTCAACGGCAAGCTGGCCTGGGGCATGACCATGGTCCTGGGC
GACAACCAGGATCTCTACCTGGAACAGTTGCGACGCCAGGGCAACCGGCTCTATTACCTGGCCGACGGCAAG
TGGCAGCCAACCCGCGAACGCCAGGAAACCTTCTTCATCAAGGGCCAGCGGCCGATCCGCGAGGTCATCCAC
GAAACCCGCCATGGCCCGCTGCTCAACAGCGCCCTGGGCGAACGCAAGAACATCCTCCAGCCGCTGCCGCTG
AAGAGCGGCTACGGACTGGCCTACCGGAGCATCCAGCAGGAAGCCGACAAGACCCTGGACGGCTTCTTCGAC
CTGTCGCGGGCCAAGACCATCGAGCAGGCCTTCGACGCCACCCGCGAGATTCGCGCGATGCCGCTGAACATC
GTGTTCGCCGACGAAAAGCACATCGGCTGGCAGGTCACCGGACGCTATCCGAACCGCAAGGAGGGTCGCGGC
CTGCTGCCCTCCCCTGGCTGGGACGGCCGCTACGACTGGGATGGCTATGCCGACCCGATCCTCCACCCCTCC
GACCAGGACCCGCAGCAGGGCTGGCTGGGTACCGCCAACCACCGCACCGTGCAACCCGGCTACGGCGCTCAG
TTGTCCAACTCCTGGTACTACCCGGAGCGCGCCGAGCGCATCGCCCAGCTCGCCGGTGCCAGCAAGAGCCAC
GACACCCAGAGCATGATCCGCATGCAGTACGACCAGACCTCGCTGTTCGTCGCCAAGCTGCAAGCCATGTTC
GACAATCCCGGCATGGCGGCGCCGCTGCGCCAGGCCATCGACGCCTTGCCGGAGGCGCAACGCAGCCGGGCG
CGGGAGGCCTACGACCGGCTGATGGCGTTCGACGGCAAGCTGACAGCCAGCTCCAGCGACGCCGCGCTGTAC
GGCGCCTTCCTCCACGAGAGCGCCAGGCAGATATTCCTCGACGAGCTAGGACCGGAGGACGGCCCTGCCTGG
AAAGCCTTCGTCGAGACCGCCAACCTCTCCTACTCGGCGCAAGCCGACCACCTGCTCGGGCGCGACGACAGT
CCGTTCTGGGACGATACCCGCACTCCGCAGAAGGAGGACAAGCCGGCAATCCTCGCGCGCAGCCTCGCCGCC
GCCGTGGAGTTCTGCGAACAGCGACTGGGGAGCGAGCGCAAGGCCTGGCAATGGGGCAAGCTGCACACCTAC
GAATGGCGGAGCGACAGCTCGAAAATGGCCCCCTACCTGGGCGCCGGCGAGCGCGCCGGACTCGGCGCGATC
AAGGGCTATCTCGATCGCGGGCCCTATCCGGCCGGCGGCGACCACACCACGCTGGACGTATCGGCCTACGGC
TGGGGCCAGGACTTCGACACTTGGCTGATCCCGGCGATGCGGCTAATCGTCGACTTCGGCCAGAGCGAACCG
ATGATCGGCGTGAACAGCAGCGGCCAATCCGGCAATCCGGCCAGCCCGCACTACGCCGACGGTATCGACGCC
TGGCTCAAGGGGCGCTACGTTAGCTTCCCGTTCCAGCCACAGAACCTCGATCGCGTTTACGGCAACAAGCGG
CTGACGCTCACTCCCGCTCGCTGA
Translation:
MASPAFMRFLPRCGAAAAFGTLLGLAGCQSWLDDRYADSLPPTSGVQPIKGLAQNVSIRRNALGMPLIETGT
FHDALFALGYVHASDRLSQMVSLRLLAQGRLAEMVGPGALEIDRFMRTVNLRQAAEIQYRNASPRLQRFFEV
YARGVNAYLYRYRDKLPMDLAQSGYRPEYWKPEDSALVFALLNFGLAVNLQEEIASLTLAQKVGSDKLAWLT
PTYPDENLPFDEAEKLKGLRLDGQVPGLAGVEGAARQVAALSMLGVAASNNWAIAPQRSRSGKSLMANDTHL
PLSMPSVWNYVQIRSPKYQAAGVSIAGLPGVVAGFNGKLAWGMTMVLGDNQDLYLEQLRRQGNRLYYLADGK
WQPTRERQETFFIKGQRPIREVIHETRHGPLLNSALGERKNILQPLPLKSGYGLAYRSIQQEADKTLDGFFD
LSRAKTIEQAFDATREIRAMPLNIVFADEKHIGWQVTGRYPNRKEGRGLLPSPGWDGRYDWDGYADPILHPS
DQDPQQGWLGTANHRTVQPGYGAQLSNSWYYPERAERIAQLAGASKSHDTQSMIRMQYDQTSLFVAKLQAMF
DNPGMAAPLRQAIDALPEAQRSRAREAYDRLMAFDGKLTASSSDAALYGAFLHESARQIFLDELGPEDGPAW
KAFVETANLSYSAQADHLLGRDDSPFWDDTRTPQKEDKPAILARSLAAAVEFCEQRLGSERKAWQWGKLHTY
EWRSDSSKMAPYLGAGERAGLGAIKGYLDRGPYPAGGDHTTLDVSAYGWGQDFDTWLIPAMRLIVDFGQSEP
MIGVNSSGQSGNPASPHYADGIDAWLKGRYVSFPFQPQNLDRVYGNKRLTLTPAR*
AnnotationID:149GeneID:139
AnnotatorUID: diggins
Modification Date/Time: 2006-01-20 06:06:33
Gene Name:pac
Confidence Code:2
GeneProduct:putative penicillin amidase
Cell Localization:(8) Periplasmic
Synonyms:PA1032
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(3) Antibiotic resistance and susceptibility
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd01936, pfam01804
Secondary Functional Category(ies):Putative enzyme
EC Number:3.5.1.11
Status:ACTIVE
Pathway:
Homology:
>gb|AAO57589.1| (AE016870) penicillin amidase family protein 
[Pseudomonas syringae pv. tomato str. DC3000]
Length = 824

 Score = 1086 bits (2808), Expect = 0.0
 Identities = 535/847 (63%), Positives = 657/847 (77%), Gaps = 23/847 (2%)

>gb|AAN66733.1|AE016301_4 (AE016778) acylase, penicillin amidase family 
[Pseudomonas putida KT2440]
Length = 813

 Score = 1039 bits (2687), Expect = 0.0
 Identities = 518/847 (61%), Positives = 635/847 (74%), Gaps = 34/847 (4%)
Structural Features:
cd01936, CA_beta, Cephalosporin acylase (CA)
CD-Length = 517 residues, 100.0% aligned
Score =  382 bits (983), Expect = 8e-107

pfam01804, Penicil_amidase
CD-Length = 734 residues, 100.0% aligned
Score =  615 bits (1587), Expect = 7e-177
Genomic Context:
Comment:
ReferenceID:281
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17423
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:38250
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:139_cdd.html
URL:
ReferenceID:38251
Author/Investigator(s): Schumacher G, Sizmann D, Haug H, Buckel P, Bock A.
Title: Penicillin acylase from E. coli: unique gene-protein relation.
PubMed: 3016663
MedLine:
Source:
Nucleic Acids Res. 1986 Jul 25;14(14):5713-27.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.gov/articlerender.fcgi?tool=pubmed&pubmedid=3016663
ReferenceID:38252
Author/Investigator(s): Barbero JL, Buesa JM, Gonzalez de Buitrago G, Mendez E, Pez-Aranda A, Garcia JL.
Title: Complete nucleotide sequence of the penicillin acylase gene from Kluyvera citrophila.
PubMed: 3032748
MedLine:
Source:
Gene. 1986;49(1):69-80.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=3032748&query_hl=7&itool=pubmed_DocSum
ReferenceID:38253
Author/Investigator(s): Martin L, Prieto MA, Cortes E, Garcia JL.
Title: Cloning and sequencing of the pac gene encoding the penicillin G acylase of Bacillus megaterium ATCC 14945.
PubMed: 7875576
MedLine:
Source:
FEMS Microbiol Lett. 1995 Jan 15;125(2-3):287-92.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7875576&query_hl=7&itool=pubmed_DocSum
Homologs By Global Alignment
Gene ID:139

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
253 PA1032_tr translation of PA1032 847 99.76 99.88 0 4454.0
17564 gb|AAG04421.1|AE004535_8 (AE004535) probable penicillin amidase [Pseudomonas aeruginosa PAO1] 847 99.76 99.88 0 4454.0
17565 gb|AAO57589.1| (AE016870) penicillin amidase family protein [Pseudomonas syringae pv. tomato str. DC3000] 847 63.16 77.56 23 2827.0
17566 gb|AAN66733.1|AE016301_4 (AE016778) acylase, penicillin amidase family [Pseudomonas putida KT2440] 849 61.13 74.79 38 2714.0
GC ORFID: 43141How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1032Glimmer Score:
Start: 426197Stop: 423654
Length: 2544
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1032 translation of PA1032Homolog Bit Score 1720.0
Other Homologs: psyr_15may02_Scaffold5_revised_gene6095 (ORF: BLASTX 1092.0), t_PA1032 (ORF: GLIMMER)
GC ORF Sequence
ATGGCCTCGCCAGCCTTCATGCGTTTTCTTCCCCGTTGCGGCGCCGCCGCGGCCTTCGGCACCCTCCTGGGC
CTGGCCGGTTGCCAGTCCTGGCTCGACGATCGCTACGCCGACAGCCTGCCGCCGACCTCCGGCGTGCAACCG
ATCAAGGGCCTGGCGCAAAACGTATCGATCCGGCGCAACGCGCTGGGCATGCCACTGATCGAAACCGGCACC
TTCCATGACGCGTTGTTCGCCCTGGGCTACGTACACGCCTCCGACCGCCTGAGCCAGATGGTCAGCCTGCGC
CTGCTGGCCCAGGGACGGCTGGCCGAGATGGTCGGCCCCGGCGCGCTGGAGATCGACCGTTTCATGCGTACC
GTGAACCTGCGCCAGGCCGCGGAGATCCAGTACAGGAACGCCTCGCCGCGCCTGCAACGCTTCTTCGAGGTC
TACGCGCGCGGGGTCAACGCCTACCTGTATCGCTATCGCGACAAGCTGCCGATGGACCTGGCCCAGTCCGGC
TACCGTCCGGAATACTGGAAGCCCGAGGACTCGGCCCTGGTCTTCGCCCTGCTCAACTTCGGCCTGGCGGTG
AACCTACAGGAAGAAATCGCCTCGCTGACGCTCGCGCAGAAGGTCGGCAGCGACAAGCTGGCCTGGCTAACG
CCGACCTATCCCGACGAAAACCTGCCGTTCGACGAGGCGGAAAAGCTCAAGGGCCTGCGCCTGGACGGGCAG
GTTCCCGGCCTCGCGGGCGTCGAGGGCGCGGCGCGGCAGGTCGCAGCGCTGAGCATGCTCGGGGTTGCCGCC
TCGAACAACTGGGCTATCGCGCCACAACGCAGCCGCAGCGGCAAGAGCCTGATGGCCAACGACACCCATCTG
CCACTGAGCATGCCGTCGGTGTGGAACTACGTACAGATCCGCTCGCCCAAGTACCAGGCCGCGGGCGTTTCC
ATCGCCGGTCTGCCGGGCGTGGTGGCGGGCTTCAACGGCAAGCTGGCCTGGGGCATGACCATGGTCCTGGGC
GACAACCAGGATCTCTACCTGGAACAGTTGCGACGCCAGGGCAACCGGCTCTATTACCTGGCCGACGGCAAG
TGGCAGCCAACCCGCGAACGCCAGGAAACCTTCTTCATCAAGGGCCAGCGGCCGATCCGCGAGGTCATCCAC
GAAACCCGCCATGGCCCGCTGCTCAACAGCGCCCTGGGCGAACGCAAGAACATCCTCCAGCCGCTGCCGCTG
AAGAGCGGCTACGGACTGGCCTACCGGAGCATCCAGCAGGAAGCCGACAAGACCCTGGACGGCTTCTTCGAC
CTGTCGCGGGCCAAGACCATCGAGCAGGCCTTCGACGCCACCCGCGAGATTCGCGCGATGCCGCTGAACATC
GTGTTCGCCGACGAAAAGCACATCGGCTGGCAGGTCACCGGACGCTATCCGAACCGCAAGGAGGGTCGCGGC
CTGCTGCCCTCCCCTGGCTGGGACGGCCGCTACGACTGGGATGGCTATGCCGACCCGATCCTCCACCCCTCC
GACCAGGACCCGCAGCAGGGCTGGCTGGGTACCGCCAACCACCGCACCGTGCAACCCGGCTACGGCGCTCAG
TTGTCCAACTCCTGGTACTACCCGGAGCGCGCCGAGCGCATCGCCCAGCTCGCCGGTGCCAGCAAGAGCCAC
GACACCCAGAGCATGATCCGCATGCAGTACGACCAGACCTCGCTGTTCGTCGCCAAGCTGCAAGCCATGTTC
GACAATCCCGGCATGGCGGCGCCGCTGCGCCAGGCCATCGACGCCTTGCCGGAGGCGCAACGCAGCCGGGCG
CGGGAGGCCTACGACCGGCTGATGGCGTTCGACGGCAAGCTGACAGCCAGCTCCAGCGACGCCGCGCTGTAC
GGCGCCTTCCTCCACGAGAGCGCCAGGCAGATATTCCTCGACGAGCTAGGACCGGAGGACGGCCCTGCCTGG
AAAGCCTTCGTCGAGACCGCCAACCTCTCCTACTCGGCGCAAGCCGACCACCTGCTCGGGCGCGACGACAGT
CCGTTCTGGGACGATACCCGCACTCCGCAGAAGGAGGACAAGCCGGCAATCCTCGCGCGCAGCCTCGCCGCC
GCCGTGGAGTTCTGCGAACAGCGACTGGGGAGCGAGCGCAAGGCCTGGCAATGGGGCAAGCTGCACACCTAC
GAATGGCGGAGCGACAGCTCGAAAATGGCCCCCTACCTGGGCGCCGGCGAGCGCGCCGGACTCGGCGCGATC
AAGGGCTATCTCGATCGCGGGCCCTATCCGGCCGGCGGCGACCACACCACGCTGGACGTATCGGCCTACGGC
TGGGGCCAGGACTTCGACACTTGGCTGATCCCGGCGATGCGGCTAATCGTCGACTTCGGCCAGAGCGAACCG
ATGATCGGCGTGAACAGCAGCGGCCAATCCGGCAATCCGGCCAGCCCGCACTACGCCGACGGTATCGACGCC
TGGCTCAAGGGGCGCTACGTTAGCTTCCCGTTCCAGCCACAGAACCTCGATCGCGTTTACGGCAACAAGCGG
CTGACGCTCACTCCCGCTCGCTGA