ViewGene
Locus Name:
GeneID:
Location:

GeneID:1387
TrivialName: PA14_15700
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15700
PAO1 Ortholog Locus:PA3766
Sequence Length:1257
Protein Length:418
Start: 1334828
Stop: 1336084
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07153.1|AE004795_5 (AE004795) probable aromatic amino acid transporter [Pseudomonas aeruginosa PAO1]
Identities = 417/418 (99%), Positives = 418/418 (100%)
Sequence:
ATGAGTGATACCCGGGTCCAGCAGTATCAGGATCACGCCGGGGCGGAAGCCGTCGATTCCTCGGGACTGGAG
GTCAAGCGCCTGACGTTCCTCGAGGCGGTGGCGATGATCGTCGGAACCAACATCGGCGCAGGCGTGCTGTCC
ATGGCCTACGCCAGCCGCAAGGCCGGCTTCATGCCATTGCTGCTCTGGCTGGCGGTGGCCGGCCTGTTCACC
ACCATTTCCATGCTCTACGTCTCGGAAACCGCCCTGCGCACGCGCACCCACAACCAGTTGAGTGGCCTTGCC
CAGCGCTATGTCGGCTCCTTCGGCGCCTGGGCGATCTTCCTGTCCGTGGCGGTCAACAGCATCGGCGCGCTG
ATCGCCTACATGAGCGGCAGCGGCAAGATCCTCAGCGCCTTCTTCGGCATCAGCCCGGCCCTGGGCAGCGTG
CTGTTCTTCATTCCGGCCGCCGGCGTGCTGTATCTGGGACTGAGCGCCATCGGCAAGGGCGAGAAGTTCATC
AGCATCGGCATGGTCAGCATGATCCTGATCCTGGTGGCGGCCACCCTGCTCAACGACAATACCGAGTTCGCT
CGCCTGCTCGAAGGCGACTGGATCTACATGGTCCCGGTATTCAACATCGCGGTGTTCTGCTTCTCCGCCCAG
TACATCGTCCCGGAGATGGCCCGTGGTTTCAGCCACGCCCCGGAGCGCCTGCCGAAGGCGGTGATCACCGGG
ATGCTGACCACCTTCGTCCTGCTCAGCATCGTGCCGCTCTCGGTGATCGCCCTGACCGGCCTGGAGAACCAG
TCCGAAGTCGCCACCCTGGCCTGGGGCAAGGCGCTCGGCGAATGGGCCTTCTTCACCGCCAACACCTTCGCC
CTGTGCGCCATGCTGACGTCCTACTGGGGCCTGGGCGGTAGCTTCCTGACCAACATCTTCGACAAGTTCCAC
AAGCTCGGTCCGGAGAACCGGCCGAAGACCCGCCTGCTGGTGCTGGCGATCGTCGCACTGCCGCCGTTCGTC
CTGGCCTACAGCGGGCTGGTCGGCTTCGTCAACGCGCTGTACTTCGCCGGGGCCTTCAGCGGGGTGATTCTC
TCGATCATGCCAATCCTGATGCTGCGCTCGGCGCGCAGGAACGGCGACTTCGAGCCGGCCTGGAAATGCGGC
TGGATCGCCCATCCGGCGATCCAGGCGGTGATCGTGACGATCTACCTGGCCAGCGCCGCCTACGCCATTTGC
AGCGCCATGAACCTGCTGCCGGCCGGCTGGTAG
Translation:
MSDTRVQQYQDHAGAEAVDSSGLEVKRLTFLEAVAMIVGTNIGAGVLSMAYASRKAGFMPLLLWLAVAGLFT
TISMLYVSETALRTRTHNQLSGLAQRYVGSFGAWAIFLSVAVNSIGALIAYMSGSGKILSAFFGISPALGSV
LFFIPAAGVLYLGLSAIGKGEKFISIGMVSMILILVAATLLNDNTEFARLLEGDWIYMVPVFNIAVFCFSAQ
YIVPEMARGFSHAPERLPKAVITGMLTTFVLLSIVPLSVIALTGLENQSEVATLAWGKALGEWAFFTANTFA
LCAMLTSYWGLGGSFLTNIFDKFHKLGPENRPKTRLLVLAIVALPPFVLAYSGLVGFVNALYFAGAFSGVIL
SIMPILMLRSARRNGDFEPAWKCGWIAHPAIQAVIVTIYLASAAYAICSAMNLLPAGW*
AnnotationID:1396GeneID:1387
AnnotatorUID: diggins
Modification Date/Time: 2005-06-14 22:10:43
Gene Name:
Confidence Code:3
GeneProduct:putative amino acid permease
Cell Localization:()
Synonyms:PA3766
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0814,pfam03222
Secondary Functional Category(ies):amino acid transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAB97874.1| (AP005275) Amino acid permeases [Corynebacterium glutamicum ATCC
           13032]
          Length = 397

 Score =  336 bits (862), Expect = 1e-91
 Identities = 170/399 (42%), Positives = 264/399 (66%), Gaps = 5/399 (1%)

>gb|AAG56896.1|AE005412_6 (AE005412) tyrosine-specific transport system [Escherichia coli
           O157:H7 EDL933]
          Length = 403

 Score = 88.2 bits (217), Expect = 9e-17
 Identities = 96/365 (26%), Positives = 153/365 (41%), Gaps = 29/365 (7%)






 
Structural Features:
COG0814, SdaC, Amino acid permeases 
[Amino acid transport and metabolism]
CD-Length = 415 residues,  99.8% aligned
Score =  184 bits (468), Expect = 4e-47
Identities = 104/418 (24%), Positives = 166/418 (39%), Gaps = 28/418 (6%)

pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine permease family.
CD-Length = 393 residues,  92.4% aligned
Score = 97.6 bits (243), Expect = 5e-21
Identities = 83/366 (22%), Positives = 142/366 (38%), Gaps = 21/366 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2777




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19922




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31791




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1387_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1387
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2524
                           PA3766_tr
                           translation of PA3766
                           418
                           99.76
                           99.99
                           0
                           2110.0
     

     
     
80027
                           gb|AAG07153.1|AE004795_5
                           (AE004795) probable aromatic amino acid transporter [Pseudomonas aeruginosa PAO1]
                           418
                           99.76
                           99.99
                           0
                           2110.0
     

     
     
2525
                           PA1916_tr
                           translation of PA1916
                           422
                           55.92
                           74.17
                           16
                           1239.0
     

     
     
80028
                           gb|AAG05304.1|AE004617_8
                           (AE004617) probable amino acid permease [Pseudomonas aeruginosa PAO1]
                           422
                           55.92
                           74.17
                           16
                           1239.0
     

     
     
80029
                           dbj|BAB97874.1|
                           (AP005275) Amino acid permeases [Corynebacterium glutamicum ATCC 13032]
                           420
                           40.47
                           62.85
                           25
                           869.0
     

     






      

          
GC ORFID: 44389How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3766Glimmer Score: 

          
Start: 3619109Stop: 3617853

          
Length: 1257


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA3766 translation of PA3766Homolog Bit Score 817.0

          
Other Homologs:  t_PA1916 (ORF: BLASTX 481.0), t_PA3766 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTGATACCCGGGTCCAGCAGTATCAGGATCACGCCGGGGCGGAAGCCGTCGATTCCTCGGGACTGGAG 
GTCAAGCGCCTGACGTTCCTCGAGGCGGTGGCGATGATCGTCGGAACCAACATCGGCGCAGGCGTGCTGTCC 
ATGGCCTACGCCAGCCGCAAGGCCGGCTTCATGCCATTGCTGCTCTGGCTGGCGGTGGCCGGCCTGTTCACC 
ACCATTTCCATGCTCTACGTCTCGGAAACCGCCCTGCGCACGCGCACCCACAACCAGTTGAGTGGCCTTGCC 
CAGCGCTATGTCGGCTCCTTCGGCGCCTGGGCGATCTTCCTGTCCGTGGCGGTCAACAGCATCGGCGCGCTG 
ATCGCCTACATGAGCGGCAGCGGCAAGATCCTCAGCGCCTTCTTCGGCATCAGCCCGGCCCTGGGCAGCGTG 
CTGTTCTTCATTCCGGCCGCCGGCGTGCTGTATCTGGGACTGAGCGCCATCGGCAAGGGCGAGAAGTTCATC 
AGCATCGGCATGGTCAGCATGATCCTGATCCTGGTGGCGGCCACCCTGCTCAACGACAATACCGAGTTCGCT 
CGCCTGCTCGAAGGCGACTGGATCTACATGGTCCCGGTATTCAACATCGCGGTGTTCTGCTTCTCCGCCCAG 
TACATCGTCCCGGAGATGGCCCGTGGTTTCAGCCACGCCCCGGAGCGCCTGCCGAAGGCGGTGATCACCGGG 
ATGCTGACCACCTTCGTCCTGCTCAGCATCGTGCCGCTCTCGGTGATCGCCCTGACCGGCCTGGAGAACCAG 
TCCGAAGTCGCCACCCTGGCCTGGGGCAAGGCGCTCGGCGAATGGGCCTTCTTCACCGCCAACACCTTCGCC 
CTGTGCGCCATGCTGACGTCCTACTGGGGCCTGGGCGGTAGCTTCCTGACCAACATCTTCGACAAGTTCCAC 
AAGCTCGGTCCGGAGAACCGGCCGAAGACCCGCCTGCTGGTGCTGGCGATCGTCGCACTGCCGCCGTTCGTC 
CTGGCCTACAGCGGGCTGGTCGGCTTCGTCAACGCGCTGTACTTCGCCGGGGCCTTCAGCGGGGTGATTCTC 
TCGATCATGCCAATCCTGATGCTGCGCTCGGCGCGCAGGAACGGCGACTTCGAGCCGGCCTGGAAATGCGGC 
TGGATCGCCCATCCGGCGATCCAGGCGGTGATCGTGACGATCTACCTGGCCAGCGCCGCCTACGCCATTTGC 
AGCGCCATGAACCTGCTGCCGGCCGGCTGGTAG