ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1385

TrivialName: PA14_59550

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_59550

PAO1 Ortholog Locus:

Sequence Length: 1227

Protein Length: 408

Start: 5299690

Stop: 5300916

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAP84187.1| (AY273869) hypothetical protein RL062 [Pseudomonas aeruginosa] Identities = 408/408 (100%), Positives = 408/408 (100%)

Sequence:

ATGGCATTATCTCTTATTCGTAGTCTCACTGCGTCCGCCTCACGAAACATCTCGGCGTTGAAACGCGATGCC
AAACGCTTGCAGAAGAACTCCTTTCTTGTGTTTGGAACAGAATATCCACTCAAGGTTTGCCAAAATGCGGTA
GCAGTTTCTCGCGGCTTCCGCTCACTCGCTGATGTCGATAAACTGGAGCAGCACATTGGCATGAATAGAAGC
GCTCCATTCTGGGTGATCCGTGGCCGCAACGATACACACCAGGGGGTACTGGAAGCGCTATATTGTTTAGAC
CTTGAATATACCGAGAATGGCCCCGTCGTTTTTACTGGAAACCCAAAGCACTCTATACTTCCAGCCTTAGTC
CTTTTTCTTGAGCAAATGAGCTTTAAGAAACTACCCGGACTAATCCTCATCGAAACAAAAGAGACCTCAATC
CAAACAACCCATATATTCGACGCAATAGAAAAATTAGAAGTCGAAGAAACTCTAAATAAATTTCGATTTCTT
GACTTGCGAGACCGAAACCTTCCCGTTTCGCTTAGTACCGAGGCTCGTTGCTGGATCGAGTCAATTGTCAGT
TTATTGCCAAACGACATCCAAGAGGAAATACGTAATAAAGGATGGTCAACTCACTTAGAGATCAGTGCATAT
GAGCATGCAAAGTCTCGTAATCAAGTATTTGGCTCCTCCAACTTCCCTTGCGTCCCCTTCCTCTCCATAAAG
TCAGCGATCTATCAACTCATTTCAGGCGCATACCCTCCCTTATGGATGCAGCCATCCTCCTCTGGCGAAATA
TCTAAAGTTGATATACGCCGACCTCCTCTCGAAAAAAGCTCAGAGGAAACCTTACTTTATCTCATAAAAAAA
TTAGAGAATCGACAGTTCCACACAGGCATTTCATGTGAGCATGAGAGTCGATGGCGGCCGTATGTCGTACTC
TTCTCCAGGAATGATCCGGCTAGCGAGGTACTAGCAGGAGTTATACACTCGTACTTTTCTTGGAAGCAAGAT
AGAGACCATCGCTCACCCACCCTTTATGTTTCAGATGGAGCAGTTCCCTATGCTCCCAAGCTTCTAGGTTTA
GGCGGCCATACGGTCATTGCAAATGGAATCACTGAAATTCCCGACGGGGATGGTCTTGGGGAGTTCTATGGC
TACAAGAACTCACTTAAAGTCAGCTCCTTATCTAACGGAATACAGTTCATGGGTAAGCATGTATCACTAAAG
TAA

Translation:

MALSLIRSLTASASRNISALKRDAKRLQKNSFLVFGTEYPLKVCQNAVAVSRGFRSLADVDKLEQHIGMNRS
APFWVIRGRNDTHQGVLEALYCLDLEYTENGPVVFTGNPKHSILPALVLFLEQMSFKKLPGLILIETKETSI
QTTHIFDAIEKLEVEETLNKFRFLDLRDRNLPVSLSTEARCWIESIVSLLPNDIQEEIRNKGWSTHLEISAY
EHAKSRNQVFGSSNFPCVPFLSIKSAIYQLISGAYPPLWMQPSSSGEISKVDIRRPPLEKSSEETLLYLIKK
LENRQFHTGISCEHESRWRPYVVLFSRNDPASEVLAGVIHSYFSWKQDRDHRSPTLYVSDGAVPYAPKLLGL
GGHTVIANGITEIPDGDGLGEFYGYKNSLKVSSLSNGIQFMGKHVSLK*

AnnotationID:1394 GeneID:1385

AnnotatorUID: diggins

Modification Date/Time: 2006-01-29 11:11:24

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Comment:

ReferenceID:2773

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:19918

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:1385

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

79945 gb|AAP84187.1| (AY273869) hypothetical protein RL062 [Pseudomonas aeruginosa] 408 99.99 99.99 0 2113.0

GC ORFID: `44387`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_RL062`	Glimmer Score:
Start: `4563369`	Stop: `4564595`
Length: `1227`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAA`	Truncated Stop:
Homolog: `t_RL062 408 Homolog: No significant similarity () translation of RL062`	Homolog Bit Score `818.0`
Other Homologs:
GC ORF Sequence
ATGGCATTATCTCTTATTCGTAGTCTCACTGCGTCCGCCTCACGAAACATCTCGGCGTTGAAACGCGATGCC AAACGCTTGCAGAAGAACTCCTTTCTTGTGTTTGGAACAGAATATCCACTCAAGGTTTGCCAAAATGCGGTA GCAGTTTCTCGCGGCTTCCGCTCACTCGCTGATGTCGATAAACTGGAGCAGCACATTGGCATGAATAGAAGC GCTCCATTCTGGGTGATCCGTGGCCGCAACGATACACACCAGGGGGTACTGGAAGCGCTATATTGTTTAGAC CTTGAATATACCGAGAATGGCCCCGTCGTTTTTACTGGAAACCCAAAGCACTCTATACTTCCAGCCTTAGTC CTTTTTCTTGAGCAAATGAGCTTTAAGAAACTACCCGGACTAATCCTCATCGAAACAAAAGAGACCTCAATC CAAACAACCCATATATTCGACGCAATAGAAAAATTAGAAGTCGAAGAAACTCTAAATAAATTTCGATTTCTT GACTTGCGAGACCGAAACCTTCCCGTTTCGCTTAGTACCGAGGCTCGTTGCTGGATCGAGTCAATTGTCAGT TTATTGCCAAACGACATCCAAGAGGAAATACGTAATAAAGGATGGTCAACTCACTTAGAGATCAGTGCATAT GAGCATGCAAAGTCTCGTAATCAAGTATTTGGCTCCTCCAACTTCCCTTGCGTCCCCTTCCTCTCCATAAAG TCAGCGATCTATCAACTCATTTCAGGCGCATACCCTCCCTTATGGATGCAGCCATCCTCCTCTGGCGAAATA TCTAAAGTTGATATACGCCGACCTCCTCTCGAAAAAAGCTCAGAGGAAACCTTACTTTATCTCATAAAAAAA TTAGAGAATCGACAGTTCCACACAGGCATTTCATGTGAGCATGAGAGTCGATGGCGGCCGTATGTCGTACTC TTCTCCAGGAATGATCCGGCTAGCGAGGTACTAGCAGGAGTTATACACTCGTACTTTTCTTGGAAGCAAGAT AGAGACCATCGCTCACCCACCCTTTATGTTTCAGATGGAGCAGTTCCCTATGCTCCCAAGCTTCTAGGTTTA GGCGGCCATACGGTCATTGCAAATGGAATCACTGAAATTCCCGACGGGGATGGTCTTGGGGAGTTCTATGGC TACAAGAACTCACTTAAAGTCAGCTCCTTATCTAACGGAATACAGTTCATGGGTAAGCATGTATCACTAAAG TAA