ViewGene

Locus Name:
GeneID:
Location:

GeneID:1384
TrivialName: PA14_55920
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55920
PAO1 Ortholog Locus:PA4304
Sequence Length:1251
Protein Length:416
Start: 4993074
Stop: 4991824
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07692.1|AE004846_9 (AE004846) probable type II secretion system protein [Pseudomonas aeruginosa PAO1]
Identities = 414/416 (99%), Positives = 414/416 (99%)
Sequence:
ATGCATCGGAGCACCGGGATAGGCGTGTCGCGCTGGCTGGGAGGGCTGCTGGGGGGGGCGTTGGCGCTGCCG
GCACTGGCTTTGCCGCAGGGCTGCATCGAGTTGCTGGCGCAGGCGCCGCGGGTCGACGTCGTCCAGGGACAA
CAGCGTGACCTGCGCCTGGCGGTGCCGATCGAGCGGCTGGCCATCGGCGATCCGAAGATCGCAGACGTACAG
TTGCTGGATCGTCGCGGCTTCCTGGTCACCGGCAAGGAACAGGGCTCCACCAGCCTGCTGATCTGGACCGGC
TGCAGTCCCGAGCCGTTGCGCAGCCTGGTGGAGGTCGAGGGACGCGGTAGCGTCGATACCCGCGGTGCTCCA
GCGTTCACCGCCGGCGCCGCGGAGGAGCTACCGAACCAGGTGCAGACCGATATCCGCTTCGTCGAGGTCAGC
CGCAGCAAGCTGAAGCAGGCCAGCACCTCGTTCGTCCGGCGCGGCGGCAACCTCTGGGTGCTCGGTGCGCCA
GGCAGCCTCGGCGACATCAAGGTCAATGCCGACGGCAGCGGCCTGGGCGGCACCTTCGGCACCGGCAGCTCG
GGATTCAACCTGATCTTCGGCGGCGGCAAGTGGTTGAGCTTCATGAATGCCCTGGAGGGCAGCGGCTTCGCC
TATACCCTGGCGCGCCCGAGCCTGGTGGCGATGAGCGGGCAGAGCGCGTCGTTCCTCGCCGGCGGCGAGTTT
CCGATCCCGGTGCCGAACGGCACCAACGACAACGTCACCATCGAATACAAGGAGTTCGGCATCCGCCTGACC
CTCACCCCGACGGTGATGAACAACCGCCGCATCGCTCTCAAGGTGGCGCCGGAGGTCAGCGAACTGGACTAC
AGCGCCGGCATCCAGAGCGGCGGGGTGGCGGTGCCGGCACTGCGCGTCCGGCGCACCGACACCAGCGTGATG
CTGGCCGATGGCGAGAGTTTCGTGATCAGCGGGCTGACCAGCAGCAACTCGGTGAGCAACGTCGACAAGTTT
CCCTGGCTGGGCGACATCCCGATCCTCGGTGCGTTCTTCCGCTCGACCAAGCTGGACAAGGACGACCGCGAG
CTGCTGATGATCGTCACCCCGCACCTGGTCCAGCCGCTGGCCGCCGACGCACAGTTGCCGGACCTGCCCGGC
GAGGGCTTGCGGCACTACGATCCGGGGTTCTCGCGCCTGTACTTCCTCGAGCGCGGCGAGTACGACGGCCAG
CAGAACGACACCGGCCTGTCGGATTAG
Translation:
MHRSTGIGVSRWLGGLLGGALALPALALPQGCIELLAQAPRVDVVQGQQRDLRLAVPIERLAIGDPKIADVQ
LLDRRGFLVTGKEQGSTSLLIWTGCSPEPLRSLVEVEGRGSVDTRGAPAFTAGAAEELPNQVQTDIRFVEVS
RSKLKQASTSFVRRGGNLWVLGAPGSLGDIKVNADGSGLGGTFGTGSSGFNLIFGGGKWLSFMNALEGSGFA
YTLARPSLVAMSGQSASFLAGGEFPIPVPNGTNDNVTIEYKEFGIRLTLTPTVMNNRRIALKVAPEVSELDY
SAGIQSGGVAVPALRVRRTDTSVMLADGESFVISGLTSSNSVSNVDKFPWLGDIPILGAFFRSTKLDKDDRE
LLMIVTPHLVQPLAADAQLPDLPGEGLRHYDPGFSRLYFLERGEYDGQQNDTGLSD*
AnnotationID:1393GeneID:1384
AnnotatorUID: diggins
Modification Date/Time: 2005-06-09 14:02:33
Gene Name:
Confidence Code:3
GeneProduct:putative type II secretion system protein
Cell Localization:()
Synonyms:PA4304
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:putative pilus assembly protein
Functional Category Confidence Code:5
COGs:COG4964,pfam00263
Secondary Functional Category(ies):intracellular trafficking and secretion
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO58280.1| (AE016873) bacterial type II/III secretion system protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 419

 Score =  437 bits (1123), Expect = e-122
 Identities = 228/391 (58%), Positives = 292/391 (74%), Gaps = 7/391 (1%)
Structural Features:
COG4964, CpaC, Flp pilus assembly protein, secretin CpaC 
[Intracellular trafficking and secretion]
CD-Length = 455 residues,  89.0% aligned
Score =  382 bits (982), Expect = 4e-107
Identities = 164/417 (39%), Positives = 210/417 (50%), Gaps = 21/417 (5%)

pfam00263, Secretin_C, Bacterial type II and III secretion system protein.
CD-Length = 232 residues,  98.7% aligned
Score =  193 bits (491), Expect = 5e-50
Identities = 87/237 (36%), Positives = 125/237 (52%), Gaps = 11/237 (4%)

Genomic Context:
Comment:
ReferenceID:2771
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19916
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36668
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1384_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1384

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2522 PA4304_tr translation of PA4304 416 99.51 99.51 0 2114.0
79942 gb|AAG07692.1|AE004846_9 (AE004846) probable type II secretion system protein [Pseudomonas aeruginosa PAO1] 416 99.51 99.51 0 2114.0
79943 gb|AAO58280.1| (AE016873) bacterial type II/III secretion system protein [Pseudomonas syringae pv. tomato str. DC3000] 428 55.60 70.79 21 1128.0
79944 dbj|BAC62064.1| (AP005086) rough colony protein RcpA [Vibrio parahaemolyticus] 493 26.16 43.61 123 409.0
GC ORFID: 44386How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4304Glimmer Score:
Start: 4256750Stop: 4255500
Length: 1251
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA4304 translation of PA4304Homolog Bit Score 818.0
Other Homologs: psyr_15may02_Scaffold4_revised_gene5760 (ORF: BLASTX 446.0), t_PA4304 (ORF: GLIMMER)
GC ORF Sequence
ATGCATCGGAGCACCGGGATAGGCGTGTCGCGCTGGCTGGGAGGGCTGCTGGGGGGGGCGTTGGCGCTGCCG
GCACTGGCTTTGCCGCAGGGCTGCATCGAGTTGCTGGCGCAGGCGCCGCGGGTCGACGTCGTCCAGGGACAA
CAGCGTGACCTGCGCCTGGCGGTGCCGATCGAGCGGCTGGCCATCGGCGATCCGAAGATCGCAGACGTACAG
TTGCTGGATCGTCGCGGCTTCCTGGTCACCGGCAAGGAACAGGGCTCCACCAGCCTGCTGATCTGGACCGGC
TGCAGTCCCGAGCCGTTGCGCAGCCTGGTGGAGGTCGAGGGACGCGGTAGCGTCGATACCCGCGGTGCTCCA
GCGTTCACCGCCGGCGCCGCGGAGGAGCTACCGAACCAGGTGCAGACCGATATCCGCTTCGTCGAGGTCAGC
CGCAGCAAGCTGAAGCAGGCCAGCACCTCGTTCGTCCGGCGCGGCGGCAACCTCTGGGTGCTCGGTGCGCCA
GGCAGCCTCGGCGACATCAAGGTCAATGCCGACGGCAGCGGCCTGGGCGGCACCTTCGGCACCGGCAGCTCG
GGATTCAACCTGATCTTCGGCGGCGGCAAGTGGTTGAGCTTCATGAATGCCCTGGAGGGCAGCGGCTTCGCC
TATACCCTGGCGCGCCCGAGCCTGGTGGCGATGAGCGGGCAGAGCGCGTCGTTCCTCGCCGGCGGCGAGTTT
CCGATCCCGGTGCCGAACGGCACCAACGACAACGTCACCATCGAATACAAGGAGTTCGGCATCCGCCTGACC
CTCACCCCGACGGTGATGAACAACCGCCGCATCGCTCTCAAGGTGGCGCCGGAGGTCAGCGAACTGGACTAC
AGCGCCGGCATCCAGAGCGGCGGGGTGGCGGTGCCGGCACTGCGCGTCCGGCGCACCGACACCAGCGTGATG
CTGGCCGATGGCGAGAGTTTCGTGATCAGCGGGCTGACCAGCAGCAACTCGGTGAGCAACGTCGACAAGTTT
CCCTGGCTGGGCGACATCCCGATCCTCGGTGCGTTCTTCCGCTCGACCAAGCTGGACAAGGACGACCGCGAG
CTGCTGATGATCGTCACCCCGCACCTGGTCCAGCCGCTGGCCGCCGACGCACAGTTGCCGGACCTGCCCGGC
GAGGGCTTGCGGCACTACGATCCGGGGTTCTCGCGCCTGTACTTCCTCGAGCGCGGCGAGTACGACGGCCAG
CAGAACGACACCGGCCTGTCGGATTAG