ViewGene
Locus Name:
GeneID:
Location:

GeneID:1383
TrivialName: PA14_10910
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10910
PAO1 Ortholog Locus:PA4096
Sequence Length:1260
Protein Length:419
Start: 945029
Stop: 943770
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07483.1|AE004826_1 (AE004826) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 417/419 (99%), Positives = 418/419 (99%)
Sequence:
ATGGCGCATAACAACAATTCCGCCAGTTACGAAAACGTCCTGCTCTGCGTGCTGTTCCTGACCTTCGGCTTC
GTCTTCTTCGACCGCCTGGCGCTGTCCTTCCTGTTTCCCTTCATGGAACAGGAGCTGCAACTGAGCAACAGC
CACCTGGGCATGCTCTCCTCGGTGCTGGCCCTGGCCTGGGCGGTATCCGGCGCGCTGGTCGGCGCCTGGTCC
GACCGCCGCGGGCAGCGCAAGCCGCTGCTGATCGTGGCGGTGATCCTGTTCTCGCTGTGCTCGGCGCTGTCC
GGGCTGGTCGGCGGCTTCCTCAGCCTGCTGCTGTTCCGTGGCATCATGGGCCTGGCCGAGGGGCCGATCCTG
CCGCTCTCGCAATCGCTGATGGTCGAGGCCTCCTCGCCGCATCGCCGCGGCCTCAACATGGGCCTGCTACAG
GGCTCGGCGGCCGGCCTGCTCGGCGCGGTGATCGGCCCGCCGCTGCTGGTGGCCCTGGCCGAAGCCCTCGGC
TGGCGTCACGCCTTCATCGTCTCGTTGCTGCCGGGCCTGCTGATCGCCTGGCTGATCTGGCGCCATGTGCGT
CCCGACCCGCCCCGTGCGCAGCGCCCGGCGCCGCGCGCGGAGGACGCGAAAGGCAAGCGCCTGGCACTGCTG
AAGAGCCGCAACATCCTGCTCTGCACCCTGATCAGTTGCGTATTCGTCACCTGGTTCATCGTGCTGATTTCC
TTTACCCCGACCTTCCTGGTCAACGCCCGCGGCTTCAGCCCGGCGACCATGGGCAGGCTGATGAGCTGCCTG
GGCGTCGCCTGGGTGGTCTGGGGCTTCGCCGTACCGGCGATATCCGATCGCATCGGCCGTCGGCCGACCCTG
GTGGCGTTCTCCCTGCTCGCCGCGTGTTGCCCGCTGGCGCTGCTCTATGCGCCGAACGCGACCAGCCTCGGC
CTGCTGTTGCTGCTGACCTACACCGGGCTCGGCTGCTTCACCCTGTTCATGGCGACCATCCCGGCGGAGACC
GTCTCGCGCGGCGTCATCGCCACCGCCCTCGGCCTGATCATGGGCCTCGGCGAACTGGTCGGCGGTTTCCTC
GCGCCGACCGTGGCCGGCTTCGCCGCCGACCGCTTCGACCTGTCCATCGTCATGTGGATGTCCTGCGGCGGC
GCCCTGCTCGCCGCGTTCCTCTCGCTGTTCCTGCGCGAAACCGCGCCCGCCGTGCTGGCGCGCCAGCGCAGC
GCGCCTACCTCCGTCCTGCAAGGAAACCAACCATGA
Translation:
MAHNNNSASYENVLLCVLFLTFGFVFFDRLALSFLFPFMEQELQLSNSHLGMLSSVLALAWAVSGALVGAWS
DRRGQRKPLLIVAVILFSLCSALSGLVGGFLSLLLFRGIMGLAEGPILPLSQSLMVEASSPHRRGLNMGLLQ
GSAAGLLGAVIGPPLLVALAEALGWRHAFIVSLLPGLLIAWLIWRHVRPDPPRAQRPAPRAEDAKGKRLALL
KSRNILLCTLISCVFVTWFIVLISFTPTFLVNARGFSPATMGRLMSCLGVAWVVWGFAVPAISDRIGRRPTL
VAFSLLAACCPLALLYAPNATSLGLLLLLTYTGLGCFTLFMATIPAETVSRGVIATALGLIMGLGELVGGFL
APTVAGFAADRFDLSIVMWMSCGGALLAAFLSLFLRETAPAVLARQRSAPTSVLQGNQP*
AnnotationID:1392GeneID:1383
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 10:10:46
Gene Name:
Confidence Code:3
GeneProduct:putative major facilitator family transporter
Cell Localization:()
Synonyms:phlE
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2271,COG2814
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56541.1| (AE016866) major facilitator family transporter [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 413

 Score =  661 bits (1706), Expect = 0.0
 Identities = 332/406 (81%), Positives = 368/406 (90%), Gaps = 2/406 (0%)

>gb|AAB48105.1| (U41818) PhlE [Pseudomonas fluorescens]
          Length = 423

 Score =  216 bits (551), Expect = 2e-55
 Identities = 131/404 (32%), Positives = 216/404 (53%), Gaps = 7/404 (1%)






 
Structural Features:
COG2271, UhpC, Sugar phosphate permease 
[Carbohydrate transport and metabolism]
CD-Length = 448 residues,  90.2% aligned
Score = 98.7 bits (246), Expect = 1e-21
Identities = 91/409 (22%), Positives = 157/409 (38%), Gaps = 32/409 (7%)

COG2814, AraJ, Arabinose efflux permease 
[Carbohydrate transport and metabolism]
CD-Length = 394 residues,  89.3% aligned
Score = 95.3 bits (237), Expect = 1e-20
Identities = 94/362 (25%), Positives = 150/362 (41%), Gaps = 10/362 (2%)







   
Genomic Context:






   
Comment:


















    ReferenceID:2769




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19914




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36839




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1383_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1383
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2521
                           PA4096_tr
                           translation of PA4096
                           419
                           99.52
                           99.76
                           0
                           2113.0
     

     
     
79940
                           gb|AAG07483.1|AE004826_1
                           (AE004826) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           419
                           99.52
                           99.76
                           0
                           2113.0
     

     
     
79941
                           gb|AAO56541.1|
                           (AE016866) major facilitator family transporter [Pseudomonas syringae pv. tomato str. DC3000]
                           426
                           78.40
                           86.85
                           20
                           1707.0
     

     






      

          
GC ORFID: 44385How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4096Glimmer Score: 

          
Start: 4008908Stop: 4010167

          
Length: 1260


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4096 translation of PA4096Homolog Bit Score 818.0

          
Other Homologs:  t_PA4096 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCGCATAACAACAATTCCGCCAGTTACGAAAACGTCCTGCTCTGCGTGCTGTTCCTGACCTTCGGCTTC 
GTCTTCTTCGACCGCCTGGCGCTGTCCTTCCTGTTTCCCTTCATGGAACAGGAGCTGCAACTGAGCAACAGC 
CACCTGGGCATGCTCTCCTCGGTGCTGGCCCTGGCCTGGGCGGTATCCGGCGCGCTGGTCGGCGCCTGGTCC 
GACCGCCGCGGGCAGCGCAAGCCGCTGCTGATCGTGGCGGTGATCCTGTTCTCGCTGTGCTCGGCGCTGTCC 
GGGCTGGTCGGCGGCTTCCTCAGCCTGCTGCTGTTCCGTGGCATCATGGGCCTGGCCGAGGGGCCGATCCTG 
CCGCTCTCGCAATCGCTGATGGTCGAGGCCTCCTCGCCGCATCGCCGCGGCCTCAACATGGGCCTGCTACAG 
GGCTCGGCGGCCGGCCTGCTCGGCGCGGTGATCGGCCCGCCGCTGCTGGTGGCCCTGGCCGAAGCCCTCGGC 
TGGCGTCACGCCTTCATCGTCTCGTTGCTGCCGGGCCTGCTGATCGCCTGGCTGATCTGGCGCCATGTGCGT 
CCCGACCCGCCCCGTGCGCAGCGCCCGGCGCCGCGCGCGGAGGACGCGAAAGGCAAGCGCCTGGCACTGCTG 
AAGAGCCGCAACATCCTGCTCTGCACCCTGATCAGTTGCGTATTCGTCACCTGGTTCATCGTGCTGATTTCC 
TTTACCCCGACCTTCCTGGTCAACGCCCGCGGCTTCAGCCCGGCGACCATGGGCAGGCTGATGAGCTGCCTG 
GGCGTCGCCTGGGTGGTCTGGGGCTTCGCCGTACCGGCGATATCCGATCGCATCGGCCGTCGGCCGACCCTG 
GTGGCGTTCTCCCTGCTCGCCGCGTGTTGCCCGCTGGCGCTGCTCTATGCGCCGAACGCGACCAGCCTCGGC 
CTGCTGTTGCTGCTGACCTACACCGGGCTCGGCTGCTTCACCCTGTTCATGGCGACCATCCCGGCGGAGACC 
GTCTCGCGCGGCGTCATCGCCACCGCCCTCGGCCTGATCATGGGCCTCGGCGAACTGGTCGGCGGTTTCCTC 
GCGCCGACCGTGGCCGGCTTCGCCGCCGACCGCTTCGACCTGTCCATCGTCATGTGGATGTCCTGCGGCGGC 
GCCCTGCTCGCCGCGTTCCTCTCGCTGTTCCTGCGCGAAACCGCGCCCGCCGTGCTGGCGCGCCAGCGCAGC 
GCGCCTACCTCCGTCCTGCAAGGAAACCAACCATGA