ViewGene
Locus Name:
GeneID:
Location:

GeneID:1382
TrivialName: PA14_27500
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27500
PAO1 Ortholog Locus:PA2828
Sequence Length:1212
Protein Length:403
Start: 2388245
Stop: 2387034
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06216.1|AE004709_9 (AE004709) probable aminotransferase [Pseudomonas aeruginosa PAO1]
Identities = 403/403 (100%), Positives = 403/403 (100%)
Sequence:
ATGCAGGTCAGCAAATCGAACAAGCTCGCCAACGTCTGCTATGACATTCGCGGGCCGGTGCTCAAGCACGCC
AAACGCCTAGAGGAAGAGGGTCACCGCATCCTCAAGCTGAATATCGGCAACCCGGCGCCGTTCGGTTTCGAA
GCTCCCGAGGAAATCCTCCAGGACGTCATCCGCAACCTGCCGACCGCCCAGGGCTACAGCGACTCCAAGGGT
CTGTTCAGCGCGCGCAAGGCAGTGATGCAGTATTACCAGCAGAAGCAGGTGGAGGGCGTCGGCATCGAGGAC
ATCTACCTCGGCAACGGCGTGTCGGAACTGATCGTGATGTCCATGCAGGCGCTGCTGAACAACGGCGACGAG
GTGCTGATCCCCGCTCCCGACTACCCGCTGTGGACCGCCGCGGTCAGCCTCGCCGGCGGCAAGCCGGTGCAC
TACCTGTGCGACGAGCAGGCCAACTGGTGGCCGGACCTCGAAGACATCAAGGCGAAGATCACGCCGAACACC
AGGGCGATGGTGATCATCAACCCGAACAACCCCACCGGTGCGGTGTATTCCAGGGAAGTGCTGGAAGGCATG
GTCGAGCTGGCCCGCCAGCACAACCTGGTGCTGTTCTCCGACGAGATCTACGACAAGATCCTCTACGACGGC
GCCGTCCACGTCTCCACCGCCTCGCTGGCGCCGGACGTGCTCTGCCTGACCTTCAACGGCCTGTCCAAATCC
TACCGGGTGGCCGGCTTCCGCTCCGGCTGGGTGGCGATCTCCGGACCCAAGCAGCGGGCACAGAGCTATATC
GAAGGTCTCGACATCCTCGCCAACATGCGCCTGTGCGCCAACGTCCCGGCGCAGCACGCGATCCAGACCGCC
CTGGGCGGCTACCAGAGCATCAACGATCTGGTCCTGCCGCCGGGGCGCCTGCTGGAGCAGCGCAACCGCGCC
TGGGAACTGCTCAACGACATCCCCGGCGTCAGTTGCGTGAAGCCGATGGGCGCGCTGTACGCCTTCCCGCGG
ATCGACCCGAAGGTCTGCCCGATCCACAACGACGAAAAGTTCGTCCTCGACCTGCTGCTCTCGGAAAAACTG
CTGATCGTCCAGGGCACCGCCTTCAACTGGCCGTGGCCCGACCACTTCCGGGTGGTCACCCTGCCCCGCGTC
GATGACCTGGAGCAGGCGATCCTGCGCATCGGCAGCTTCCTCAAGGGCTACCAGCAGTAA
Translation:
MQVSKSNKLANVCYDIRGPVLKHAKRLEEEGHRILKLNIGNPAPFGFEAPEEILQDVIRNLPTAQGYSDSKG
LFSARKAVMQYYQQKQVEGVGIEDIYLGNGVSELIVMSMQALLNNGDEVLIPAPDYPLWTAAVSLAGGKPVH
YLCDEQANWWPDLEDIKAKITPNTRAMVIINPNNPTGAVYSREVLEGMVELARQHNLVLFSDEIYDKILYDG
AVHVSTASLAPDVLCLTFNGLSKSYRVAGFRSGWVAISGPKQRAQSYIEGLDILANMRLCANVPAQHAIQTA
LGGYQSINDLVLPPGRLLEQRNRAWELLNDIPGVSCVKPMGALYAFPRIDPKVCPIHNDEKFVLDLLLSEKL
LIVQGTAFNWPWPDHFRVVTLPRVDDLEQAILRIGSFLKGYQQ*
AnnotationID:1391GeneID:1382
AnnotatorUID: diggins
Modification Date/Time: 2004-12-06 08:08:39
Gene Name:
Confidence Code:3
GeneProduct:putative aminotransferase
Cell Localization:()
Synonyms:yfbQ
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0436
Secondary Functional Category(ies):amino acid transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55299.1| (AE016862) aminotransferase, classes I and II [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 403

 Score =  773 bits (1997), Expect = 0.0
 Identities = 374/403 (92%), Positives = 393/403 (97%)

>gb|AAN67491.1|AE016376_1 (AE016780) aminotransferase, class I [Pseudomonas putida KT2440]
          Length = 403

 Score =  755 bits (1950), Expect = 0.0
 Identities = 370/403 (91%), Positives = 387/403 (96%)

>gb|AAL21232.1| (AE008804) putative aminotransferase (ortho) [Salmonella
           typhimurium LT2]
          Length = 404

 Score =  640 bits (1651), Expect = 0.0
 Identities = 301/401 (75%), Positives = 354/401 (88%)






 
Structural Features:
COG0436, Aspartate/tyrosine/aromatic aminotransferase 
[Amino acid transport and metabolism]






   
Genomic Context:






   
Comment:


















    ReferenceID:2767




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19912




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36245




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1382_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1382
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2520
                           PA2828_tr
                           translation of PA2828
                           403
                           99.99
                           99.99
                           0
                           2112.0
     

     
     
79879
                           gb|AAG06216.1|AE004709_9
                           (AE004709) probable aminotransferase [Pseudomonas aeruginosa PAO1]
                           403
                           99.99
                           99.99
                           0
                           2112.0
     

     
     
79880
                           gb|AAO55299.1|
                           (AE016862) aminotransferase, classes I and II [Pseudomonas syringae pv. tomato str. DC3000]
                           403
                           92.80
                           97.51
                           0
                           1997.0
     

     
     
79881
                           gb|AAN67491.1|AE016376_1
                           (AE016780) aminotransferase, class I [Pseudomonas putida KT2440]
                           403
                           91.81
                           96.02
                           0
                           1950.0
     

     
     
79884
                           emb|CAD07563.1|
                           (AL627274) putative aminotransferase [Salmonella enterica subsp. enterica serovar Typhi]
                           404
                           74.50
                           87.62
                           1
                           1649.0
     

     






      

          
GC ORFID: 44384How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2828Glimmer Score: 

          
Start: 2565682Stop: 2566893

          
Length: 1212


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA2828 translation of PA2828Homolog Bit Score 818.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7666 (ORF: BLASTX 773.0), t_PA2828 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAGGTCAGCAAATCGAACAAGCTCGCCAACGTCTGCTATGACATTCGCGGGCCGGTGCTCAAGCACGCC 
AAACGCCTAGAGGAAGAGGGTCACCGCATCCTCAAGCTGAATATCGGCAACCCGGCGCCGTTCGGTTTCGAA 
GCTCCCGAGGAAATCCTCCAGGACGTCATCCGCAACCTGCCGACCGCCCAGGGCTACAGCGACTCCAAGGGT 
CTGTTCAGCGCGCGCAAGGCAGTGATGCAGTATTACCAGCAGAAGCAGGTGGAGGGCGTCGGCATCGAGGAC 
ATCTACCTCGGCAACGGCGTGTCGGAACTGATCGTGATGTCCATGCAGGCGCTGCTGAACAACGGCGACGAG 
GTGCTGATCCCCGCTCCCGACTACCCGCTGTGGACCGCCGCGGTCAGCCTCGCCGGCGGCAAGCCGGTGCAC 
TACCTGTGCGACGAGCAGGCCAACTGGTGGCCGGACCTCGAAGACATCAAGGCGAAGATCACGCCGAACACC 
AGGGCGATGGTGATCATCAACCCGAACAACCCCACCGGTGCGGTGTATTCCAGGGAAGTGCTGGAAGGCATG 
GTCGAGCTGGCCCGCCAGCACAACCTGGTGCTGTTCTCCGACGAGATCTACGACAAGATCCTCTACGACGGC 
GCCGTCCACGTCTCCACCGCCTCGCTGGCGCCGGACGTGCTCTGCCTGACCTTCAACGGCCTGTCCAAATCC 
TACCGGGTGGCCGGCTTCCGCTCCGGCTGGGTGGCGATCTCCGGACCCAAGCAGCGGGCACAGAGCTATATC 
GAAGGTCTCGACATCCTCGCCAACATGCGCCTGTGCGCCAACGTCCCGGCGCAGCACGCGATCCAGACCGCC 
CTGGGCGGCTACCAGAGCATCAACGATCTGGTCCTGCCGCCGGGGCGCCTGCTGGAGCAGCGCAACCGCGCC 
TGGGAACTGCTCAACGACATCCCCGGCGTCAGTTGCGTGAAGCCGATGGGCGCGCTGTACGCCTTCCCGCGG 
ATCGACCCGAAGGTCTGCCCGATCCACAACGACGAAAAGTTCGTCCTCGACCTGCTGCTCTCGGAAAAACTG 
CTGATCGTCCAGGGCACCGCCTTCAACTGGCCGTGGCCCGACCACTTCCGGGTGGTCACCCTGCCCCGCGTC 
GATGACCTGGAGCAGGCGATCCTGCGCATCGGCAGCTTCCTCAAGGGCTACCAGCAGTAA