ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1381

TrivialName: PA14_40250

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_40250

PAO1 Ortholog Locus: PA1875

Sequence Length: 1278

Protein Length: 425

Start: 3588570

Stop: 3587293

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05264.1|AE004613_9 (AE004613) probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1] Identities = 423/425 (99%), Positives = 423/425 (99%)

Sequence:

ATGCGCGGGCGCAGGCAGTACGCGCGCAAGGGACGGCGGCATGGGAAGGGAGCCATCTGGCTCCTTTCCCTG
GGCCTGCCGATGTTCGCGTCGGCCATGCCCCTCGACCAGGCGGTCAGGGCAGGGCTGGCGATCCACCCGGAA
GTACGATCCGCGATGGCCGAAGCGGACCGCGCAGGCACCGAGGTGGAGATGGCCAAAGGGGGGTACTACCCC
TCCGTGACGATGTCCGGAGGGCCGCAGGAGTTCGACTTCGGCGAGATCGTCTACGATCTCACCGCGTCGCAG
ATGCTGTACGACTGGGGGCGGGTGACGAGCAAGGTCGACAGCGCCAGCGCGACCCAGCGCAAGCTGTCCGAG
GCGGTGCTGGTGGCGCGCGACGACGCGGCGCTGGATATCGTCGAGACCTACCTCGACGTGCTCGCCTCGGAG
CGCCGGGTGGAGGTGGTGCGCGAACACATCCTGCGCCTCGACGGCATCCGCGAGATGACCCAGGCGCGCGGC
GGCGACGGCTACGCCGACCGCAGCGAGCTGGATCGCGCCAATCTGGAACTGTCGCGGGCCCAGGAGCAGTTG
TCGCTGGAGAAGGGCAACCTGCAGGACGCGCGCAACCAGTACGCGATCCTGGTCGGCCAGGAGCCCGCCGAC
CTGGTGGAGCCCGAGCCGATGTCGCTGCAACGCTACCTGGCGGCCAGCGATATGGCGCGGGTGATCCGCGAA
TCGCCTTTGCAGCGCAAGGCCCTGGAGGACGCCAATGTCGCCGAGGCCGAGGTCCGCGAGGCCAAGGCGTCG
CTGCTGCCGCAACTGAACCTGGAGGCCAGCGCGCTGCGCCGGGAGATCGGCGGGCATCCGGAAAGCGACTCG
GTGGTATCCCTGCGCTTCCGCATGGACACCTTCCAGGGGCTTTCCAACTTCCGCCGGCCGACCGCCGCGCAG
CAGCGCCTGGAATCGGCGAAATGGAGCGCCGACGCGATGCAGCGCGACATCCGCCGGCAACTGCAGAACCTC
TTCGACAACGGCGACACGCTGCGCTGGCGGGAACAGTCGCTGACCCAGCAGGTGACCGAGTCGGAGCAGGTC
GGCGAGTTGTATCGCGAACAGTTCGAGGTTGGCCGGCGCGACGTGATCGACCTGCTCAACGTGCAGCGCGAG
CGGTTCGAGGCAGAGCGGCAACTGATCAACCTGCGGATCGAACGCAAGCGCATCGAGTATCGGGCGGCCGCG
CAAGTCGGCCTGTTGGGTCCGCTATTGGAGAACCGGCTGAATCATGGAAGCTGA

Translation:

MRGRRQYARKGRRHGKGAIWLLSLGLPMFASAMPLDQAVRAGLAIHPEVRSAMAEADRAGTEVEMAKGGYYP
SVTMSGGPQEFDFGEIVYDLTASQMLYDWGRVTSKVDSASATQRKLSEAVLVARDDAALDIVETYLDVLASE
RRVEVVREHILRLDGIREMTQARGGDGYADRSELDRANLELSRAQEQLSLEKGNLQDARNQYAILVGQEPAD
LVEPEPMSLQRYLAASDMARVIRESPLQRKALEDANVAEAEVREAKASLLPQLNLEASALRREIGGHPESDS
VVSLRFRMDTFQGLSNFRRPTAAQQRLESAKWSADAMQRDIRRQLQNLFDNGDTLRWREQSLTQQVTESEQV
GELYREQFEVGRRDVIDLLNVQRERFEAERQLINLRIERKRIEYRAAAQVGLLGPLLENRLNHGS*

AnnotationID:1390 GeneID:1381

AnnotatorUID: diggins

Modification Date/Time: 2005-03-02 07:07:50

Gene Name:

Confidence Code: 3

GeneProduct: putative outer membrane protein precursor

Cell Localization: ()

Synonyms: opmL

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (15) Membrane proteins

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG1538

Secondary Functional Category(ies): cell envelope biogenesis, outer membrane

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

COG1538, TolC, Outer membrane protein 
[Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]
CD-Length = 457 residues,  91.9% aligned
Score =  161 bits (408), Expect = 2e-40
Identities = 93/420 (22%), Positives = 170/420 (40%), Gaps = 22/420 (5%)

Genomic Context:

Comment:

ReferenceID:2765

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:19910

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:37044

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 1381_cdd.html

URL:

Homologs By Global Alignment

Gene ID:1381

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2519 PA1875_tr translation of PA1875 425 99.52 99.52 0 2112.0

79878 gb|AAG05264.1|AE004613_9 (AE004613) probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1] 425 99.52 99.52 0 2112.0

GC ORFID: `44383`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA1875`	Glimmer Score:
Start: `1365340`	Stop: `1366617`
Length: `1278`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA1875 translation of PA1875`	Homolog Bit Score `818.0`
Other Homologs: `t_PA1875 (ORF: GLIMMER)`
GC ORF Sequence
ATGCGCGGGCGCAGGCAGTACGCGCGCAAGGGACGGCGGCATGGGAAGGGAGCCATCTGGCTCCTTTCCCTG GGCCTGCCGATGTTCGCGTCGGCCATGCCCCTCGACCAGGCGGTCAGGGCAGGGCTGGCGATCCACCCGGAA GTACGATCCGCGATGGCCGAAGCGGACCGCGCAGGCACCGAGGTGGAGATGGCCAAAGGGGGGTACTACCCC TCCGTGACGATGTCCGGAGGGCCGCAGGAGTTCGACTTCGGCGAGATCGTCTACGATCTCACCGCGTCGCAG ATGCTGTACGACTGGGGGCGGGTGACGAGCAAGGTCGACAGCGCCAGCGCGACCCAGCGCAAGCTGTCCGAG GCGGTGCTGGTGGCGCGCGACGACGCGGCGCTGGATATCGTCGAGACCTACCTCGACGTGCTCGCCTCGGAG CGCCGGGTGGAGGTGGTGCGCGAACACATCCTGCGCCTCGACGGCATCCGCGAGATGACCCAGGCGCGCGGC GGCGACGGCTACGCCGACCGCAGCGAGCTGGATCGCGCCAATCTGGAACTGTCGCGGGCCCAGGAGCAGTTG TCGCTGGAGAAGGGCAACCTGCAGGACGCGCGCAACCAGTACGCGATCCTGGTCGGCCAGGAGCCCGCCGAC CTGGTGGAGCCCGAGCCGATGTCGCTGCAACGCTACCTGGCGGCCAGCGATATGGCGCGGGTGATCCGCGAA TCGCCTTTGCAGCGCAAGGCCCTGGAGGACGCCAATGTCGCCGAGGCCGAGGTCCGCGAGGCCAAGGCGTCG CTGCTGCCGCAACTGAACCTGGAGGCCAGCGCGCTGCGCCGGGAGATCGGCGGGCATCCGGAAAGCGACTCG GTGGTATCCCTGCGCTTCCGCATGGACACCTTCCAGGGGCTTTCCAACTTCCGCCGGCCGACCGCCGCGCAG CAGCGCCTGGAATCGGCGAAATGGAGCGCCGACGCGATGCAGCGCGACATCCGCCGGCAACTGCAGAACCTC TTCGACAACGGCGACACGCTGCGCTGGCGGGAACAGTCGCTGACCCAGCAGGTGACCGAGTCGGAGCAGGTC GGCGAGTTGTATCGCGAACAGTTCGAGGTTGGCCGGCGCGACGTGATCGACCTGCTCAACGTGCAGCGCGAG CGGTTCGAGGCAGAGCGGCAACTGATCAACCTGCGGATCGAACGCAAGCGCATCGAGTATCGGGCGGCCGCG CAAGTCGGCCTGTTGGGTCCGCTATTGGAGAACCGGCTGAATCATGGAAGCTGA