ViewGene
Locus Name:
GeneID:
Location:

GeneID:1380
TrivialName: PA14_45660
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45660
PAO1 Ortholog Locus:PA1453
Sequence Length:1290
Protein Length:429
Start: 4061686
Stop: 4060397
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04842.1|AE004575_1 (AE004575) flagellar biosynthesis protein FlhF [Pseudomonas aeruginosa PAO1]
Identities = 425/429 (99%), Positives = 426/429 (99%)
Sequence:
ATGCAAGTCAAACGCTTCTTCGCCGCCGATATGCGTCAGGCCATGAAACTGGTCCGCGACGAACTGGGTCCG
GACGCCGCGATTCTCGGCAACCGCCGGGTCGCCGGCGGCATCGAGCTGACCGCGGCGCTGGATTACCAGGCC
CCGCCGGCGCCGAGCAAGCCCAACCCGGCGCTGGAAGTGGAGCTGCGCAAGACCCAGGCGCGGATCGCCGAG
GCGCGCGCCGAATTGACGGCGCGTCCGGCGGAAAACCAGCGCAAGGACCGTCAATTGTTCGCCGAGGAGAAG
CCGGCGCGTCCGTCCCTGGCCGAGTCCATGACGGCGGCGCAGGCCAAGCCCCAGGCGGGCGGCCAGACCCTC
GAGGCAATGCGTTTCGAACTGAACGGCCTGCGCGAGCTGATCGAGGTACAACTGGGTTCCATCGCCTGGGGC
CAGTTGCAGCACCAGCGTCCGCAGCAGGCCAATCTCTGGCGGCGCCTGCAGCGCATGGGCTTGCCGGCGGAG
CTGAGCAAGCCGTTGCTGGAGCGGGTCGCCGCGGTGGGCGATACGCGCCAGGCCTGGCGCATGCTGTTGGCG
CACCTGTCGCGTGCCGTGCAGACCCCCGAGCAGGACCCGCTCGACGCGGGCGGCGTACTGGCCCTGGTCGGC
CCGGCAGGCGCCGGCAAGACCACCACCCTGGCGAAGATGGCCGCGCGCTACGTCCTCAAGTACGGCGCCCAG
AGCCTGGCGCTGGTGAGCATGGACAGCTACCGGATCGGCGCCCAGGAGCAGATCAAGACCCTCGGTCGGATC
CTCAACGTACCGGTGACCCTGGTCGATCCCGGCCAGTCGCTGATCCAGGCCCTGGCGCCGCTGGCGCGCAAA
CGCATGGTGCTGATCGATACCGCCGGCCTGCCGGCCAGCGACCCGGCATTGCGCATGCAGCTCGAGGCACTG
GCGTCGCCGAGCCTGAACGTGAAGAATTACCTGGTGATGGCCACCACCAGCCAGAGCCAGGTGCTCAAGTCG
GCCTACCAGACCTATCGGCACTGCGGGCTGGCGGGTTGCATCCTGACTAAGCTGGACGAGGCGGGCAGCCTC
GGTGAATCGATGGCGCTGGCTATCGCCCAGCGTCTCCCGGTAGCCTATCTGGCGGATGGGCCGCGGATTCCG
GACGACCTGCAGGTGGCGCGCAGTCACCAACTGGTCAGCCGGGCGGTGAGCCTGCAGGCACCGGAAGAGCCC
AGCGAGGACGCCATGGCCGAGATGTTCGCCGGGCTCTACCAGCAACCGGCGCGGCGTGCCGGCTGA
Translation:
MQVKRFFAADMRQAMKLVRDELGPDAAILGNRRVAGGIELTAALDYQAPPAPSKPNPALEVELRKTQARIAE
ARAELTARPAENQRKDRQLFAEEKPARPSLAESMTAAQAKPQAGGQTLEAMRFELNGLRELIEVQLGSIAWG
QLQHQRPQQANLWRRLQRMGLPAELSKPLLERVAAVGDTRQAWRMLLAHLSRAVQTPEQDPLDAGGVLALVG
PAGAGKTTTLAKMAARYVLKYGAQSLALVSMDSYRIGAQEQIKTLGRILNVPVTLVDPGQSLIQALAPLARK
RMVLIDTAGLPASDPALRMQLEALASPSLNVKNYLVMATTSQSQVLKSAYQTYRHCGLAGCILTKLDEAGSL
GESMALAIAQRLPVAYLADGPRIPDDLQVARSHQLVSRAVSLQAPEEPSEDAMAEMFAGLYQQPARRAG*
AnnotationID:1389GeneID:1380
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 12:12:41
Gene Name:flhF
Confidence Code:2
GeneProduct:flagellar biosynthesis protein FlhF
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1419
Secondary Functional Category(ies):chemotaxis
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55495.1| (AE016862) flagellar biosynthesis protein FlhF [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 442

 Score =  552 bits (1423), Expect = e-156
 Identities = 291/442 (65%), Positives = 342/442 (77%), Gaps = 13/442 (2%)

>gb|AAF67042.1|AF183382_2 (AF183382) flagellar protein FlhF [Pseudomonas putida]
          Length = 437

 Score =  544 bits (1402), Expect = e-154
 Identities = 292/439 (66%), Positives = 341/439 (77%), Gaps = 12/439 (2%)








 
Structural Features:
COG1419, FlhF, Flagellar GTP-binding protein 
[Cell motility and secretion]
CD-Length = 407 residues, 100.0% aligned
Score =  417 bits (1072), Expect = 2e-117
Identities = 149/417 (35%), Positives = 224/417 (53%), Gaps = 14/417 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2763




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19908




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37380




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1380_cdd.html


    		




 
URL:

















    ReferenceID:37967




  
Author/Investigator(s):
        Carpenter PB, Hanlon DW, Ordal GW.





  
Title:
        flhF, a Bacillus subtilis flagellar gene that encodes a putative GTP-binding protein.




  
PubMed:
        1447978


MedLine:
        




    
Source:
Mol Microbiol. 1992 Sep;6(18):2705-13.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1447978









           
Homologs By Global Alignment 

           

       



     
Gene ID:1380
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2518
                           PA1453_tr
                           translation of PA1453
                           429
                           99.06
                           99.30
                           0
                           2114.0
     

     
     
79870
                           gb|AAG04842.1|AE004575_1
                           (AE004575) flagellar biosynthesis protein FlhF [Pseudomonas aeruginosa PAO1]
                           429
                           99.06
                           99.30
                           0
                           2114.0
     

     
     
79871
                           gb|AAN03365.1|AF481091_2
                           (AF481091) FlhF [Pseudomonas fluorescens]
                           438
                           68.03
                           78.08
                           9
                           1445.0
     

     
     
79872
                           gb|AAO55495.1|
                           (AE016862) flagellar biosynthesis protein FlhF [Pseudomonas syringae pv. tomato str. DC3000]
                           444
                           65.54
                           77.25
                           17
                           1435.0
     

     
     
79875
                           gb|AAN69922.1|AE016631_1
                           (AE016790) flagellar biosynthetic protein FlhF [Pseudomonas putida KT2440]
                           446
                           65.47
                           77.57
                           28
                           1419.0
     

     






      

          
GC ORFID: 44382How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1453Glimmer Score: 

          
Start: 892223Stop: 893512

          
Length: 1290


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1453 translation of PA1453Homolog Bit Score 818.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7937 (ORF: BLASTX 552.0), t_PA1453 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAAGTCAAACGCTTCTTCGCCGCCGATATGCGTCAGGCCATGAAACTGGTCCGCGACGAACTGGGTCCG 
GACGCCGCGATTCTCGGCAACCGCCGGGTCGCCGGCGGCATCGAGCTGACCGCGGCGCTGGATTACCAGGCC 
CCGCCGGCGCCGAGCAAGCCCAACCCGGCGCTGGAAGTGGAGCTGCGCAAGACCCAGGCGCGGATCGCCGAG 
GCGCGCGCCGAATTGACGGCGCGTCCGGCGGAAAACCAGCGCAAGGACCGTCAATTGTTCGCCGAGGAGAAG 
CCGGCGCGTCCGTCCCTGGCCGAGTCCATGACGGCGGCGCAGGCCAAGCCCCAGGCGGGCGGCCAGACCCTC 
GAGGCAATGCGTTTCGAACTGAACGGCCTGCGCGAGCTGATCGAGGTACAACTGGGTTCCATCGCCTGGGGC 
CAGTTGCAGCACCAGCGTCCGCAGCAGGCCAATCTCTGGCGGCGCCTGCAGCGCATGGGCTTGCCGGCGGAG 
CTGAGCAAGCCGTTGCTGGAGCGGGTCGCCGCGGTGGGCGATACGCGCCAGGCCTGGCGCATGCTGTTGGCG 
CACCTGTCGCGTGCCGTGCAGACCCCCGAGCAGGACCCGCTCGACGCGGGCGGCGTACTGGCCCTGGTCGGC 
CCGGCAGGCGCCGGCAAGACCACCACCCTGGCGAAGATGGCCGCGCGCTACGTCCTCAAGTACGGCGCCCAG 
AGCCTGGCGCTGGTGAGCATGGACAGCTACCGGATCGGCGCCCAGGAGCAGATCAAGACCCTCGGTCGGATC 
CTCAACGTACCGGTGACCCTGGTCGATCCCGGCCAGTCGCTGATCCAGGCCCTGGCGCCGCTGGCGCGCAAA 
CGCATGGTGCTGATCGATACCGCCGGCCTGCCGGCCAGCGACCCGGCATTGCGCATGCAGCTCGAGGCACTG 
GCGTCGCCGAGCCTGAACGTGAAGAATTACCTGGTGATGGCCACCACCAGCCAGAGCCAGGTGCTCAAGTCG 
GCCTACCAGACCTATCGGCACTGCGGGCTGGCGGGTTGCATCCTGACTAAGCTGGACGAGGCGGGCAGCCTC 
GGTGAATCGATGGCGCTGGCTATCGCCCAGCGTCTCCCGGTAGCCTATCTGGCGGATGGGCCGCGGATTCCG 
GACGACCTGCAGGTGGCGCGCAGTCACCAACTGGTCAGCCGGGCGGTGAGCCTGCAGGCACCGGAAGAGCCC 
AGCGAGGACGCCATGGCCGAGATGTTCGCCGGGCTCTACCAGCAACCGGCGCGGCGTGCCGGCTGA