ViewGene

Locus Name:
GeneID:
Location:

GeneID:1378
TrivialName: PA14_62440
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62440
PAO1 Ortholog Locus:PA4719
Sequence Length:1296
Protein Length:431
Start: 5569828
Stop: 5571123
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08105.1|AE004885_10 (AE004885) probable transporter [Pseudomonas aeruginosa PAO1]
Identities = 431/431 (100%), Positives = 431/431 (100%)
Sequence:
ATGCTGGAAAAGCTGTTTCAACTAAAGGCGCACAACACCACGGTGCGCACCGAGATCCTGGCGGGGATCACC
ACCTTCCTGACCATGGCCTACATCCTCTTCGTCAACCCGAGCATCCTCGGCGAGACCGGCATGGACAAGGGC
GCGGTGTTCGTCGCCACCTGCCTGGCAGCGGCCATCGGCTCGACCATCATGGGCCTGATCGCCAACTACCCG
ATCGCCCTGGCCCCCGGCATGGGCCTCAACGCCTTCTTCACCTACACCGTGGTGCTGCACATGGGCCACAGC
TGGCAGGTCGCGTTGGGCGCAGTGTTCATTTCCGCCACCATGTTCTTCCTGCTGTCGATCTTTCGCATCCGC
GAATGGATCATCAACAGCATCCCCCTGCCGCTGCGCTCGGCGATCGCCGCCGGTATCGGCCTGTTCCTCGCA
CTGATCGCCCTGCAGAACGCGGGCATCGTGGTGGACAACCCGGCAACCCTGATCGGCATGGGCGACCTGACC
AAGCCGGCACCGATCCTCGCCACCCTCGGCTTCATCCTGATCGTCGCCCTGGAGGCGCGTAGCGTCACCGGC
GCGGTGCTGATCGGTATCCTGGTGGTCACCGCCATCGCCATCCTGCTCGGCGTAACCCAGTTCGGCGGCGTG
GTCTCGATGCCGCCGTCGCTGGCGCCGACCTTCCTCCAACTGGACATCAAGGGCGCGCTGGACATCGGCCTG
GTCAGCGTGATCTTCGCCTTCCTCTTCGTCGACCTGTTCGACAACTCCGGCACCCTGATCGGCGTCGCCAAG
CGCGCCGGATTGATGGGCAAGGACGGCCACATGCCGAAGATGGGCCGCGCGCTGATCGCCGACAGTACCGCC
GCCATGGGCGGCTCGCTGCTGGGCACCTCGACCACCACCAGCTACATCGAGTCCGCCGCGGGCGTCAGCGCC
GGCGGCCGCACCGGCCTGACCGCCATCGTCGTCGCCATCCTGTTCCTCCTCGCGCTGTTCTTCGCCCCGCTG
GCCGGCAGCGTACCGGCCTTCGCCACCGCCCCGGCGCTGCTCTTCGTCGCCGTACTGATGGCCTCGGGCCTG
GCAGAGATCGACTGGGAAGACATCACCGTCGCCGCGCCGGTGGTCGTCACCGCGCTGGCCATGCCGTTCACC
TACTCGATCGCCACCGGCATCGCCTTCGGCTTCATTTCCTGGACCGCGATCAAGGTGCTGTCCGGGCGCTGG
CGCGAACTGAACCCGGCGCTGGTGATCCTCTCCGTCCTGTTCGTGATCAAGCTGGGCTTCTTCAACGCATGA
Translation:
MLEKLFQLKAHNTTVRTEILAGITTFLTMAYILFVNPSILGETGMDKGAVFVATCLAAAIGSTIMGLIANYP
IALAPGMGLNAFFTYTVVLHMGHSWQVALGAVFISATMFFLLSIFRIREWIINSIPLPLRSAIAAGIGLFLA
LIALQNAGIVVDNPATLIGMGDLTKPAPILATLGFILIVALEARSVTGAVLIGILVVTAIAILLGVTQFGGV
VSMPPSLAPTFLQLDIKGALDIGLVSVIFAFLFVDLFDNSGTLIGVAKRAGLMGKDGHMPKMGRALIADSTA
AMGGSLLGTSTTTSYIESAAGVSAGGRTGLTAIVVAILFLLALFFAPLAGSVPAFATAPALLFVAVLMASGL
AEIDWEDITVAAPVVVTALAMPFTYSIATGIAFGFISWTAIKVLSGRWRELNPALVILSVLFVIKLGFFNA*
AnnotationID:1387GeneID:1378
AnnotatorUID: diggins
Modification Date/Time: 2005-03-09 06:06:27
Gene Name:
Confidence Code:3
GeneProduct:putative transporter
Cell Localization:()
Synonyms:yieG
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative xanthine/uracil permease family protein
Functional Category Confidence Code:5
COGs:COG2252
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO58099.1| (AE016872) xanthine/uracil permease family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 431

 Score =  761 bits (1964), Expect = 0.0
 Identities = 391/431 (90%), Positives = 411/431 (95%)

>gb|AAN70226.1|AE016662_2 (AE016791) transporter, putative [Pseudomonas putida KT2440]
          Length = 431

 Score =  739 bits (1907), Expect = 0.0
 Identities = 379/431 (87%), Positives = 405/431 (93%)

>emb|CAC49185.1| (AL603644) putative integral membrane transporter protein,
           xanthineuracil permeases family [Sinorhizobium meliloti]
          Length = 457

 Score =  546 bits (1408), Expect = e-155
 Identities = 264/429 (61%), Positives = 349/429 (81%), Gaps = 1/429 (0%)

Structural Features:
COG2252, Permeases
CD-Length = 436 residues,  98.9% aligned
Score =  424 bits (1093), Expect = 8e-120
Identities = 273/431 (63%), Positives = 332/431 (77%), Gaps = 2/431 (0%)
Genomic Context:
Comment:
ReferenceID:2759
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19904
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37636
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1378_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1378

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2515 PA4719_tr translation of PA4719 431 99.99 99.99 0 2115.0
79561 gb|AAG08105.1|AE004885_10 (AE004885) probable transporter [Pseudomonas aeruginosa PAO1] 431 99.99 99.99 0 2115.0
79563 dbj|BAA88496.1| (AB023289) hypothetical protein [Pseudomonas fluorescens] 431 90.95 95.82 0 1961.0
79562 gb|AAO58099.1| (AE016872) xanthine/uracil permease family protein [Pseudomonas syringae pv. tomato str. DC3000] 431 90.71 95.35 0 1964.0
79564 gb|AAN70226.1|AE016662_2 (AE016791) transporter, putative [Pseudomonas putida KT2440] 431 87.93 93.96 0 1907.0
GC ORFID: 44380How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4719Glimmer Score:
Start: 4833508Stop: 4834803
Length: 1296
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4719 translation of PA4719Homolog Bit Score 819.0
Other Homologs: psyr_15may02_Scaffold4_revised_gene5656 (ORF: BLASTX 758.0), t_PA1519 (ORF: BLASTX 519.0), t_PA4719 (ORF: GLIMMER)
GC ORF Sequence
ATGCTGGAAAAGCTGTTTCAACTAAAGGCGCACAACACCACGGTGCGCACCGAGATCCTGGCGGGGATCACC
ACCTTCCTGACCATGGCCTACATCCTCTTCGTCAACCCGAGCATCCTCGGCGAGACCGGCATGGACAAGGGC
GCGGTGTTCGTCGCCACCTGCCTGGCAGCGGCCATCGGCTCGACCATCATGGGCCTGATCGCCAACTACCCG
ATCGCCCTGGCCCCCGGCATGGGCCTCAACGCCTTCTTCACCTACACCGTGGTGCTGCACATGGGCCACAGC
TGGCAGGTCGCGTTGGGCGCAGTGTTCATTTCCGCCACCATGTTCTTCCTGCTGTCGATCTTTCGCATCCGC
GAATGGATCATCAACAGCATCCCCCTGCCGCTGCGCTCGGCGATCGCCGCCGGTATCGGCCTGTTCCTCGCA
CTGATCGCCCTGCAGAACGCGGGCATCGTGGTGGACAACCCGGCAACCCTGATCGGCATGGGCGACCTGACC
AAGCCGGCACCGATCCTCGCCACCCTCGGCTTCATCCTGATCGTCGCCCTGGAGGCGCGTAGCGTCACCGGC
GCGGTGCTGATCGGTATCCTGGTGGTCACCGCCATCGCCATCCTGCTCGGCGTAACCCAGTTCGGCGGCGTG
GTCTCGATGCCGCCGTCGCTGGCGCCGACCTTCCTCCAACTGGACATCAAGGGCGCGCTGGACATCGGCCTG
GTCAGCGTGATCTTCGCCTTCCTCTTCGTCGACCTGTTCGACAACTCCGGCACCCTGATCGGCGTCGCCAAG
CGCGCCGGATTGATGGGCAAGGACGGCCACATGCCGAAGATGGGCCGCGCGCTGATCGCCGACAGTACCGCC
GCCATGGGCGGCTCGCTGCTGGGCACCTCGACCACCACCAGCTACATCGAGTCCGCCGCGGGCGTCAGCGCC
GGCGGCCGCACCGGCCTGACCGCCATCGTCGTCGCCATCCTGTTCCTCCTCGCGCTGTTCTTCGCCCCGCTG
GCCGGCAGCGTACCGGCCTTCGCCACCGCCCCGGCGCTGCTCTTCGTCGCCGTACTGATGGCCTCGGGCCTG
GCAGAGATCGACTGGGAAGACATCACCGTCGCCGCGCCGGTGGTCGTCACCGCGCTGGCCATGCCGTTCACC
TACTCGATCGCCACCGGCATCGCCTTCGGCTTCATTTCCTGGACCGCGATCAAGGTGCTGTCCGGGCGCTGG
CGCGAACTGAACCCGGCGCTGGTGATCCTCTCCGTCCTGTTCGTGATCAAGCTGGGCTTCTTCAACGCATGA