ViewGene
Locus Name:
GeneID:
Location:

GeneID:1374
TrivialName: PA14_34580
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34580
PAO1 Ortholog Locus:PA2324
Sequence Length:1260
Protein Length:419
Start: 3073445
Stop: 3072186
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05712.1|AE004658_6 (AE004658) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 415/419 (99%), Positives = 416/419 (99%)
Sequence:
ATGAACGCCCGCGTCCATCCCGAAGCCACCGCCGCCAGTCTCTCCGAAGGCGCCGACTACGAACTGCTCGCC
CAGCGTTTCCGACCGATCTTCGCGCGCATCGCCGAAGGCGCCGTCGAGCGCGAACGGCAACGCGAACTGCCC
CACGAGGCGATCGCCTGGCTCAAGCAGGCCGGCTTCGGCGCCGTGCGCGTGCCGCGCGAGCACGGCGGCGCC
GGCGCCTCGCTGGCGCAATTGGTTCAGTTGCTGATCGAACTGGCCGAGGCCGACTCCAACATCACTCAGGCC
CTGCGCGGCCACTTCGCCTTCGTCGAGGACCGTCTCAATGCCGAGCCCGGCCCTGGCCGCGACCGTTGGCTG
CGGCGCTTCGTCGAGGGCGACCTGGTCGGCTGCGCCTGGACCGAGGTCGGTTCGGTACGGCTGGGCGAAGTG
CTCACCCGCGTCTCGCGCAAGGACGACGGTCGCTGGGTGGTGAACGGCAGCAAGTACTACAGCACCGGCAGC
CTCTTCTCCGACTGGATCGATCTGTATGCCCAGCGCGACGACACCGGCGCCGACGTGATCGCGGCGATCCGC
ACCGACCAGCCCGGCGTGCGCCAGAGCGACGACTGGGACGGCTTCGGCCAGCGCACCACCGGCAGCGGCACA
TCGCTGTTCGAGGACGCCGAGGTGGAGGAAGAGAACCTCATCGACTTCGCCAGCCGCTTCAAGTACCAGACC
GCGTTCTACCAGTTGGTCCTGCTCGCGGTGCTGGCCGGCACCGGCCGCGCCGCCTTGCGCGACGTCGCCGCC
GAGGTGCGCGGGCGGACCCGTATCTACAGCCACGGCAATGCCCCGCGAGTCAGCCAGGATCCCCAGGTGCAG
CAGGTGGTCGGGCGCATCGCCGCGCGCGTCTACGCCGCCGAGGCGGCCACCCTGCGCGCCGCCGAAGCGGCC
CAGCGCGCCTACCTGGCGCGTTTCGTAGGCGACCCGCAGGCGGAGAAGGAGGCCAATGTCGCCGCCGAGATC
GAATCGGCCAAGGCCCAGGCGATCGTCGCCGAACTGGTGTTGCAGGCCACCAGCGAGCTGTTCGACGCCAGC
GGCGCTTCCGCCGTCGGCCGCGGCAAGCAGCTCGACCGCCACTGGCGCAATGCGCGCACCGCCGCCTCGCAC
AATCCCCTGATCTACAAGCAACGGATCGTCGGCGACTGGGAGATCAACGGCAGCGAGCCGCCCTACGTCTGG
CAGATCGGCAGCGGTCCGGCCACGGCGTCCCGCTGA
Translation:
MNARVHPEATAASLSEGADYELLAQRFRPIFARIAEGAVERERQRELPHEAIAWLKQAGFGAVRVPREHGGA
GASLAQLVQLLIELAEADSNITQALRGHFAFVEDRLNAEPGPGRDRWLRRFVEGDLVGCAWTEVGSVRLGEV
LTRVSRKDDGRWVVNGSKYYSTGSLFSDWIDLYAQRDDTGADVIAAIRTDQPGVRQSDDWDGFGQRTTGSGT
SLFEDAEVEEENLIDFASRFKYQTAFYQLVLLAVLAGTGRAALRDVAAEVRGRTRIYSHGNAPRVSQDPQVQ
QVVGRIAARVYAAEAATLRAAEAAQRAYLARFVGDPQAEKEANVAAEIESAKAQAIVAELVLQATSELFDAS
GASAVGRGKQLDRHWRNARTAASHNPLIYKQRIVGDWEINGSEPPYVWQIGSGPATASR*
AnnotationID:1383GeneID:1374
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 13:01:02
Gene Name:
Confidence Code:3
GeneProduct:putative flavin reductase dependent enzyme
Cell Localization:()
Synonyms:PA2324
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd01163
Secondary Functional Category(ies):central intermediary metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56484.1| (AE016866) acyl-CoA dehydrogenase family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 412

 Score =  569 bits (1466), Expect = e-161
 Identities = 286/404 (70%), Positives = 330/404 (81%), Gaps = 1/404 (0%)

>gb|AAL46308.1| (AE009426) thermophilic desulfurizing enzyme [Agrobacterium
           tumefaciens str. C58 (U. Washington)]
          Length = 404

 Score =  304 bits (778), Expect = 8e-82
 Identities = 169/400 (42%), Positives = 245/400 (61%), Gaps = 15/400 (3%)






 
Structural Features:
cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C (DszC).
CD-Length = 377 residues, 100.0% aligned
Score =  420 bits (1082), Expect = 1e-118






   
Genomic Context:






   
Comment:


















    ReferenceID:2751




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19896




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32471




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1374_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1374
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2509
                           PA2324_tr
                           translation of PA2324
                           419
                           99.04
                           99.28
                           0
                           2119.0
     

     
     
79367
                           gb|AAG05712.1|AE004658_6
                           (AE004658) hypothetical protein PA2324 [Pseudomonas aeruginosa PAO1]
                           419
                           99.04
                           99.28
                           0
                           2119.0
     

     
     
79368
                           gb|AAN68370.1|AE016469_12
                           (AE016784) conserved hypothetical protein [Pseudomonas putida KT2440]
                           419
                           70.16
                           81.38
                           7
                           1544.0
     

     
     
79369
                           gb|AAO56484.1|
                           (AE016866) acyl-CoA dehydrogenase family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           420
                           68.33
                           79.52
                           9
                           1463.0
     

     
     
79370
                           gb|AAM35742.1|
                           (AE011717) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           442
                           43.66
                           57.69
                           31
                           884.0
     

     






      

          
GC ORFID: 44376How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2324Glimmer Score: 

          
Start: 1880471Stop: 1881730

          
Length: 1260


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2324 translation of PA2324Homolog Bit Score 820.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene7115 (ORF: BLASTX 582.0), t_PA2324 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGCCCGCGTCCATCCCGAAGCCACCGCCGCCAGTCTCTCCGAAGGCGCCGACTACGAACTGCTCGCC 
CAGCGTTTCCGACCGATCTTCGCGCGCATCGCCGAAGGCGCCGTCGAGCGCGAACGGCAACGCGAACTGCCC 
CACGAGGCGATCGCCTGGCTCAAGCAGGCCGGCTTCGGCGCCGTGCGCGTGCCGCGCGAGCACGGCGGCGCC 
GGCGCCTCGCTGGCGCAATTGGTTCAGTTGCTGATCGAACTGGCCGAGGCCGACTCCAACATCACTCAGGCC 
CTGCGCGGCCACTTCGCCTTCGTCGAGGACCGTCTCAATGCCGAGCCCGGCCCTGGCCGCGACCGTTGGCTG 
CGGCGCTTCGTCGAGGGCGACCTGGTCGGCTGCGCCTGGACCGAGGTCGGTTCGGTACGGCTGGGCGAAGTG 
CTCACCCGCGTCTCGCGCAAGGACGACGGTCGCTGGGTGGTGAACGGCAGCAAGTACTACAGCACCGGCAGC 
CTCTTCTCCGACTGGATCGATCTGTATGCCCAGCGCGACGACACCGGCGCCGACGTGATCGCGGCGATCCGC 
ACCGACCAGCCCGGCGTGCGCCAGAGCGACGACTGGGACGGCTTCGGCCAGCGCACCACCGGCAGCGGCACA 
TCGCTGTTCGAGGACGCCGAGGTGGAGGAAGAGAACCTCATCGACTTCGCCAGCCGCTTCAAGTACCAGACC 
GCGTTCTACCAGTTGGTCCTGCTCGCGGTGCTGGCCGGCACCGGCCGCGCCGCCTTGCGCGACGTCGCCGCC 
GAGGTGCGCGGGCGGACCCGTATCTACAGCCACGGCAATGCCCCGCGAGTCAGCCAGGATCCCCAGGTGCAG 
CAGGTGGTCGGGCGCATCGCCGCGCGCGTCTACGCCGCCGAGGCGGCCACCCTGCGCGCCGCCGAAGCGGCC 
CAGCGCGCCTACCTGGCGCGTTTCGTAGGCGACCCGCAGGCGGAGAAGGAGGCCAATGTCGCCGCCGAGATC 
GAATCGGCCAAGGCCCAGGCGATCGTCGCCGAACTGGTGTTGCAGGCCACCAGCGAGCTGTTCGACGCCAGC 
GGCGCTTCCGCCGTCGGCCGCGGCAAGCAGCTCGACCGCCACTGGCGCAATGCGCGCACCGCCGCCTCGCAC 
AATCCCCTGATCTACAAGCAACGGATCGTCGGCGACTGGGAGATCAACGGCAGCGAGCCGCCCTACGTCTGG 
CAGATCGGCAGCGGTCCGGCCACGGCGTCCCGCTGA