ViewGene
Locus Name:
GeneID:
Location:

GeneID:1373
TrivialName: PA14_46030
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46030
PAO1 Ortholog Locus:PA1423
Sequence Length:1254
Protein Length:417
Start: 4094639
Stop: 4095892
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04812.1|AE004571_11 (AE004571) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1]
Identities = 414/417 (99%), Positives = 415/417 (99%)
Sequence:
ATGGCAGCGCTGGACCGCTCCATGGCGCGCGTGGAGTTCGACCCCGACGGCAACATCATCGATGCCAATGAG
AATTTCCTGACCCTGCTGGGCTACCGCCGCGACGAGATCCTCGGCAAACCGCATCGCCAGCTTTGCGACGGC
GCCTACGCGCAATCGGAAGACTACCGGCGCTTCTGGGAACGCCTGCGGCGCGGCGAACACTTTTCCGGCCGC
TGCAAGCGCATTACCCGCGAGGGCCGGCCACTCTGGCTGGAAGCCACCTACAACCCCGTACGCGACGGGCAG
GGTCGACTGCTCAAGGTGGTCAAGTACGCCAGCGACATCGATGCCATCGTCCACCAGGAACACGAGATGCAG
AGCAAGCTGGATGCCCTGTCCCGCTCGATGGCGATGATCGAGTTCGACCTCGACGGCAATGTCCTCGCGGCC
AACGACAACTTCCTCGCCACCATGGGCTATGGCCGAGCCGAGCTGGCCAGCGCCAACCACCGTCAGTTCTGC
GAACCGGGCTACCGCGACGGCCCGCAGTACGCCGACCTCTGGCGCCGCCTGAACCGCGGCGAGTACGTTACC
GGGCAGTTCCGCCGGGTCCACCGCAACGGCCAGCCGGTCTGGCTGGAAGCCAGCTACAACCCGGTCTACGAC
GCCGACGGCAAGCTGTTCAAGGTGGTCAAGTTCGCCAGCGACGTCAGCGACCGCATGCGCCGCTACCAGGCC
GAGGCGGACAACGCCCACCAGGCCCACACCCTGTCCACCGAGACCCGCACCGTCGCCGAACACGGCGCGCTG
ATCATCCAGAGCGCGGTGGAGGAAATGCTCAAGATCGCGAATACCCTGGATGCTTCCTCGCTGAACATCGGC
GAACTGTCACAGCACTCGCAACAGATCACCTCGATCGTCAACACCATCCGCGAGATCGCCGAGCAGACCAAC
CTGCTCGCCCTCAATGCCGCCATCGAGGCCGCCCGCGCCGGCGACCAGGGTCGCGGCTTCGCCGTGGTGGCC
GACGAGGTGCGGCAACTGGCGGAGCGCACCAGCAAGTCGACCAAGGAGATCGCCGACATGATCGGTCGCATC
CAGACCGGCACCCGCAGCGTCATCGACGACATGCAGCACAGCCAGGAACAGGCACGGCGCGGCGTGGAGCTG
GCCAACGAGGCCGGCACGGCGATCCTCGGCATCCGCGAGAGCACGCACAAGGTGGTGGAGGCGGTGCAGCAG
TTCTCGCGCACCCTCAACGCCGATCTCTAG
Translation:
MAALDRSMARVEFDPDGNIIDANENFLTLLGYRRDEILGKPHRQLCDGAYAQSEDYRRFWERLRRGEHFSGR
CKRITREGRPLWLEATYNPVRDGQGRLLKVVKYASDIDAIVHQEHEMQSKLDALSRSMAMIEFDLDGNVLAA
NDNFLATMGYGRAELASANHRQFCEPGYRDGPQYADLWRRLNRGEYVTGQFRRVHRNGQPVWLEASYNPVYD
ADGKLFKVVKFASDVSDRMRRYQAEADNAHQAHTLSTETRTVAEHGALIIQSAVEEMLKIANTLDASSLNIG
ELSQHSQQITSIVNTIREIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRQLAERTSKSTKEIADMIGRI
QTGTRSVIDDMQHSQEQARRGVELANEAGTAILGIRESTHKVVEAVQQFSRTLNADL*
AnnotationID:1382GeneID:1373
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 07:07:00
Gene Name:
Confidence Code:3
GeneProduct:putative chemotaxis transducer
Cell Localization:()
Synonyms:PA1423
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(10) Chemotaxis
Alternate Gene Product Name:putative methyl-accepting chemotaxis transducer/sensory box protein
Functional Category Confidence Code:5
COGs:COG0840,smart00283
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58777.1| (AE016875) methyl-accepting chemotaxis protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 448

 Score =  437 bits (1123), Expect = e-122
 Identities = 219/413 (53%), Positives = 292/413 (70%)

>gb|AAN69016.1|AE016533_8 (AE016786) methyl-accepting chemotaxis transducer/sensory box
           protein [Pseudomonas putida KT2440]
          Length = 439

 Score =  376 bits (966), Expect = e-103
 Identities = 201/413 (48%), Positives = 273/413 (66%), Gaps = 3/413 (0%)








 
Structural Features:
COG0840, Tar, Methyl-accepting chemotaxis protein 
[Cell motility and secretion / Signal transduction mechanisms]
CD-Length = 408 residues,  86.3% aligned
Score =  159 bits (402), Expect = 6e-40
Identities = 91/357 (25%), Positives = 153/357 (42%), Gaps = 5/357 (1%)

smart00283, MA, Methyl-accepting chemotaxis-like domains 
(chemotaxis sensory transducer). 
CD-Length = 262 residues,  66.0% aligned
Score =  157 bits (397), Expect = 3e-39
Identities = 72/173 (41%), Positives = 104/173 (60%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2749




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19894




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37423




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1373_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1373
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2497
                           PA1423_tr
                           translation of PA1423
                           417
                           99.28
                           99.52
                           0
                           2119.0
     

     
     
79159
                           gb|AAG04812.1|AE004571_11
                           (AE004571) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1]
                           417
                           99.28
                           99.52
                           0
                           2119.0
     

     
     
79160
                           gb|AAO58777.1|
                           (AE016875) methyl-accepting chemotaxis protein [Pseudomonas syringae pv. tomato str. DC3000]
                           448
                           49.33
                           65.62
                           31
                           1121.0
     

     
     
79163
                           gb|AAN69016.1|AE016533_8
                           (AE016786) methyl-accepting chemotaxis transducer/sensory box protein [Pseudomonas putida KT2440]
                           443
                           45.37
                           61.62
                           30
                           967.0
     

     
     
79161
                           gb|AAQ59373.1|
                           (AE016916) probable methyl-accepting chemotaxis protein [Chromobacterium violaceum ATCC 12472]
                           442
                           45.02
                           63.12
                           26
                           1016.0
     

     






      

          
GC ORFID: 44375How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1423Glimmer Score: 

          
Start: 859270Stop: 858017

          
Length: 1254


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1423 translation of PA1423Homolog Bit Score 820.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6948 (ORF: BLASTX 433.0), psyr_15may02_Scaffold3_revised_gene4245 (ORF: BLASTX 342.0), t_PA1423 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCAGCGCTGGACCGCTCCATGGCGCGCGTGGAGTTCGACCCCGACGGCAACATCATCGATGCCAATGAG 
AATTTCCTGACCCTGCTGGGCTACCGCCGCGACGAGATCCTCGGCAAACCGCATCGCCAGCTTTGCGACGGC 
GCCTACGCGCAATCGGAAGACTACCGGCGCTTCTGGGAACGCCTGCGGCGCGGCGAACACTTTTCCGGCCGC 
TGCAAGCGCATTACCCGCGAGGGCCGGCCACTCTGGCTGGAAGCCACCTACAACCCCGTACGCGACGGGCAG 
GGTCGACTGCTCAAGGTGGTCAAGTACGCCAGCGACATCGATGCCATCGTCCACCAGGAACACGAGATGCAG 
AGCAAGCTGGATGCCCTGTCCCGCTCGATGGCGATGATCGAGTTCGACCTCGACGGCAATGTCCTCGCGGCC 
AACGACAACTTCCTCGCCACCATGGGCTATGGCCGAGCCGAGCTGGCCAGCGCCAACCACCGTCAGTTCTGC 
GAACCGGGCTACCGCGACGGCCCGCAGTACGCCGACCTCTGGCGCCGCCTGAACCGCGGCGAGTACGTTACC 
GGGCAGTTCCGCCGGGTCCACCGCAACGGCCAGCCGGTCTGGCTGGAAGCCAGCTACAACCCGGTCTACGAC 
GCCGACGGCAAGCTGTTCAAGGTGGTCAAGTTCGCCAGCGACGTCAGCGACCGCATGCGCCGCTACCAGGCC 
GAGGCGGACAACGCCCACCAGGCCCACACCCTGTCCACCGAGACCCGCACCGTCGCCGAACACGGCGCGCTG 
ATCATCCAGAGCGCGGTGGAGGAAATGCTCAAGATCGCGAATACCCTGGATGCTTCCTCGCTGAACATCGGC 
GAACTGTCACAGCACTCGCAACAGATCACCTCGATCGTCAACACCATCCGCGAGATCGCCGAGCAGACCAAC 
CTGCTCGCCCTCAATGCCGCCATCGAGGCCGCCCGCGCCGGCGACCAGGGTCGCGGCTTCGCCGTGGTGGCC 
GACGAGGTGCGGCAACTGGCGGAGCGCACCAGCAAGTCGACCAAGGAGATCGCCGACATGATCGGTCGCATC 
CAGACCGGCACCCGCAGCGTCATCGACGACATGCAGCACAGCCAGGAACAGGCACGGCGCGGCGTGGAGCTG 
GCCAACGAGGCCGGCACGGCGATCCTCGGCATCCGCGAGAGCACGCACAAGGTGGTGGAGGCGGTGCAGCAG 
TTCTCGCGCACCCTCAACGCCGATCTCTAG