ViewGene
Locus Name:
GeneID:
Location:

GeneID:1372
TrivialName: PA14_64450
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64450
PAO1 Ortholog Locus:PA4873
Sequence Length:1266
Protein Length:421
Start: 5741612
Stop: 5742877
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08258.1|AE004900_12 (AE004900) probable heat-shock protein [Pseudomonas aeruginosa PAO1]
Identities = 420/421 (99%), Positives = 420/421 (99%)
Sequence:
ATGAACCCGAGCACCGCCGCCCGCGCCCTGGGCATCGATTTTGGCACCTCCAACTCCACCGTCGGCTGGTGG
CGGCCGGAGGTCGAACCGCTGATCGAGCTGGAGGACGGCAAGATCACCCTGCCCTCGGTGGTGTTCTTCAAC
GTCGAGGAGCGCCGCCCGGTCTACGGCCGCCAGGCGCTCGGCGAGTACCTGGAGGGCTACGAGGGCCGGCTG
ATGCGCTCGCTGAAGAGCCTGCTGGGCTCCAAGCTGCTGAAGAGCGAGACCACCGTGCTCGGCAGCGCCCTG
CCGTTCAAGGACCTGCTCGGCCTGTTCATCGGCCAGCTCAAGGCGCGCGGCGAGGCCGCCGCCGGGCAAGCC
TTCGACGCGGTGGTGCTGGGTCGCCCGGTGTTCTTCGTCGACGACGACCCGGAGGCCGACCGCGAGGCCCAG
GACACCCTGGTGCAGGTGGCCAACAAGCTCGGCTTCAAGGAGGTTTCCTTCCAGTACGAACCGATCGCCGCG
GCCTTCGACTACGAGCGCGGCATCCAGCGCGAGGAACTGGTCCTGATCGTCGACATCGGCGGCGGCACCTCG
GACTTCTCCCTGGTGCGCCTGGCGCCGGAGCGGCGCAACCTGGCCGAGCGCCAGGACGACATCCTGGCCACC
GGCGGCGTGCACATCGGCGGTACCGACTTCGACAAGCAGCTCAGCCTGGAAGGCGTGATGCCGCTGTTCGGC
TACGGCAGCCGGATGAAGAGCGACGCCTTCATGCCCACCAGCTACCACCTGAACCTGGCCACTTGGCACACC
ATCAACGCGGTGTACGCGCAGAAGTCGCAATTGGCGCTGAAGAACATGCGCTACGACATCGTCGACAGCACC
GGCATCGACCGCCTCTTCAGGCTCATCGAGGAACGCGCCGGGCACTGGCTGGCGATGCAGGTGGAAGACAGC
AAGATCCGCCTGACCGAAACCGAGCGCCTGCACCTCTCGCTGGAGCGCATCGAGGCCGGGCTCGGCGTGGAG
CTGACCCGTGGGCTGTTCGAGAACGCCGTCGACGGACTGCTGGAGCGCGTGCGCAACAGCGTCGCGCAACTG
CTGGCCTCGGCCGGGGTCGACCCGGACCGGGTCGACACGGTGTTCTTCACCGGCGGTTCGAGCGGCATTCCG
GCGCTGCGCCGGAGCGTCTCGGCGATGCTGCCCAACGCCCGTCATGTCGAGGGCAACCTGTTCGGCAGCATC
GGCAGCGGCCTGGCCATCGAGGCGAAGAAGCGCTATGGCTGA
Translation:
MNPSTAARALGIDFGTSNSTVGWWRPEVEPLIELEDGKITLPSVVFFNVEERRPVYGRQALGEYLEGYEGRL
MRSLKSLLGSKLLKSETTVLGSALPFKDLLGLFIGQLKARGEAAAGQAFDAVVLGRPVFFVDDDPEADREAQ
DTLVQVANKLGFKEVSFQYEPIAAAFDYERGIQREELVLIVDIGGGTSDFSLVRLAPERRNLAERQDDILAT
GGVHIGGTDFDKQLSLEGVMPLFGYGSRMKSDAFMPTSYHLNLATWHTINAVYAQKSQLALKNMRYDIVDST
GIDRLFRLIEERAGHWLAMQVEDSKIRLTETERLHLSLERIEAGLGVELTRGLFENAVDGLLERVRNSVAQL
LASAGVDPDRVDTVFFTGGSSGIPALRRSVSAMLPNARHVEGNLFGSIGSGLAIEAKKRYG*
AnnotationID:1381GeneID:1372
AnnotatorUID: diggins
Modification Date/Time: 2004-11-05 05:05:59
Gene Name:
Confidence Code:3
GeneProduct:putative heat shock protein
Cell Localization:()
Synonyms:yegD
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(9) Chaperones & heat shock proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70418.1|AE016683_9 (AE016792) dnaK protein, putative [Pseudomonas putida KT2440]
          Length = 423

 Score =  669 bits (1726), Expect = 0.0
 Identities = 338/421 (80%), Positives = 373/421 (88%)

>gb|AAO58327.1| (AE016873) heat shock protein YegD [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 421

 Score =  653 bits (1684), Expect = 0.0
 Identities = 327/421 (77%), Positives = 372/421 (88%)

>emb|CAD14169.1| (AL646060) PROBABLE HEAT SHOCK PROTEIN [Ralstonia solanacearum]
          Length = 417

 Score =  462 bits (1190), Expect = e-129
 Identities = 228/414 (55%), Positives = 302/414 (72%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:2747




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19892




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35191




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1372_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1372
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2496
                           PA4873_tr
                           translation of PA4873
                           421
                           99.76
                           99.76
                           0
                           2120.0
     

     
     
79153
                           gb|AAG08258.1|AE004900_12
                           (AE004900) probable heat-shock protein [Pseudomonas aeruginosa PAO1]
                           421
                           99.76
                           99.76
                           0
                           2120.0
     

     
     
79154
                           gb|AAN70418.1|AE016683_9
                           (AE016792) dnaK protein, putative [Pseudomonas putida KT2440]
                           423
                           79.90
                           88.17
                           2
                           1726.0
     

     
     
79155
                           gb|AAO58327.1|
                           (AE016873) heat shock protein YegD [Pseudomonas syringae pv. tomato str. DC3000]
                           421
                           77.67
                           88.36
                           0
                           1684.0
     

     
     
79156
                           gb|AAQ60067.1|
                           (AE016918) probable heat-shock protein Hsp 70 [Chromobacterium violaceum ATCC 12472]
                           421
                           65.79
                           81.23
                           0
                           1433.0
     

     






      

          
GC ORFID: 44374How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4873Glimmer Score: 

          
Start: 5005293Stop: 5006558

          
Length: 1266


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4873 translation of PA4873Homolog Bit Score 821.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5813 (ORF: BLASTX 644.0), t_PA4873 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCCGAGCACCGCCGCCCGCGCCCTGGGCATCGATTTTGGCACCTCCAACTCCACCGTCGGCTGGTGG 
CGGCCGGAGGTCGAACCGCTGATCGAGCTGGAGGACGGCAAGATCACCCTGCCCTCGGTGGTGTTCTTCAAC 
GTCGAGGAGCGCCGCCCGGTCTACGGCCGCCAGGCGCTCGGCGAGTACCTGGAGGGCTACGAGGGCCGGCTG 
ATGCGCTCGCTGAAGAGCCTGCTGGGCTCCAAGCTGCTGAAGAGCGAGACCACCGTGCTCGGCAGCGCCCTG 
CCGTTCAAGGACCTGCTCGGCCTGTTCATCGGCCAGCTCAAGGCGCGCGGCGAGGCCGCCGCCGGGCAAGCC 
TTCGACGCGGTGGTGCTGGGTCGCCCGGTGTTCTTCGTCGACGACGACCCGGAGGCCGACCGCGAGGCCCAG 
GACACCCTGGTGCAGGTGGCCAACAAGCTCGGCTTCAAGGAGGTTTCCTTCCAGTACGAACCGATCGCCGCG 
GCCTTCGACTACGAGCGCGGCATCCAGCGCGAGGAACTGGTCCTGATCGTCGACATCGGCGGCGGCACCTCG 
GACTTCTCCCTGGTGCGCCTGGCGCCGGAGCGGCGCAACCTGGCCGAGCGCCAGGACGACATCCTGGCCACC 
GGCGGCGTGCACATCGGCGGTACCGACTTCGACAAGCAGCTCAGCCTGGAAGGCGTGATGCCGCTGTTCGGC 
TACGGCAGCCGGATGAAGAGCGACGCCTTCATGCCCACCAGCTACCACCTGAACCTGGCCACTTGGCACACC 
ATCAACGCGGTGTACGCGCAGAAGTCGCAATTGGCGCTGAAGAACATGCGCTACGACATCGTCGACAGCACC 
GGCATCGACCGCCTCTTCAGGCTCATCGAGGAACGCGCCGGGCACTGGCTGGCGATGCAGGTGGAAGACAGC 
AAGATCCGCCTGACCGAAACCGAGCGCCTGCACCTCTCGCTGGAGCGCATCGAGGCCGGGCTCGGCGTGGAG 
CTGACCCGTGGGCTGTTCGAGAACGCCGTCGACGGACTGCTGGAGCGCGTGCGCAACAGCGTCGCGCAACTG 
CTGGCCTCGGCCGGGGTCGACCCGGACCGGGTCGACACGGTGTTCTTCACCGGCGGTTCGAGCGGCATTCCG 
GCGCTGCGCCGGAGCGTCTCGGCGATGCTGCCCAACGCCCGTCATGTCGAGGGCAACCTGTTCGGCAGCATC 
GGCAGCGGCCTGGCCATCGAGGCGAAGAAGCGCTATGGCTGA