ViewGene
Locus Name:
GeneID:
Location:

GeneID:1370
TrivialName: PA14_17370
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17370
PAO1 Ortholog Locus:PA3631
Sequence Length:1227
Protein Length:408
Start: 1491907
Stop: 1490681
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07019.1|AE004783_4 (AE004783) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 403/408 (98%), Positives = 405/408 (99%)
Sequence:
ATGTCTGCCCTCAATGCGTTTCGCCAACGCTACCTGGTGAGGTTCTGGTCGCCGCTGCCGGCGCTGGTCGCC
CTCGGCGTCGCCTCCGCCTACTACTTCGCGCTCACCGGCACCTTCTGGGCGGTGACCGGCGAATTCACCCGC
TGGGGCGGCCACGTGCTGTCCTGGTTCGGCTACCAGCCACAGGACTGGAGCTACTTCAGGCTGATCGGCCTT
CAAGGCACGCCGCTGGACCGGATCGACGGAGTGATGATCATCGGCATGTTCCTCGGCGCCCTGTGCTGCGCC
CTCTGGGCCGGCAACGTCAGCCTGCGCTGGCCGACCAGCAAACGTCGCCTGCTGCAGGGCCTGGTCGGCGGT
ATCGTCGCCGGCTTCGGCGCACGCCTGGCGATGGGCTGCAACCTGGCGGCGTTCTTCACCGGTATCCCGATG
TTTTCCCTGCACGCCTGGGCCTTCATGTTCGCCACCGTCGGCGGCGCCTGGATCGGCGTGAAGATCAGCCTG
CTGCCGTTCCTGCGCACGCCGCTGAAAGTCGGCGCCACGGCCAGCGCCCTGCCCAGCGCCGAAAGCCTGGCC
CGACGCGCACGCCTGCAGGCCCGCCTGGGCCTGGCGGTGCTGGCGCTCGCCGCGCTGTTCGCCGCCTGGCGC
TTCGAGGTATCGCTGGTGCTGGGCATGGCCTGCCTGTTCGGCCTGCTGTTCGGCGGCCTGATCGAGCGCGCG
CAGATCTGCTTCACCAGCGCCGCACGGGACCTCTGGACCACAGGCCGGACCCGCGCCGCCTTCGGCATCCTG
CTCGGCATGGCGGCCGCCTGCATCGGTACCTTCGCCGTGATCCGCCTGGGCGTCGCGCCGAAGATCTTCTGG
ATGGGCCCGAATGCGATCATCGGCGGCATTCTCTTCGGCATCGGCATCGTCCTCGCCGGCGGTTGCGAGACC
GGCTGGATGTACCGCTCGATGGAGGGCCAGCTGCACTTCTGGGTGGTCGGCATCGGCAACGTCATCGGCGGA
ACCCTGGTGGCAATCTTTTGGGACCAGTTGGGTACCCGCCTCGCCCTGCCCTATCCCAAGCTCGACCTGCTG
GAAAGCTTCGGGCCCGGCAACGGCCTGCTGTTGACCTTCGCCGGCCTGGCCCTGTGCCTGTTGCTGGTGCAA
CTGAACGCCTCCCGATTCACCCGACCGCGGAAACCGAACCATGAGCCAGCCCGACAAACCGACCCTGTCGCT
TGA
Translation:
MSALNAFRQRYLVRFWSPLPALVALGVASAYYFALTGTFWAVTGEFTRWGGHVLSWFGYQPQDWSYFRLIGL
QGTPLDRIDGVMIIGMFLGALCCALWAGNVSLRWPTSKRRLLQGLVGGIVAGFGARLAMGCNLAAFFTGIPM
FSLHAWAFMFATVGGAWIGVKISLLPFLRTPLKVGATASALPSAESLARRARLQARLGLAVLALAALFAAWR
FEVSLVLGMACLFGLLFGGLIERAQICFTSAARDLWTTGRTRAAFGILLGMAAACIGTFAVIRLGVAPKIFW
MGPNAIIGGILFGIGIVLAGGCETGWMYRSMEGQLHFWVVGIGNVIGGTLVAIFWDQLGTRLALPYPKLDLL
ESFGPGNGLLLTFAGLALCLLLVQLNASRFTRPRKPNHEPARQTDPVA*
AnnotationID:1379GeneID:1370
AnnotatorUID: diggins
Modification Date/Time: 2005-04-20 20:08:40
Gene Name:
Confidence Code:3
GeneProduct:putative transport permease protein
Cell Localization:()
Synonyms:yedE
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2391
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM84122.1|AE013654_11 (AE013654) putative integral membrane protein [Yersinia pestis KIM]
          Length = 404

 Score =  483 bits (1243), Expect = e-136
 Identities = 232/389 (59%), Positives = 286/389 (73%), Gaps = 1/389 (0%)

>gb|AAG56944.1|AE005415_9 (AE005415) putative transport system permease protein [Escherichia
           coli O157:H7 EDL933]
          Length = 401

 Score =  454 bits (1168), Expect = e-127
 Identities = 216/390 (55%), Positives = 280/390 (71%), Gaps = 1/390 (0%)








 
Structural Features:
COG2391, Predicted transporter component
CD-Length = 198 residues,  96.5% aligned
Score = 65.4 bits (159), Expect = 3e-11
Identities = 67/246 (27%), Positives = 92/246 (37%), Gaps = 59/246 (23%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2743




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19888




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31912




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1370_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1370
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2494
                           PA3631_tr
                           translation of PA3631
                           408
                           98.77
                           99.26
                           0
                           2120.0
     

     
     
78945
                           gb|AAG07019.1|AE004783_4
                           (AE004783) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           408
                           98.77
                           99.26
                           0
                           2120.0
     

     
     
78946
                           emb|CAD85945.1|
                           (BX321863) conserved hypothetical protein [Nitrosomonas europaea ATCC 19718]
                           415
                           71.80
                           80.00
                           24
                           1597.0
     

     
     
78947
                           gb|AAM84122.1|AE013654_11
                           (AE013654) putative integral membrane protein [Yersinia pestis KIM]
                           419
                           56.32
                           69.45
                           26
                           1234.0
     

     
     
78948
                           emb|CAC89137.1|
                           (AJ414141) putative integral membrane protein [Yersinia pestis CO92]
                           419
                           56.32
                           69.45
                           26
                           1234.0
     

     






      

          
GC ORFID: 44372How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3631Glimmer Score: 

          
Start: 3462030Stop: 3463256

          
Length: 1227


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3631 translation of PA3631Homolog Bit Score 821.0

          
Other Homologs:  t_PA3631 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCTGCCCTCAATGCGTTTCGCCAACGCTACCTGGTGAGGTTCTGGTCGCCGCTGCCGGCGCTGGTCGCC 
CTCGGCGTCGCCTCCGCCTACTACTTCGCGCTCACCGGCACCTTCTGGGCGGTGACCGGCGAATTCACCCGC 
TGGGGCGGCCACGTGCTGTCCTGGTTCGGCTACCAGCCACAGGACTGGAGCTACTTCAGGCTGATCGGCCTT 
CAAGGCACGCCGCTGGACCGGATCGACGGAGTGATGATCATCGGCATGTTCCTCGGCGCCCTGTGCTGCGCC 
CTCTGGGCCGGCAACGTCAGCCTGCGCTGGCCGACCAGCAAACGTCGCCTGCTGCAGGGCCTGGTCGGCGGT 
ATCGTCGCCGGCTTCGGCGCACGCCTGGCGATGGGCTGCAACCTGGCGGCGTTCTTCACCGGTATCCCGATG 
TTTTCCCTGCACGCCTGGGCCTTCATGTTCGCCACCGTCGGCGGCGCCTGGATCGGCGTGAAGATCAGCCTG 
CTGCCGTTCCTGCGCACGCCGCTGAAAGTCGGCGCCACGGCCAGCGCCCTGCCCAGCGCCGAAAGCCTGGCC 
CGACGCGCACGCCTGCAGGCCCGCCTGGGCCTGGCGGTGCTGGCGCTCGCCGCGCTGTTCGCCGCCTGGCGC 
TTCGAGGTATCGCTGGTGCTGGGCATGGCCTGCCTGTTCGGCCTGCTGTTCGGCGGCCTGATCGAGCGCGCG 
CAGATCTGCTTCACCAGCGCCGCACGGGACCTCTGGACCACAGGCCGGACCCGCGCCGCCTTCGGCATCCTG 
CTCGGCATGGCGGCCGCCTGCATCGGTACCTTCGCCGTGATCCGCCTGGGCGTCGCGCCGAAGATCTTCTGG 
ATGGGCCCGAATGCGATCATCGGCGGCATTCTCTTCGGCATCGGCATCGTCCTCGCCGGCGGTTGCGAGACC 
GGCTGGATGTACCGCTCGATGGAGGGCCAGCTGCACTTCTGGGTGGTCGGCATCGGCAACGTCATCGGCGGA 
ACCCTGGTGGCAATCTTTTGGGACCAGTTGGGTACCCGCCTCGCCCTGCCCTATCCCAAGCTCGACCTGCTG 
GAAAGCTTCGGGCCCGGCAACGGCCTGCTGTTGACCTTCGCCGGCCTGGCCCTGTGCCTGTTGCTGGTGCAA 
CTGAACGCCTCCCGATTCACCCGACCGCGGAAACCGAACCATGAGCCAGCCCGACAAACCGACCCTGTCGCT 
TGA