ViewGene
Locus Name:
GeneID:
Location:

GeneID:137
TrivialName: PA14_53970
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53970
PAO1 Ortholog Locus:PA0794
Sequence Length:2607
Protein Length:868
Start: 4784532
Stop: 4787138
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04183.1|AE004514_6 (AE004514) probable aconitate hydratase [Pseudomonas aeruginosa PAO1]
Identities = 867/868 (99%), Positives = 868/868 (100%)
Sequence:
ATGAACAGCGCACACCGCAAACCGCTCCCCGGCACCCGCCTGGACTACTTCGACGCCCGCGAGGCGGTCGAG
GCGATCCAGCCCGGCGCCTACGCCAAGCTGCCCTATACCTCCCGCGTGCTCGCCGAGAACCTGGTGCGCCGT
TGCGACCCGGCGACCCTGGAGGCTTCGCTGCGCCAACTGGTCGAGCGCAAGCGCGACCTCGACTTCCCCTGG
TACCCGGCGCGGGTGGTCTGCCATGACATCCTCGGGCAGACCGCGCTGGTCGACCTCGCCGGCCTGCGCGAC
GCCATCGCCGACAAGGGCGGCGACCCGGCCCAGGTCAACCCGGTGGTGCCGGTGCAACTGATCGTCGACCAC
TCGCTGGCGGTGGAATGCGGCGGCTACGACCCCGAGGCCTTCGCCAAGAACCGCGCCATCGAGGACCGCCGC
AACGAGGACCGCTTCCACTTCATCGACTGGACCAAGCAGGCCTTCCGCAACGTCGACGTGATCCCGCCGGGC
AACGGCATCATGCACCAGATCAACCTGGAGAAAATGTCGCCGGTGATCCAGGCGCGCGACGGCGTGGCCTTC
CCCGATACCTGCGTGGGCACCGACAGCCATACCCCGCACGTCGACGCCCTGGGCGTGATCGCCATCGGCGTC
GGCGGCCTGGAAGCGGAAAACGTGATGCTCGGCCGCGCCTCCTGGATGCGCCTGCCGGACATCGTCGGCGTC
GAGCTGAGCGGCCGTCGCCAGCCGGGCATCACCGCCACCGACGTGGTGCTGGCCCTGACCGAGTTCCTGCGC
AAGCAGAAGGTGGTCGGCGCCTACCTGGAGTTCTACGGCGAAGGCGCCTCCAGCCTGACCCTCGGCGACCGC
GCGACCATCTCCAACATGGCTCCGGAATACGGCGCCACTGCGGCGATGTTCGCCATCGACCAGCAGACCATC
GACTACCTGCGCCTCACCGGCCGCGACGACGAGCAGGTCGCCCTGGTGGAGGCCTATGCGCGCACCGCCGGA
CTCTGGGCCGACAGCCTGGTCGACGCCGAGTACGAGCGGGTACTGAAGTTCGACCTGTCCAGCGTGGTGCGC
AACATGGCCGGCCCGTCCAATCCGCACGCCAGGGTCGCCACCAGCGAACTGGCGGCGAAAGGCATCGCCGGC
AACCTCGAGCGGGCCCGCGCCGAGGAAGCCGAGGGCCTGATGCCGGACGGCGCGGTGATCATCGCCGCGATC
ACCAGTTGCACCAACACCAGCAACCCGCGCAACGTGATCGCCGCCGGCCTGCTGGCGCGCAACGCCGACCGC
CTCGGCCTGGTCCGCAAGCCATGGGTGAAGACCTCGCTGGCACCCGGCTCCAAGGTGGTCACCGAATACCTG
CGCGAAGCCGGCCTGCTGCCGCACCTGGAAGCCCTCGGCTTCGGCGTGGTGGCCTACGCCTGCACGTCCTGC
AACGGCATGTCCGGCGCCCTCGACCCGGCGATCCAGCAGGAGATCGTCGAGCGCGACCTGTACGCCACCGCG
GTGCTCTCCGGCAACCGCAACTTCGACGGGCGCATCCACCCCTACGCCAAGCAGGCCTTCCTCGCCTCGCCG
CCGCTGGTGGTGGCCTACGCCATCGCCGGGACCATCCGCTTCGACATCGAGCGCGACGTGCTCGGCGTGGTG
GACGGCAAGGAGATCCGCCTGAAGGACCTCTGGCCGAGCGACGAGGAGATCGACGCAGTGGTCAGGGCGGCG
GTGAAGCCCGAGCAGTTCCGCCAGGTCTACATCCCGATGTTCGACATCACCCACGGCGAGCGCGAGAAGGTC
GACCCGCTCTACGCCTGGCGCCCGACGAGCACCTACATCCGCCGCCCGCCGTACTGGGAAGGCGCCCTCGCC
GGCGAACGCACCCTGCGCGGCATGCGCCCGCTGGCGGTGCTGCCGGACAACATCACCACCGACCACCTGTCG
CCGTCCAACGCGATCCTCGCCGACAGCGCGGCGGGCGAGTACCTGGCGAAAATGGGCCTGCCCGAGGAGGAC
TTCAACTCCTACGCCACCCACCGCGGCGACCACCTCACCGCGCAACGCGCGACCTTCGCCAACCCGAAGCTG
TTCAACGAGATGGTGCGCAACGCCGACGGCAGCGTGAAGCAGGGTTCGCTGGCGCGGGTCGAGCCGGAAGGC
AAGGTGATGCGCATGTGGGAAGCCATCGAGACCTACATGGAGCGCAAGCAGCCGCTGATCATCGTCGCCGGC
GCCGACTACGGGCAGGGTTCTTCGCGCGACTGGGCGGCCAAGGGCGTGCGCCTGGCCGGGGTGGAGGCGATC
GTCGCCGAGGGCTTCGAGCGCATCCACCGCACCAACCTGATCGGCATGGGCGTGCTGCCGCTGGAGTTCAAG
CCGGGCACCACCCGCCTGACCCTGGGGATCGACGGCAGCGAGACCTTCGACGTGCTCGGCGCTCGCCGGCCG
CGCGCCGACCTGACCCTGGTCATCCACCGGCGCGACGGGGAGCGGCTCGAAGTGCCGGTGACCTGCCGCCTG
GACAGCGACGAGGAAGTCTCCATCTACGAAGCCGGCGGCGTACTGCAACGCTTCGCCCAGGACTTCCTGGAG
GCGGCCGGCGCCTGA
Translation:
MNSAHRKPLPGTRLDYFDAREAVEAIQPGAYAKLPYTSRVLAENLVRRCDPATLEASLRQLVERKRDLDFPW
YPARVVCHDILGQTALVDLAGLRDAIADKGGDPAQVNPVVPVQLIVDHSLAVECGGYDPEAFAKNRAIEDRR
NEDRFHFIDWTKQAFRNVDVIPPGNGIMHQINLEKMSPVIQARDGVAFPDTCVGTDSHTPHVDALGVIAIGV
GGLEAENVMLGRASWMRLPDIVGVELSGRRQPGITATDVVLALTEFLRKQKVVGAYLEFYGEGASSLTLGDR
ATISNMAPEYGATAAMFAIDQQTIDYLRLTGRDDEQVALVEAYARTAGLWADSLVDAEYERVLKFDLSSVVR
NMAGPSNPHARVATSELAAKGIAGNLERARAEEAEGLMPDGAVIIAAITSCTNTSNPRNVIAAGLLARNADR
LGLVRKPWVKTSLAPGSKVVTEYLREAGLLPHLEALGFGVVAYACTSCNGMSGALDPAIQQEIVERDLYATA
VLSGNRNFDGRIHPYAKQAFLASPPLVVAYAIAGTIRFDIERDVLGVVDGKEIRLKDLWPSDEEIDAVVRAA
VKPEQFRQVYIPMFDITHGEREKVDPLYAWRPTSTYIRRPPYWEGALAGERTLRGMRPLAVLPDNITTDHLS
PSNAILADSAAGEYLAKMGLPEEDFNSYATHRGDHLTAQRATFANPKLFNEMVRNADGSVKQGSLARVEPEG
KVMRMWEAIETYMERKQPLIIVAGADYGQGSSRDWAAKGVRLAGVEAIVAEGFERIHRTNLIGMGVLPLEFK
PGTTRLTLGIDGSETFDVLGARRPRADLTLVIHRRDGERLEVPVTCRLDSDEEVSIYEAGGVLQRFAQDFLE
AAGA*
AnnotationID:147GeneID:137
AnnotatorUID: danlee
Modification Date/Time: 2004-04-16 16:04:19
Gene Name:
Confidence Code:3
GeneProduct:probable aconitate hydratase
Cell Localization:()
Synonyms:PA0794
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:probable aconitase
Functional Category Confidence Code:5
COGs:COG1048, KOG0452
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1048, AcnA, Aconitase A [Energy production and conversion]. Score: 1132, 0.0
KOG0452, RNA-binding translational regulator IRP (aconitase superfamily). Score: 815, 0.0






   
Genomic Context:






   
Comment:


















    ReferenceID:277




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17419




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:137
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
250
                           PA0794_tr
                           translation of PA0794
                           868
                           99.88
                           99.99
                           0
                           4464.0
     

     
     
17449
                           gb|AAG04183.1|AE004514_6
                           (AE004514) probable aconitate hydratase [Pseudomonas aeruginosa PAO1]
                           868
                           99.88
                           99.99
                           0
                           4464.0
     

     
     
17450
                           gb|AAN67949.1|AE016427_4
                           (AE016782) aconitate hydratase, putative [Pseudomonas putida KT2440]
                           868
                           86.86
                           92.28
                           6
                           3905.0
     

     
     
17451
                           gb|AAL03990.1|AF325554_3
                           (AF325554) probable methyl-cis-aconitic acid hydratase [Ralstonia eutropha]
                           871
                           85.41
                           92.07
                           5
                           3859.0
     

     
     
17453
                           emb|CAD17271.1|
                           (AL646076) PROBABLE ACONITATE HYDRATASE 1 TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
                           871
                           85.07
                           90.92
                           9
                           3824.0
     

     






      

          
GC ORFID: 43139How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0794Glimmer Score: 

          
Start: 169375Stop: 166769

          
Length: 2607


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0794 translation of PA0794Homolog Bit Score 1724.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1064 (ORF: BLASTX 1482.0), t_PA0794 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACAGCGCACACCGCAAACCGCTCCCCGGCACCCGCCTGGACTACTTCGACGCCCGCGAGGCGGTCGAG 
GCGATCCAGCCCGGCGCCTACGCCAAGCTGCCCTATACCTCCCGCGTGCTCGCCGAGAACCTGGTGCGCCGT 
TGCGACCCGGCGACCCTGGAGGCTTCGCTGCGCCAACTGGTCGAGCGCAAGCGCGACCTCGACTTCCCCTGG 
TACCCGGCGCGGGTGGTCTGCCATGACATCCTCGGGCAGACCGCGCTGGTCGACCTCGCCGGCCTGCGCGAC 
GCCATCGCCGACAAGGGCGGCGACCCGGCCCAGGTCAACCCGGTGGTGCCGGTGCAACTGATCGTCGACCAC 
TCGCTGGCGGTGGAATGCGGCGGCTACGACCCCGAGGCCTTCGCCAAGAACCGCGCCATCGAGGACCGCCGC 
AACGAGGACCGCTTCCACTTCATCGACTGGACCAAGCAGGCCTTCCGCAACGTCGACGTGATCCCGCCGGGC 
AACGGCATCATGCACCAGATCAACCTGGAGAAAATGTCGCCGGTGATCCAGGCGCGCGACGGCGTGGCCTTC 
CCCGATACCTGCGTGGGCACCGACAGCCATACCCCGCACGTCGACGCCCTGGGCGTGATCGCCATCGGCGTC 
GGCGGCCTGGAAGCGGAAAACGTGATGCTCGGCCGCGCCTCCTGGATGCGCCTGCCGGACATCGTCGGCGTC 
GAGCTGAGCGGCCGTCGCCAGCCGGGCATCACCGCCACCGACGTGGTGCTGGCCCTGACCGAGTTCCTGCGC 
AAGCAGAAGGTGGTCGGCGCCTACCTGGAGTTCTACGGCGAAGGCGCCTCCAGCCTGACCCTCGGCGACCGC 
GCGACCATCTCCAACATGGCTCCGGAATACGGCGCCACTGCGGCGATGTTCGCCATCGACCAGCAGACCATC 
GACTACCTGCGCCTCACCGGCCGCGACGACGAGCAGGTCGCCCTGGTGGAGGCCTATGCGCGCACCGCCGGA 
CTCTGGGCCGACAGCCTGGTCGACGCCGAGTACGAGCGGGTACTGAAGTTCGACCTGTCCAGCGTGGTGCGC 
AACATGGCCGGCCCGTCCAATCCGCACGCCAGGGTCGCCACCAGCGAACTGGCGGCGAAAGGCATCGCCGGC 
AACCTCGAGCGGGCCCGCGCCGAGGAAGCCGAGGGCCTGATGCCGGACGGCGCGGTGATCATCGCCGCGATC 
ACCAGTTGCACCAACACCAGCAACCCGCGCAACGTGATCGCCGCCGGCCTGCTGGCGCGCAACGCCGACCGC 
CTCGGCCTGGTCCGCAAGCCATGGGTGAAGACCTCGCTGGCACCCGGCTCCAAGGTGGTCACCGAATACCTG 
CGCGAAGCCGGCCTGCTGCCGCACCTGGAAGCCCTCGGCTTCGGCGTGGTGGCCTACGCCTGCACGTCCTGC 
AACGGCATGTCCGGCGCCCTCGACCCGGCGATCCAGCAGGAGATCGTCGAGCGCGACCTGTACGCCACCGCG 
GTGCTCTCCGGCAACCGCAACTTCGACGGGCGCATCCACCCCTACGCCAAGCAGGCCTTCCTCGCCTCGCCG 
CCGCTGGTGGTGGCCTACGCCATCGCCGGGACCATCCGCTTCGACATCGAGCGCGACGTGCTCGGCGTGGTG 
GACGGCAAGGAGATCCGCCTGAAGGACCTCTGGCCGAGCGACGAGGAGATCGACGCAGTGGTCAGGGCGGCG 
GTGAAGCCCGAGCAGTTCCGCCAGGTCTACATCCCGATGTTCGACATCACCCACGGCGAGCGCGAGAAGGTC 
GACCCGCTCTACGCCTGGCGCCCGACGAGCACCTACATCCGCCGCCCGCCGTACTGGGAAGGCGCCCTCGCC 
GGCGAACGCACCCTGCGCGGCATGCGCCCGCTGGCGGTGCTGCCGGACAACATCACCACCGACCACCTGTCG 
CCGTCCAACGCGATCCTCGCCGACAGCGCGGCGGGCGAGTACCTGGCGAAAATGGGCCTGCCCGAGGAGGAC 
TTCAACTCCTACGCCACCCACCGCGGCGACCACCTCACCGCGCAACGCGCGACCTTCGCCAACCCGAAGCTG 
TTCAACGAGATGGTGCGCAACGCCGACGGCAGCGTGAAGCAGGGTTCGCTGGCGCGGGTCGAGCCGGAAGGC 
AAGGTGATGCGCATGTGGGAAGCCATCGAGACCTACATGGAGCGCAAGCAGCCGCTGATCATCGTCGCCGGC 
GCCGACTACGGGCAGGGTTCTTCGCGCGACTGGGCGGCCAAGGGCGTGCGCCTGGCCGGGGTGGAGGCGATC 
GTCGCCGAGGGCTTCGAGCGCATCCACCGCACCAACCTGATCGGCATGGGCGTGCTGCCGCTGGAGTTCAAG 
CCGGGCACCACCCGCCTGACCCTGGGGATCGACGGCAGCGAGACCTTCGACGTGCTCGGCGCTCGCCGGCCG 
CGCGCCGACCTGACCCTGGTCATCCACCGGCGCGACGGGGAGCGGCTCGAAGTGCCGGTGACCTGCCGCCTG 
GACAGCGACGAGGAAGTCTCCATCTACGAAGCCGGCGGCGTACTGCAACGCTTCGCCCAGGACTTCCTGGAG 
GCGGCCGGCGCCTGA