ViewGene
Locus Name:
GeneID:
Location:

GeneID:1369
TrivialName: PA14_65560
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_65560
PAO1 Ortholog Locus:PA4960
Sequence Length:1290
Protein Length:429
Start: 5840334
Stop: 5839045
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08345.1|AE004909_1 (AE004909) probable phosphoserine phosphatase [Pseudomonas aeruginosa PAO1]
Identities = 429/429 (100%), Positives = 429/429 (100%)
Sequence:
ATGCCCGGCTCTGCGTCTCTCGGGTGTGCGGGAAAGCGGGTAGAATGGCGTCTTTTACCTGGCGGAGCTTAC
GCCTTGCGCGAAATTGTCCTGATCAACATCACCGGGGAAGACCGCCCCGGTCTCACCGCGGCCATCACCGGC
GTACTGGCCCAGGGCGGGGTGAACATCCTCGACATCGGCCAGGCGGTGATCCACGACACCCTGTCGTTCGGC
ATCCTGGTGGAAATCCCGGATACCGAAGCCGGTTCCTCGGTCCTCAAGGACGTGCTGTTCACCGCCTACAAG
CTGGACCAGCAGGTGCGCTTCACCCCGGTCTCGGAAGAGGACTACCGGCAATGGGTCGACGGCCAGGGCAAG
GCGCGGCACATCGTGACCCTGCTCACCCGCCGGGTGACTGCCGAGCAACTGCAGAGGGTCAGCTCGATCACC
GCCAAGTACGCGCTGAACATCGACCACATCGACCGTCTCTCCGGGCGCATGCCGCTGGACATGCCCGCCGAC
CAGGGCAAGGGCTGCATCGAGTTCTCGGTACGCGGCGAACCGGCCGATCCGGCGGCGCTGCGTGCGGAATTC
CTCAGCGTCGCCCAGGAATTGAACGTCGACATCGCTTTCCAGCAGGACAGCGTGTTCCGCCGCAATCGCCGG
CTGGCGGTGTTCGACATGGATTCGACGCTGATCGAGGCGGAAGTCATCGACGAACTGGCCAAGGCCGCCGGC
GTCGGCGAGAAGGTCGCCGCGATCACCGAACGGGCGATGCGCGGTGAACTGGACTTCCGCGCCAGCTTCAAG
GAGCGCCTGGCGCTGCTGCAGGGACTGTCGGAAGACGTACTGGAGGAGATCGGCGCCTCGCTGCGTCTGACC
GAGGGTGCTGAAACCCTGTTCGCCGAACTCAAGCGCCTGGGTTACAAGACCGCCATCCTGTCCGGCGGCTTC
ACCTATTTCGCCCGTCAATTGCAGGCGAAGCTGGGGATCGACTACGTGTTCGCCAACGAGTTGCAGATCGTC
GACGGCAAGGTCACCGGGGTGGCGGTCGAGCCGATCGTCGATGCCCAGCGCAAGGCCGACCTGCTGCGCGAA
CTGGCGGCGAAGGAAGGCCTGAGCCTGGAGCAGACCATTGCCGTCGGCGACGGCGCCAACGACCTGCCGATG
CTCGGCCTGGCCGGCCTGGGCGTGGCGTTCCGCGCCAAGCCGCTGGTCAAGCAGTCGGCCAAGCAGGCGATC
TCGACCCTGGGCCTGGACGGCATCCTCTACCTGCTCGGCTACCGCGACCGCGAAGGGCGAGCCTGA
Translation:
MPGSASLGCAGKRVEWRLLPGGAYALREIVLINITGEDRPGLTAAITGVLAQGGVNILDIGQAVIHDTLSFG
ILVEIPDTEAGSSVLKDVLFTAYKLDQQVRFTPVSEEDYRQWVDGQGKARHIVTLLTRRVTAEQLQRVSSIT
AKYALNIDHIDRLSGRMPLDMPADQGKGCIEFSVRGEPADPAALRAEFLSVAQELNVDIAFQQDSVFRRNRR
LAVFDMDSTLIEAEVIDELAKAAGVGEKVAAITERAMRGELDFRASFKERLALLQGLSEDVLEEIGASLRLT
EGAETLFAELKRLGYKTAILSGGFTYFARQLQAKLGIDYVFANELQIVDGKVTGVAVEPIVDAQRKADLLRE
LAAKEGLSLEQTIAVGDGANDLPMLGLAGLGVAFRAKPLVKQSAKQAISTLGLDGILYLLGYRDREGRA*
AnnotationID:1378GeneID:1369
AnnotatorUID: diggins
Modification Date/Time: 2005-04-26 08:08:32
Gene Name:serB
Confidence Code:2
GeneProduct:phosphoserine phosphatase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0560
Secondary Functional Category(ies):signal transduction mechanism
EC Number:3.1.3.3
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58385.1| (AE016873) ACT domain protein/phosphoserine phosphatase SerB
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 418

 Score =  697 bits (1799), Expect = 0.0
 Identities = 363/415 (87%), Positives = 388/415 (93%)

>gb|AAO50077.1| (AY210848) phosphoserine phosphatase [Pseudomonas syringae pv.
           phaseolicola]
          Length = 384

 Score =  610 bits (1573), Expect = e-174
 Identities = 316/368 (85%), Positives = 342/368 (92%)

>gb|AAM71421.1| (AE012797) phosphoserine phosphatase [Chlorobium tepidum TLS]
          Length = 407

 Score =  493 bits (1270), Expect = e-139
 Identities = 246/406 (60%), Positives = 317/406 (78%), Gaps = 2/406 (0%)






 
Structural Features:
COG0560, SerB, Phosphoserine phosphatase [Amino acid transport and metabolism]
CD-Length = 212 residues,  99.5% aligned
Score =  224 bits (572), Expect = 2e-59
Identities = 123/211 (58%), Positives = 150/211 (71%), Gaps = 1/211 (0%)
          






   
Genomic Context:






   
Comment:


















    ReferenceID:2741




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19886




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35024




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1369_cdd.html


    		




 
URL:

















    ReferenceID:35888




  
Author/Investigator(s):
        Neuwald AF, Stauffer GV.





  
Title:
        DNA sequence and characterization of the Escherichia coli serB gene.




  
PubMed:
        2997734


MedLine:
        




    
Source:
Nucleic Acids Res. 1985 Oct 11;13(19):7025-39.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2997734









           
Homologs By Global Alignment 

           

       



     
Gene ID:1369
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2493
                           PA4960_tr
                           translation of PA4960
                           429
                           99.99
                           99.99
                           0
                           2123.0
     

     
     
78876
                           gb|AAG08345.1|AE004909_1
                           (AE004909) probable phosphoserine phosphatase [Pseudomonas aeruginosa PAO1]
                           429
                           99.99
                           99.99
                           0
                           2123.0
     

     
     
78877
                           gb|AAO58385.1|
                           (AE016873) ACT domain protein/phosphoserine phosphatase SerB [Pseudomonas syringae pv. tomato str. DC3000]
                           429
                           84.61
                           90.44
                           11
                           1794.0
     

     
     
78879
                           gb|AAN70476.1|AE016689_4
                           (AE016792) phosphoserine phosphatase [Pseudomonas putida KT2440]
                           429
                           72.96
                           84.84
                           14
                           1566.0
     

     
     
78878
                           gb|AAO50077.1|
                           (AY210848) phosphoserine phosphatase [Pseudomonas syringae pv. phaseolicola] [Pseudomonas savastanoi pv. phaseolicola]
                           438
                           72.37
                           78.53
                           63
                           1572.0
     

     






      

          
GC ORFID: 44371How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4960Glimmer Score: 

          
Start: 5104015Stop: 5102726

          
Length: 1290


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4960 translation of PA4960Homolog Bit Score 822.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3417 (ORF: BLASTX 693.0), t_PA4960 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCGGCTCTGCGTCTCTCGGGTGTGCGGGAAAGCGGGTAGAATGGCGTCTTTTACCTGGCGGAGCTTAC 
GCCTTGCGCGAAATTGTCCTGATCAACATCACCGGGGAAGACCGCCCCGGTCTCACCGCGGCCATCACCGGC 
GTACTGGCCCAGGGCGGGGTGAACATCCTCGACATCGGCCAGGCGGTGATCCACGACACCCTGTCGTTCGGC 
ATCCTGGTGGAAATCCCGGATACCGAAGCCGGTTCCTCGGTCCTCAAGGACGTGCTGTTCACCGCCTACAAG 
CTGGACCAGCAGGTGCGCTTCACCCCGGTCTCGGAAGAGGACTACCGGCAATGGGTCGACGGCCAGGGCAAG 
GCGCGGCACATCGTGACCCTGCTCACCCGCCGGGTGACTGCCGAGCAACTGCAGAGGGTCAGCTCGATCACC 
GCCAAGTACGCGCTGAACATCGACCACATCGACCGTCTCTCCGGGCGCATGCCGCTGGACATGCCCGCCGAC 
CAGGGCAAGGGCTGCATCGAGTTCTCGGTACGCGGCGAACCGGCCGATCCGGCGGCGCTGCGTGCGGAATTC 
CTCAGCGTCGCCCAGGAATTGAACGTCGACATCGCTTTCCAGCAGGACAGCGTGTTCCGCCGCAATCGCCGG 
CTGGCGGTGTTCGACATGGATTCGACGCTGATCGAGGCGGAAGTCATCGACGAACTGGCCAAGGCCGCCGGC 
GTCGGCGAGAAGGTCGCCGCGATCACCGAACGGGCGATGCGCGGTGAACTGGACTTCCGCGCCAGCTTCAAG 
GAGCGCCTGGCGCTGCTGCAGGGACTGTCGGAAGACGTACTGGAGGAGATCGGCGCCTCGCTGCGTCTGACC 
GAGGGTGCTGAAACCCTGTTCGCCGAACTCAAGCGCCTGGGTTACAAGACCGCCATCCTGTCCGGCGGCTTC 
ACCTATTTCGCCCGTCAATTGCAGGCGAAGCTGGGGATCGACTACGTGTTCGCCAACGAGTTGCAGATCGTC 
GACGGCAAGGTCACCGGGGTGGCGGTCGAGCCGATCGTCGATGCCCAGCGCAAGGCCGACCTGCTGCGCGAA 
CTGGCGGCGAAGGAAGGCCTGAGCCTGGAGCAGACCATTGCCGTCGGCGACGGCGCCAACGACCTGCCGATG 
CTCGGCCTGGCCGGCCTGGGCGTGGCGTTCCGCGCCAAGCCGCTGGTCAAGCAGTCGGCCAAGCAGGCGATC 
TCGACCCTGGGCCTGGACGGCATCCTCTACCTGCTCGGCTACCGCGACCGCGAAGGGCGAGCCTGA