ViewGene
Locus Name:
GeneID:
Location:

GeneID:1366
TrivialName: PA14_45830
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45830
PAO1 Ortholog Locus:PA1441
Sequence Length:1284
Protein Length:427
Start: 4073733
Stop: 4072450
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04830.1|AE004574_1 (AE004574) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 420/427 (98%), Positives = 423/427 (99%)
Sequence:
ATGGCCGTCGCCCCTGGTGTGTTGTTGCCGCCGACGCCTGATGTAAAGCCCAAGGCCGCTGCGCCGAAGAGC
CAGCAGAAAACGCCTGAGCCCAGTAACGACAAGACTTCCAGCTTCTCCGACATGTATGCCAAGGAGACCGCG
AAGAAGCCCGCCGAGCGCGCCGACGGTCCCGCGAAGGGTTCGCGGGACAAGCCACGGGACGCCGGCAAGGAC
GCCGCCGAAGCGCAGCCGACGGATGCCGTCAGGCAGCCGGCCGTTGCCGAAGACGGCAAGCCTTTGCCGGCC
GACGGCCAGGCCAAGGCCGACGGCGAAGATAAAGTCGAAACGCCGGTCGATCCGCTGCAATTGCTCGGCCTC
GGCGGCGCCGTGCCGATGCTCGACGAGAATACCCAGGCGACTTTGCTGCCGCCGGCCGTGCCGACGGCTAGC
AGTGCTCCGGCCAGCCTGACCGAAGCCAGCAGCGACCCGACCCTGGTCAAGCTCAACGGCGTTCCGGCAGTG
AACATGGCCTTGGAGCAGGGTGCCCAGGACGCCGCGCAGGCGGCGAAAGGCGGGCCGGCGAAGAGCGCCGAT
CCGCGCCAGGCGAACCTCGGCGATGCCCTTGCCAGCCTGACTTCCGACTCCTTGCCCAAGGCCGTCGACGGC
AAGGCGCTCGAGGCCCAGTTGCAGCAGACCGCCGAGCCGGCCATCGCCAGCGCCGCCTCCGAGAGCCTGCTG
GAGAGCAAGGCGGAGCCGCGCGGCGAGCCTTTCGCGGCCAAGCTCAACGGGCTGACCCAGGCCATGGCGCAG
CAGGCCCTGACCAACCGTCCGGTGAACGGTACGGTGCCCGGCCAGCCGGTGGCGATACAGCAGAACGGCTGG
AGCGAGGCGGTGGTGGACCGGGTGATGTGGATGTCCAGCCAGAACCTGAAGTCGGCGGAGATCCAGCTCGAC
CCCGCCGAGCTGGGACGCCTGGACGTGCGCATCCACATGACCGCCGACCAGACCCAGGTGACCTTCGCCAGT
CCCAACGCCGGCGTTCGCGACGCCCTGGAAAGCCAGATGCACCGGCTGCGCGACATGTTCAGCCAGCAGGGC
ATGAACCAGCTCGACGTGAACGTCTCCGACCAGTCGTTGGCGCGGGGCTGGCAGGGCCAGCAGCAGGGCGAG
GGCGGATCGGCGCGCGGACGCGGCTTTGCCGGCGAGGCCTCGGGCGATGAGGAAACCCTCGCCGGAGTCAGC
GAGATCCGCAGCCGGCCGGGTGCGTCGGCGGCGCGCGGTCTGGTCGACTACTACGCCTGA
Translation:
MAVAPGVLLPPTPDVKPKAAAPKSQQKTPEPSNDKTSSFSDMYAKETAKKPAERADGPAKGSRDKPRDAGKD
AAEAQPTDAVRQPAVAEDGKPLPADGQAKADGEDKVETPVDPLQLLGLGGAVPMLDENTQATLLPPAVPTAS
SAPASLTEASSDPTLVKLNGVPAVNMALEQGAQDAAQAAKGGPAKSADPRQANLGDALASLTSDSLPKAVDG
KALEAQLQQTAEPAIASAASESLLESKAEPRGEPFAAKLNGLTQAMAQQALTNRPVNGTVPGQPVAIQQNGW
SEAVVDRVMWMSSQNLKSAEIQLDPAELGRLDVRIHMTADQTQVTFASPNAGVRDALESQMHRLRDMFSQQG
MNQLDVNVSDQSLARGWQGQQQGEGGSARGRGFAGEASGDEETLAGVSEIRSRPGASAARGLVDYYA*
AnnotationID:1375GeneID:1366
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 09:09:35
Gene Name:
Confidence Code:3
GeneProduct:putative flagellar hook-length control protein FliK
Cell Localization:()
Synonyms:PA1441
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3144,pfam02120
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55484.1| (AE016862) flagellar hook-length control protein FliK [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 474

 Score =  221 bits (563), Expect = 7e-57
 Identities = 171/483 (35%), Positives = 244/483 (50%), Gaps = 65/483 (13%)

>gb|AAN69939.1|AE016632_10 (AE016790) flagellar hook-length control protein FliK [Pseudomonas
           putida KT2440]
          Length = 421

 Score =  207 bits (527), Expect = 1e-52
 Identities = 161/446 (36%), Positives = 229/446 (51%), Gaps = 44/446 (9%)








 
Structural Features:
COG3144, FliK, Flagellar hook-length control protein 
[Cell motility and secretion]
CD-Length = 417 residues, 100.0% aligned
Score =  233 bits (596), Expect = 3e-62
Identities = 120/429 (27%), Positives = 156/429 (36%), Gaps = 14/429 (3%)

pfam02120, Flg_hook, Flagellar hook-length control protein.
CD-Length = 144 residues, 100.0% aligned
Score =  131 bits (330), Expect = 2e-31
Identities = 56/144 (38%), Positives = 77/144 (53%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2735




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19880




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37387




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1366_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1366
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2486
                           PA1441_tr
                           translation of PA1441
                           427
                           98.36
                           99.06
                           0
                           2123.0
     

     
     
78505
                           gb|AAG04830.1|AE004574_1
                           (AE004574) hypothetical protein PA1441 [Pseudomonas aeruginosa PAO1]
                           427
                           98.36
                           99.06
                           0
                           2123.0
     

     






      

          
GC ORFID: 44368How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1441Glimmer Score: 

          
Start: 880176Stop: 881459

          
Length: 1284


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1441 translation of PA1441Homolog Bit Score 822.0

          
Other Homologs:  t_PA1441 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCGTCGCCCCTGGTGTGTTGTTGCCGCCGACGCCTGATGTAAAGCCCAAGGCCGCTGCGCCGAAGAGC 
CAGCAGAAAACGCCTGAGCCCAGTAACGACAAGACTTCCAGCTTCTCCGACATGTATGCCAAGGAGACCGCG 
AAGAAGCCCGCCGAGCGCGCCGACGGTCCCGCGAAGGGTTCGCGGGACAAGCCACGGGACGCCGGCAAGGAC 
GCCGCCGAAGCGCAGCCGACGGATGCCGTCAGGCAGCCGGCCGTTGCCGAAGACGGCAAGCCTTTGCCGGCC 
GACGGCCAGGCCAAGGCCGACGGCGAAGATAAAGTCGAAACGCCGGTCGATCCGCTGCAATTGCTCGGCCTC 
GGCGGCGCCGTGCCGATGCTCGACGAGAATACCCAGGCGACTTTGCTGCCGCCGGCCGTGCCGACGGCTAGC 
AGTGCTCCGGCCAGCCTGACCGAAGCCAGCAGCGACCCGACCCTGGTCAAGCTCAACGGCGTTCCGGCAGTG 
AACATGGCCTTGGAGCAGGGTGCCCAGGACGCCGCGCAGGCGGCGAAAGGCGGGCCGGCGAAGAGCGCCGAT 
CCGCGCCAGGCGAACCTCGGCGATGCCCTTGCCAGCCTGACTTCCGACTCCTTGCCCAAGGCCGTCGACGGC 
AAGGCGCTCGAGGCCCAGTTGCAGCAGACCGCCGAGCCGGCCATCGCCAGCGCCGCCTCCGAGAGCCTGCTG 
GAGAGCAAGGCGGAGCCGCGCGGCGAGCCTTTCGCGGCCAAGCTCAACGGGCTGACCCAGGCCATGGCGCAG 
CAGGCCCTGACCAACCGTCCGGTGAACGGTACGGTGCCCGGCCAGCCGGTGGCGATACAGCAGAACGGCTGG 
AGCGAGGCGGTGGTGGACCGGGTGATGTGGATGTCCAGCCAGAACCTGAAGTCGGCGGAGATCCAGCTCGAC 
CCCGCCGAGCTGGGACGCCTGGACGTGCGCATCCACATGACCGCCGACCAGACCCAGGTGACCTTCGCCAGT 
CCCAACGCCGGCGTTCGCGACGCCCTGGAAAGCCAGATGCACCGGCTGCGCGACATGTTCAGCCAGCAGGGC 
ATGAACCAGCTCGACGTGAACGTCTCCGACCAGTCGTTGGCGCGGGGCTGGCAGGGCCAGCAGCAGGGCGAG 
GGCGGATCGGCGCGCGGACGCGGCTTTGCCGGCGAGGCCTCGGGCGATGAGGAAACCCTCGCCGGAGTCAGC 
GAGATCCGCAGCCGGCCGGGTGCGTCGGCGGCGCGCGGTCTGGTCGACTACTACGCCTGA