ViewGene
Locus Name:
GeneID:
Location:

GeneID:1365
TrivialName: PA14_51960
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51960
PAO1 Ortholog Locus:PA0951
Sequence Length:1236
Protein Length:411
Start: 4613884
Stop: 4612649
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04340.1|AE004529_6 (AE004529) probable ribonuclease [Pseudomonas aeruginosa PAO1]
Identities = 408/411 (99%), Positives = 410/411 (99%)
Sequence:
ATGCGCGAACATTTCAACGATGGGGTCGAGTTCGCTCGCTTCCTCGCTCATCGCTTCGTCACCGACAAGGCT
CCCAACAGCGCGGCGGCGCTGACCTACACCACGTTGTTCGCGGTAGTGCCGATGATGACGGTGATGTTTTCC
ATGCTTTCGCTGATTCCGGCATTCCATGGCATGGGCGAGTCGATCCAGACTTTCATCTTTCGCAATTTCGTG
CCTTCCGCTGGAGAAGCGGTGGAAACCTACCTGAAGAGTTTCACCACCCAGGCCCGGCACCTGACCTGGGTC
GGGGTGGTCTTTCTGGCAGTCACCGCCTTCACCATGCTGGTGACCATCGAGAAAGCCTTCAACGAGATCTGG
CGGGTTCGCCAGCCACGCCGGGGTGTCGGGCGGTTCCTCCTCTACTGGGCGATCCTCAGCCTGGGCCCATTG
TTGCTGGGGGCCGGCTTCGCCGTGACCACCTACATCACTTCGCTGTCGCTGCTCCATGGCCCGGACGCGTTG
CCGGGCGCGGAGACGCTGCTAGGGCTGATGCCGCTGGCGTTCAGCGTGGCGGCCTTCACCCTGCTCTATTCG
GCGGTCCCGAACGCCCGGGTCCCGGTGCGCCATGCCCTGATGGGCGGCGTGTTCACCGCGGTACTGTTCGAA
GCCGCGAAAACCCTGTTCGGGCTGTACGTAAGCCTGTTTCCCGGCTACCAACTGATCTACGGTGCCTTCGCC
ACCGTGCCTATCTTCCTGCTGTGGATCTATCTTTCCTGGATGATCGTTCTGTTCGGCGCGGTGCTGGTCTGC
AATCTCTCTTCTTCCCGTCTCTGGCGGCGGCGCTCGCTGCCCAAGCTGATCGTTCTGCTCGGCGTGCTGAGG
GTGTTCCACCAGCGCCAGCAGCTTGGACAGTCGCTACGCCTGACCCACTTGCATCGTGCGGGTTGGCTGTTG
CCCGAGGATGAGTGGGAGGAACTGCTGGACTTTCTCGAGAAGGAGCAGTTCGTCTGCCGCGCCGGCGGAGGT
GAGTGGGTGCTGTGCCGGGATCTTGGCGCCTACAGTCTGCATCGCTTGCTGAATCGCTGCCCCTGGCCCATG
CCTAGCCGAGAGCGCATGCCTGCGAATCTGGACGAGGCGTGGTATCCGCCGTTCCAGCAGGCGATGGAACGC
TTGCAGGTGGAGCAGGAGGCGCTGTTCGGAAAAAGCCTGGCCCACTGGCTGGCGGACGGAACCTCGGGAGCG
AAGGTGACGTAA
Translation:
MREHFNDGVEFARFLAHRFVTDKAPNSAAALTYTTLFAVVPMMTVMFSMLSLIPAFHGMGESIQTFIFRNFV
PSAGEAVETYLKSFTTQARHLTWVGVVFLAVTAFTMLVTIEKAFNEIWRVRQPRRGVGRFLLYWAILSLGPL
LLGAGFAVTTYITSLSLLHGPDALPGAETLLGLMPLAFSVAAFTLLYSAVPNARVPVRHALMGGVFTAVLFE
AAKTLFGLYVSLFPGYQLIYGAFATVPIFLLWIYLSWMIVLFGAVLVCNLSSSRLWRRRSLPKLIVLLGVLR
VFHQRQQLGQSLRLTHLHRAGWLLPEDEWEELLDFLEKEQFVCRAGGGEWVLCRDLGAYSLHRLLNRCPWPM
PSRERMPANLDEAWYPPFQQAMERLQVEQEALFGKSLAHWLADGTSGAKVT*
AnnotationID:1374GeneID:1365
AnnotatorUID: danlee
Modification Date/Time: 2004-05-11 14:02:38
Gene Name:
Confidence Code:3
GeneProduct:probable ribonuclease
Cell Localization:()
Synonyms:PA0951, rbn
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(24) Transcription, RNA processing and degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03631, COG1295
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam03631, Ribonuclease_BN, Ribonuclease BN-like family. Score: 177, 2e-45
COG1295, Rbn, Predicted membrane protein [Function unknown]. Score: 174, 2e-44






   
Genomic Context:






   
Comment:


















    ReferenceID:2733




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19878




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1365
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2485
                           PA0951_tr
                           translation of PA0951
                           411
                           99.27
                           99.75
                           0
                           2124.0
     

     
     
78499
                           gb|AAG04340.1|AE004529_6
                           (AE004529) probable ribonuclease [Pseudomonas aeruginosa PAO1]
                           411
                           99.27
                           99.75
                           0
                           2124.0
     

     
     
78503
                           gb|AAF95881.1|
                           (AE004339) ribonuclease BN [Vibrio cholerae O1 biovar eltor str. N16961]
                           419
                           30.54
                           41.52
                           130
                           571.0
     

     
     
78500
                           gb|AAO09388.1|AE016799_286
                           (AE016799) Ribonuclease BN [Vibrio vulnificus CMCP6]
                           427
                           28.57
                           39.57
                           130
                           572.0
     

     
     
78504
                           dbj|BAC58388.1|
                           (AP005073) ribonuclease BN [Vibrio parahaemolyticus]
                           423
                           28.36
                           40.18
                           121
                           553.0
     

     






      

          
GC ORFID: 44367How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0951Glimmer Score: 

          
Start: 340023Stop: 341258

          
Length: 1236


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0951 translation of PA0951Homolog Bit Score 822.0

          
Other Homologs:  t_PA0951 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCGAACATTTCAACGATGGGGTCGAGTTCGCTCGCTTCCTCGCTCATCGCTTCGTCACCGACAAGGCT 
CCCAACAGCGCGGCGGCGCTGACCTACACCACGTTGTTCGCGGTAGTGCCGATGATGACGGTGATGTTTTCC 
ATGCTTTCGCTGATTCCGGCATTCCATGGCATGGGCGAGTCGATCCAGACTTTCATCTTTCGCAATTTCGTG 
CCTTCCGCTGGAGAAGCGGTGGAAACCTACCTGAAGAGTTTCACCACCCAGGCCCGGCACCTGACCTGGGTC 
GGGGTGGTCTTTCTGGCAGTCACCGCCTTCACCATGCTGGTGACCATCGAGAAAGCCTTCAACGAGATCTGG 
CGGGTTCGCCAGCCACGCCGGGGTGTCGGGCGGTTCCTCCTCTACTGGGCGATCCTCAGCCTGGGCCCATTG 
TTGCTGGGGGCCGGCTTCGCCGTGACCACCTACATCACTTCGCTGTCGCTGCTCCATGGCCCGGACGCGTTG 
CCGGGCGCGGAGACGCTGCTAGGGCTGATGCCGCTGGCGTTCAGCGTGGCGGCCTTCACCCTGCTCTATTCG 
GCGGTCCCGAACGCCCGGGTCCCGGTGCGCCATGCCCTGATGGGCGGCGTGTTCACCGCGGTACTGTTCGAA 
GCCGCGAAAACCCTGTTCGGGCTGTACGTAAGCCTGTTTCCCGGCTACCAACTGATCTACGGTGCCTTCGCC 
ACCGTGCCTATCTTCCTGCTGTGGATCTATCTTTCCTGGATGATCGTTCTGTTCGGCGCGGTGCTGGTCTGC 
AATCTCTCTTCTTCCCGTCTCTGGCGGCGGCGCTCGCTGCCCAAGCTGATCGTTCTGCTCGGCGTGCTGAGG 
GTGTTCCACCAGCGCCAGCAGCTTGGACAGTCGCTACGCCTGACCCACTTGCATCGTGCGGGTTGGCTGTTG 
CCCGAGGATGAGTGGGAGGAACTGCTGGACTTTCTCGAGAAGGAGCAGTTCGTCTGCCGCGCCGGCGGAGGT 
GAGTGGGTGCTGTGCCGGGATCTTGGCGCCTACAGTCTGCATCGCTTGCTGAATCGCTGCCCCTGGCCCATG 
CCTAGCCGAGAGCGCATGCCTGCGAATCTGGACGAGGCGTGGTATCCGCCGTTCCAGCAGGCGATGGAACGC 
TTGCAGGTGGAGCAGGAGGCGCTGTTCGGAAAAAGCCTGGCCCACTGGCTGGCGGACGGAACCTCGGGAGCG 
AAGGTGACGTAA