ViewGene
Locus Name:
GeneID:
Location:

GeneID:1363
TrivialName: PA14_36090
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36090
PAO1 Ortholog Locus:PA2213
Sequence Length:1251
Protein Length:416
Start: 3216613
Stop: 3215363
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05601.1|AE004647_10 (AE004647) probable porin [Pseudomonas aeruginosa PAO1]
Identities = 413/416 (99%), Positives = 414/416 (99%)
Sequence:
ATGACCCGTTCCGCTCCGAACCTGCTGAAATCCGCCTCGCTCGCCCCGGTCCTGCTGGCCGGCCTGCCGTCG
CTCGCCGGCGCCGAGGGCTTTATCGAAGACGCCAGCGTCAGCCTCGGCCTGCGCAATCTCTATTTCAATCGC
GACTTCCGCCAGCCCGGCGCGGCGCAGTCGAAACAGGAGGAGTGGGCCCAAGGCTTTCTCCTACAGGCAAAA
TCCGGCTATACCCAGGGCACCCTGGGCCTCGGCGTCGAGCTGATCGGCCAGCTCGGCCTGAAGCTCGACAGC
AGCCCTGATCGTGCCGGCTCCGGGCTGCTGCCACGCCACGCCGACGGACGCGCAGCGGACGACTACGCGCGA
CTGGGCGTGGCGCCGAAGCTGAAGCTGTCGAATACCGAGCTGAAGCTCGGCGAACTGCTGCCGGAACTGCCA
ATCCTCCTGCGCAACGACGGCCGCCTGCTGCCACAGACCTTCCAGGGCGGCATGCTGACCTCCAGGGAAATC
GCCGGCCTGACCCTGCACGGCGGGCAGATGCGTTCGCTCAGCCAGCGCAACTCCAGCGACCACCAGGACCTC
TCGGTGGATGGGCGCGGCGGGGTGTTCTCCGACCGTTTCGACTACCTGGGCGCGGAGTACCGCTTCAATGCC
GAGCGCAGCCAGGTCGGGCTGTGGCAGGCGCGACTGCAAGACATCTACCGGCAGGACTACTACAGCTTGAGC
CACAAGCAGAGCTTCGGCGGCTGGCGCCTGGGCGCCAGCGTCGGGCTCTTCGACACGCGCGACGAAGGTGCC
GCGAAGCTCGGTGATCTGGAGAATCGCGCGCTGACCGGTTTCTTCAGCGCGACCCGCGGCCGCCACAGCCTC
GGCGCCGGCTACCAGCGCATGTACGGCGACGACGGGATGCTCTACATCGCCGGCACCAGCACGCCGTTGGTC
AACGACATCCAGGTGCGCAACTTCACCAGCGCCGGCGAGCGCTCCTGGCAACTGCGCTACGACTACGACTTC
GTCGCCCTGGGCATTCCCGGGCTGACCGCCATGGCCCGCTACGCCAGCGGCGCCCATGCCCGGACGAAGGCG
ATGGACGACGGCCGCGCCTGGGAACGCGACGTGGACGTCGCCTACGTGATCCAGAGCGGCCCGCTGAAGAAC
CTCGGCCTGCGTTGGCGCAACGCCATGCTGCGGTCCAACCATGCCGCCGATGTCGACGAGAACCGCCTGATC
CTCTCGTATTCCCTGCCGCTGCTCTGA
Translation:
MTRSAPNLLKSASLAPVLLAGLPSLAGAEGFIEDASVSLGLRNLYFNRDFRQPGAAQSKQEEWAQGFLLQAK
SGYTQGTLGLGVELIGQLGLKLDSSPDRAGSGLLPRHADGRAADDYARLGVAPKLKLSNTELKLGELLPELP
ILLRNDGRLLPQTFQGGMLTSREIAGLTLHGGQMRSLSQRNSSDHQDLSVDGRGGVFSDRFDYLGAEYRFNA
ERSQVGLWQARLQDIYRQDYYSLSHKQSFGGWRLGASVGLFDTRDEGAAKLGDLENRALTGFFSATRGRHSL
GAGYQRMYGDDGMLYIAGTSTPLVNDIQVRNFTSAGERSWQLRYDYDFVALGIPGLTAMARYASGAHARTKA
MDDGRAWERDVDVAYVIQSGPLKNLGLRWRNAMLRSNHAADVDENRLILSYSLPLL*
AnnotationID:1372GeneID:1363
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 20:08:37
Gene Name:
Confidence Code:3
GeneProduct:putative porin
Cell Localization:()
Synonyms:opdG
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:putative outer membrane porin, OprD family
Functional Category Confidence Code:5
COGs:pfam03573
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55855.1| (AE016864) outer membrane porin, OprD family [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 418

 Score =  410 bits (1053), Expect = e-113
 Identities = 206/408 (50%), Positives = 276/408 (67%), Gaps = 5/408 (1%)

>gb|AAN67006.1|AE016329_1 (AE016779) BenF-like porin [Pseudomonas putida KT2440]
          Length = 418

 Score =  406 bits (1043), Expect = e-112
 Identities = 206/414 (49%), Positives = 277/414 (66%), Gaps = 6/414 (1%)

>gb|AAN68776.1|AE016509_9 (AE016785) benzoate-specific porin [Pseudomonas putida KT2440]
          Length = 416

 Score =  374 bits (961), Expect = e-103
 Identities = 196/409 (47%), Positives = 256/409 (62%), Gaps = 18/409 (4%)








 
Structural Features:
pfam03573, OprD, outer membrane porin, OprD family.
CD-Length = 449 residues,  96.0% aligned
Score =  278 bits (713), Expect = 7e-76
Identities = 163/432 (37%), Positives = 215/432 (49%), Gaps = 48/432 (11%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2729




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19874




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32543




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1363_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1363
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2473
                           PA2213_tr
                           translation of PA2213
                           416
                           99.27
                           99.51
                           0
                           2126.0
     

     
     
78449
                           gb|AAG05601.1|AE004647_10
                           (AE004647) probable porin [Pseudomonas aeruginosa PAO1]
                           416
                           99.27
                           99.51
                           0
                           2126.0
     

     
     
78450
                           gb|AAN69533.1|AE016586_12
                           (AE016788) porin, putative [Pseudomonas putida KT2440]
                           430
                           51.16
                           66.97
                           14
                           1078.0
     

     
     
78452
                           gb|AAG03629.1|AE004462_2
                           (AE004462) probable porin [Pseudomonas aeruginosa PAO1]
                           424
                           50.47
                           66.03
                           11
                           1060.0
     

     
     
2474
                           PA0240_tr
                           translation of PA0240
                           424
                           50.47
                           66.03
                           11
                           1060.0
     

     






      

          
GC ORFID: 44365How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2213Glimmer Score: 

          
Start: 1737303Stop: 1738553

          
Length: 1251


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2213 translation of PA2213Homolog Bit Score 823.0

          
Other Homologs:  t_PA0240 (ORF: BLASTX 408.0), t_PA4898 (ORF: BLASTX 407.0), psyr_15may02_Scaffold1_revised_gene342 (ORF: BLASTX 405.0), t_PA3038 (ORF: BLASTX 392.0), t_PA0755 (ORF: BLASTX 392.0), psyr_15may02_Scaffold3_revised_gene5124 (ORF: BLASTX 390.0), t_PA1025 (ORF: BLASTX 377.0), t_PA2113 (ORF: BLASTX 364.0), t_PA3588 (ORF: BLASTX 363.0), t_PA4179 (ORF: BLASTX 330.0), t_PA4137 (ORF: BLASTX 324.0), t_PA0291 (ORF: BLASTX 316.0), t_PA2213 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCCGTTCCGCTCCGAACCTGCTGAAATCCGCCTCGCTCGCCCCGGTCCTGCTGGCCGGCCTGCCGTCG 
CTCGCCGGCGCCGAGGGCTTTATCGAAGACGCCAGCGTCAGCCTCGGCCTGCGCAATCTCTATTTCAATCGC 
GACTTCCGCCAGCCCGGCGCGGCGCAGTCGAAACAGGAGGAGTGGGCCCAAGGCTTTCTCCTACAGGCAAAA 
TCCGGCTATACCCAGGGCACCCTGGGCCTCGGCGTCGAGCTGATCGGCCAGCTCGGCCTGAAGCTCGACAGC 
AGCCCTGATCGTGCCGGCTCCGGGCTGCTGCCACGCCACGCCGACGGACGCGCAGCGGACGACTACGCGCGA 
CTGGGCGTGGCGCCGAAGCTGAAGCTGTCGAATACCGAGCTGAAGCTCGGCGAACTGCTGCCGGAACTGCCA 
ATCCTCCTGCGCAACGACGGCCGCCTGCTGCCACAGACCTTCCAGGGCGGCATGCTGACCTCCAGGGAAATC 
GCCGGCCTGACCCTGCACGGCGGGCAGATGCGTTCGCTCAGCCAGCGCAACTCCAGCGACCACCAGGACCTC 
TCGGTGGATGGGCGCGGCGGGGTGTTCTCCGACCGTTTCGACTACCTGGGCGCGGAGTACCGCTTCAATGCC 
GAGCGCAGCCAGGTCGGGCTGTGGCAGGCGCGACTGCAAGACATCTACCGGCAGGACTACTACAGCTTGAGC 
CACAAGCAGAGCTTCGGCGGCTGGCGCCTGGGCGCCAGCGTCGGGCTCTTCGACACGCGCGACGAAGGTGCC 
GCGAAGCTCGGTGATCTGGAGAATCGCGCGCTGACCGGTTTCTTCAGCGCGACCCGCGGCCGCCACAGCCTC 
GGCGCCGGCTACCAGCGCATGTACGGCGACGACGGGATGCTCTACATCGCCGGCACCAGCACGCCGTTGGTC 
AACGACATCCAGGTGCGCAACTTCACCAGCGCCGGCGAGCGCTCCTGGCAACTGCGCTACGACTACGACTTC 
GTCGCCCTGGGCATTCCCGGGCTGACCGCCATGGCCCGCTACGCCAGCGGCGCCCATGCCCGGACGAAGGCG 
ATGGACGACGGCCGCGCCTGGGAACGCGACGTGGACGTCGCCTACGTGATCCAGAGCGGCCCGCTGAAGAAC 
CTCGGCCTGCGTTGGCGCAACGCCATGCTGCGGTCCAACCATGCCGCCGATGTCGACGAGAACCGCCTGATC 
CTCTCGTATTCCCTGCCGCTGCTCTGA