ViewGene
Locus Name:
GeneID:
Location:

GeneID:1362
TrivialName: PA14_39560
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39560
PAO1 Ortholog Locus:PA1930
Sequence Length:1296
Protein Length:431
Start: 3522169
Stop: 3520874
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05318.1|AE004619_5 (AE004619) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1]
Identities = 421/431 (97%), Positives = 429/431 (99%)
Sequence:
ATGCTCTTCGGCAGAAAAAGCAGGGCGGTCGAAAGCGCCGCCAAGGATGAAGATGTAgCgTGGCGACtcgaG
GCCATCGGGCAGAACGTCGCCACCATCCGATTCACTCCCGATGGCCAGATACTGTCCGCCAACCCGCTGTTC
CTCGCGGCGGTCGGCTATTCGGCGGACGAACTGGTCGGCAAGCACCACCGGATCTTCTGCGAAGAGGACTAC
CAGGCCTCTGCCGCCTACGTGCGCTTCTGGAAGGAACTGGCCAGCGGCACGCCCCAGCGCGGTGTGTTCAAG
CGCCTGCGACGCGACGGGTCGCCGATCTGGCTGGAGGCCACCTATTTCCCGGTGAAGAATGCCGAAGGGGCG
GTCGTCGAGGTGCTGAAGATCGCCGCCGACGTGACCCGCAACCATTCCGAACTGCTCCTGCTCAACGCGATC
AACGACTCCATACGCCAGTCCATGGCCGTCATCGAGTTCACCCCGGACGGCGAGATACTCGATGCCAACGAA
AACTTCCTGCGTCTCTTCGGCTACAGCCTCAAGTCGCTCAAGGGCCAGCACCACCGCATGCTCTGCTTCGAC
GAGTTCTATCGGGAGAACCCGGATTTCTGGGCCCGGTTGCGGCACGGCGAATTCTCCCGCGGGCATTTCGAG
CGCCGCACCGCCTCCGGTGAGCGGGTACATATCGAAGCCACCTACAACCCGGTCAAGGACGGTTCGGGGCGG
ATAATCAAGGTCATCAAGTTCGCCATCGACGTTACCGAACAGGTCAATCGCAACGAGGAAGTACGGCGCGCC
GCCGAGCTGTCGTTCTCCACCGCGGAAGAGACCGCGCAGATTTCCACCCGCGGCATCGACTCCCTCGACCAG
TCCGTCGCCCTGTCGGCCAAGACCCTGTCGATGGTCAACACCGCCGTCGGCCTGATTTCCCAGCTCACCCAC
CAGACCAAGGACATCGAGAACATCGTCACCACCATCCAGAGCGTCGCCGAACAGACCAACCTGTTGGCCCTC
AACGCCGCCATCGAGGCTGCTCGCGCCGGCGACATGGGGCGCGGCTTCGCGGTGGTCGCCGACGAGGTGCGG
CAACTGGCGGCGCGCACCAGCGGCGCCACGGTGGAGATCAAGAACGTGGTCACCGAGAACGTCAAGCTGACC
CAGCAGATCAACCACAACATGCAGACCATCGAGTCCAGCGCCCAGGAGAACAACAACCAGATCACCACCGTG
GCCGGCATCATGCAGGAGATCAGCAAGGGCGCCGAGCACGTGGCGCGGGTGGTGTCGAGCCTGTTCAAGTGA
Translation:
MLFGRKSRAVESAAKDEDVAWRLEAIGQNVATIRFTPDGQILSANPLFLAAVGYSADELVGKHHRIFCEEDY
QASAAYVRFWKELASGTPQRGVFKRLRRDGSPIWLEATYFPVKNAEGAVVEVLKIAADVTRNHSELLLLNAI
NDSIRQSMAVIEFTPDGEILDANENFLRLFGYSLKSLKGQHHRMLCFDEFYRENPDFWARLRHGEFSRGHFE
RRTASGERVHIEATYNPVKDGSGRIIKVIKFAIDVTEQVNRNEEVRRAAELSFSTAEETAQISTRGIDSLDQ
SVALSAKTLSMVNTAVGLISQLTHQTKDIENIVTTIQSVAEQTNLLALNAAIEAARAGDMGRGFAVVADEVR
QLAARTSGATVEIKNVVTENVKLTQQINHNMQTIESSAQENNNQITTVAGIMQEISKGAEHVARVVSSLFK*
AnnotationID:1371GeneID:1362
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 12:12:02
Gene Name:
Confidence Code:3
GeneProduct:putative chemotaxis transducer
Cell Localization:()
Synonyms:PA1930
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(10) Chemotaxis
Alternate Gene Product Name:putative methyl-accepting chemotaxis protein
Functional Category Confidence Code:5
COGs:COG0840
Secondary Functional Category(ies):adaptation, protection
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAF94563.1| (AE004219) methyl-accepting chemotaxis protein [Vibrio cholerae]
          Length = 438

 Score =  382 bits (982), Expect = e-105
 Identities = 195/432 (45%), Positives = 286/432 (66%), Gaps = 6/432 (1%)

>dbj|BAC61897.1| (AP005085) methyl-accepting chemotaxis protein [Vibrio
           parahaemolyticus]
          Length = 447

 Score =  329 bits (843), Expect = 2e-89
 Identities = 179/432 (41%), Positives = 268/432 (62%), Gaps = 7/432 (1%)

>gb|AAN69016.1|AE016533_8 (AE016786) methyl-accepting chemotaxis transducer/sensory box
           protein [Pseudomonas putida KT2440]
          Length = 439

 Score =  325 bits (832), Expect = 4e-88
 Identities = 186/436 (42%), Positives = 255/436 (58%), Gaps = 16/436 (3%)






 
Structural Features:
COG0840, Tar, Methyl-accepting chemotaxis protein 
[Cell motility and secretion / Signal transduction mechanisms]
CD-Length = 408 residues,  85.5% aligned
Score =  125 bits (315), Expect = 7e-30
Identities = 74/352 (21%), Positives = 136/352 (38%), Gaps = 3/352 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2727




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19872




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32782




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1362_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1362
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2472
                           PA1930_tr
                           translation of PA1930
                           431
                           97.67
                           99.53
                           0
                           2127.0
     

     
     
78426
                           gb|AAG05318.1|AE004619_5
                           (AE004619) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1]
                           431
                           97.67
                           99.53
                           0
                           2127.0
     

     
     
78427
                           gb|AAF94563.1|
                           (AE004219) methyl-accepting chemotaxis protein [Vibrio cholerae O1 biovar eltor str. N16961]
                           441
                           44.21
                           64.85
                           13
                           986.0
     

     
     
78428
                           gb|AAF96762.1|
                           (AE004414) methyl-accepting chemotaxis protein [Vibrio cholerae O1 biovar eltor str. N16961]
                           475
                           42.31
                           60.00
                           54
                           987.0
     

     
     
78429
                           gb|AAQ59373.1|
                           (AE016916) probable methyl-accepting chemotaxis protein [Chromobacterium violaceum ATCC 12472]
                           453
                           42.16
                           59.38
                           34
                           866.0
     

     






      

          
GC ORFID: 44364How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1930Glimmer Score: 

          
Start: 1431742Stop: 1433037

          
Length: 1296


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1930 translation of PA1930Homolog Bit Score 823.0

          
Other Homologs:  t_PA1930 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTCTTCGGCAGAAAAAGCAGGGCGGTCGAAAGCGCCGCCAAGGATGAAGATGTAgCgTGGCGACtcgaG 
GCCATCGGGCAGAACGTCGCCACCATCCGATTCACTCCCGATGGCCAGATACTGTCCGCCAACCCGCTGTTC 
CTCGCGGCGGTCGGCTATTCGGCGGACGAACTGGTCGGCAAGCACCACCGGATCTTCTGCGAAGAGGACTAC 
CAGGCCTCTGCCGCCTACGTGCGCTTCTGGAAGGAACTGGCCAGCGGCACGCCCCAGCGCGGTGTGTTCAAG 
CGCCTGCGACGCGACGGGTCGCCGATCTGGCTGGAGGCCACCTATTTCCCGGTGAAGAATGCCGAAGGGGCG 
GTCGTCGAGGTGCTGAAGATCGCCGCCGACGTGACCCGCAACCATTCCGAACTGCTCCTGCTCAACGCGATC 
AACGACTCCATACGCCAGTCCATGGCCGTCATCGAGTTCACCCCGGACGGCGAGATACTCGATGCCAACGAA 
AACTTCCTGCGTCTCTTCGGCTACAGCCTCAAGTCGCTCAAGGGCCAGCACCACCGCATGCTCTGCTTCGAC 
GAGTTCTATCGGGAGAACCCGGATTTCTGGGCCCGGTTGCGGCACGGCGAATTCTCCCGCGGGCATTTCGAG 
CGCCGCACCGCCTCCGGTGAGCGGGTACATATCGAAGCCACCTACAACCCGGTCAAGGACGGTTCGGGGCGG 
ATAATCAAGGTCATCAAGTTCGCCATCGACGTTACCGAACAGGTCAATCGCAACGAGGAAGTACGGCGCGCC 
GCCGAGCTGTCGTTCTCCACCGCGGAAGAGACCGCGCAGATTTCCACCCGCGGCATCGACTCCCTCGACCAG 
TCCGTCGCCCTGTCGGCCAAGACCCTGTCGATGGTCAACACCGCCGTCGGCCTGATTTCCCAGCTCACCCAC 
CAGACCAAGGACATCGAGAACATCGTCACCACCATCCAGAGCGTCGCCGAACAGACCAACCTGTTGGCCCTC 
AACGCCGCCATCGAGGCTGCTCGCGCCGGCGACATGGGGCGCGGCTTCGCGGTGGTCGCCGACGAGGTGCGG 
CAACTGGCGGCGCGCACCAGCGGCGCCACGGTGGAGATCAAGAACGTGGTCACCGAGAACGTCAAGCTGACC 
CAGCAGATCAACCACAACATGCAGACCATCGAGTCCAGCGCCCAGGAGAACAACAACCAGATCACCACCGTG 
GCCGGCATCATGCAGGAGATCAGCAAGGGCGCCGAGCACGTGGCGCGGGTGGTGTCGAGCCTGTTCAAGTGA