ViewGene
Locus Name:
GeneID:
Location:

GeneID:1361
TrivialName: PA14_45710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45710
PAO1 Ortholog Locus:PA1450
Sequence Length:1260
Protein Length:419
Start: 4066685
Stop: 4065426
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04839.1|AE004574_10 (AE004574) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 415/419 (99%), Positives = 416/419 (99%)
Sequence:
ATGGATCGAACCCTGTCTGATCGTATTTTCCCGCCTGTCCTCCTGTTGCTCGCCCTGGCCTGGCTGCTGCCC
TGGATGGCTGTGCACGCCGAAGCGCCGGCGGAATGGGTCGCCTTGCCCCTGTCGGAGCGGGTGGTGGATGCC
ACCCACACGCTGGACGAGGCGACGCGCCAACGCCTGGTGGAGAAGCTCGAGGCGCTGGAGCGGCGACGCGGC
GCGCAGATCGCGCTGGTGATGCTGCCGACTACCGGTACCCTCGATATCGAAGCCTTCTCCGACAAGCTGTTC
CAGGCCTGGAAGCTCGGCCGCAAGGCGGTCGACGACGGTCTGCTGCTGGTGGTGGCCAAGGATGACCGGCGC
ATGCGCATCGAGGTCGGCTACGGCCTGGAGGGTGCGGTGCCCGATGTGGTCGCCGGACGGATCATTCGCGAG
CGGATGGCCCCGGCATTTCGCGAGGGTGACTACGCCGGCGGGATCGAGGCCGCGGTGGACGAGCTGATCCGC
CTGGTCGACGGCGAAACGCTGCCGGCGGCCGCGTCGTCGGGTGCGCCGAAAGTCTCGCTGGGGCAATTGCCG
GCGGAAGCCTGGGCGCTGCTGGTCGCCTTCATCTACGGATCGTTGGCCGGAGTGCTGTTGAGTGCCCGGGCG
CTGCGCTGGCCCTGGCTGCTCGGCGGGGCGCTGCTCTGCTGGCTGTTGGGCACGCTGGCCGGCGCTTCCGGC
GAATGGATGAGCGTGCTGCTGGTCGCTCCGCTGTGCATGCTGGTCGGCGGCGCGACCTTCGGCGCGCTGTGG
ACGGTGCGCCCGGCCTTCTACCTGGTGATCGGCGTACTGGTCTATGTAGCCCTGCTCGGGCTGGCGGCGCAT
TGGTTCAGCGCGGTGTCCTTCATCTACGGCCTGCTGTGGCCGGCCGGGGTGCTGATGCTGGCGGTTCTCTGC
TGGTCGAACTACCGCCTGATGCGCTCGCTATGGCGCGAGCGGCGGAAAAGTTTCCACCGCCGACTGTGGGCG
TTGCTGGCGGCCTACCTGCTGCTCGGATTGCTGTCCGGTGGTCTGGACGCACCGCTGGTCTGGCTGGCCCTG
CTACCGTTCCAGCTCATGCTCGGGCTGCTGGTGTTCGGCCAGGTACGCCTGAGTGGGGGTGGTGGAGGCTCG
TCGGGAAGCTCCGGCGGCGGTTCCTCCTCCTCTTCCTCCTCGTCGTCCGGCGGCTTTTCCGGGGGCGGTGGT
TCCAGCGGCGGAGGCGGTGCCTCGGGCAGTTGGTAA
Translation:
MDRTLSDRIFPPVLLLLALAWLLPWMAVHAEAPAEWVALPLSERVVDATHTLDEATRQRLVEKLEALERRRG
AQIALVMLPTTGTLDIEAFSDKLFQAWKLGRKAVDDGLLLVVAKDDRRMRIEVGYGLEGAVPDVVAGRIIRE
RMAPAFREGDYAGGIEAAVDELIRLVDGETLPAAASSGAPKVSLGQLPAEAWALLVAFIYGSLAGVLLSARA
LRWPWLLGGALLCWLLGTLAGASGEWMSVLLVAPLCMLVGGATFGALWTVRPAFYLVIGVLVYVALLGLAAH
WFSAVSFIYGLLWPAGVLMLAVLCWSNYRLMRSLWRERRKSFHRRLWALLAAYLLLGLLSGGLDAPLVWLAL
LPFQLMLGLLVFGQVRLSGGGGGSSGSSGGGSSSSSSSSSGGFSGGGGSSGGGGASGSW*
AnnotationID:1370GeneID:1361
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 10:10:46
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1450
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1512
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM40099.1| (AE012178) glycine rich protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 305

 Score =  172 bits (436), Expect = 3e-42
 Identities = 103/256 (40%), Positives = 147/256 (57%), Gaps = 13/256 (5%)








 
Structural Features:
COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type.
CD-Length = 271 residues,  86.0% aligned
Score =  188 bits (479), Expect = 1e-48
Identities = 100/234 (42%), Positives = 136/234 (58%), Gaps = 8/234 (3%)










   
Genomic Context:






   
Comment:


















    ReferenceID:2725




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19870




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38050




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type: (text/plain)







    
Data:1361_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1361
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2470
                           PA1450_tr
                           translation of PA1450
                           419
                           99.04
                           99.28
                           0
                           2126.0
     

     
     
78409
                           gb|AAG04839.1|AE004574_10
                           (AE004574) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           419
                           99.04
                           99.28
                           0
                           2126.0
     

     
     
2471
                           PA1451_tr
                           translation of PA1451
                           491
                           38.90
                           48.67
                           116
                           697.0
     

     
     
78410
                           gb|AAG04840.1|AE004574_11
                           (AE004574) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           491
                           38.90
                           48.67
                           116
                           697.0
     

     
     
78413
                           emb|CAE27015.1|
                           (BX572598) DUF477 [Rhodopseudomonas palustris CGA009]
                           432
                           34.95
                           47.22
                           138
                           537.0
     

     






      

          
GC ORFID: 44363How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1450Glimmer Score: 

          
Start: 887224Stop: 888483

          
Length: 1260


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1450 translation of PA1450Homolog Bit Score 823.0

          
Other Homologs:  t_PA1450 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGATCGAACCCTGTCTGATCGTATTTTCCCGCCTGTCCTCCTGTTGCTCGCCCTGGCCTGGCTGCTGCCC 
TGGATGGCTGTGCACGCCGAAGCGCCGGCGGAATGGGTCGCCTTGCCCCTGTCGGAGCGGGTGGTGGATGCC 
ACCCACACGCTGGACGAGGCGACGCGCCAACGCCTGGTGGAGAAGCTCGAGGCGCTGGAGCGGCGACGCGGC 
GCGCAGATCGCGCTGGTGATGCTGCCGACTACCGGTACCCTCGATATCGAAGCCTTCTCCGACAAGCTGTTC 
CAGGCCTGGAAGCTCGGCCGCAAGGCGGTCGACGACGGTCTGCTGCTGGTGGTGGCCAAGGATGACCGGCGC 
ATGCGCATCGAGGTCGGCTACGGCCTGGAGGGTGCGGTGCCCGATGTGGTCGCCGGACGGATCATTCGCGAG 
CGGATGGCCCCGGCATTTCGCGAGGGTGACTACGCCGGCGGGATCGAGGCCGCGGTGGACGAGCTGATCCGC 
CTGGTCGACGGCGAAACGCTGCCGGCGGCCGCGTCGTCGGGTGCGCCGAAAGTCTCGCTGGGGCAATTGCCG 
GCGGAAGCCTGGGCGCTGCTGGTCGCCTTCATCTACGGATCGTTGGCCGGAGTGCTGTTGAGTGCCCGGGCG 
CTGCGCTGGCCCTGGCTGCTCGGCGGGGCGCTGCTCTGCTGGCTGTTGGGCACGCTGGCCGGCGCTTCCGGC 
GAATGGATGAGCGTGCTGCTGGTCGCTCCGCTGTGCATGCTGGTCGGCGGCGCGACCTTCGGCGCGCTGTGG 
ACGGTGCGCCCGGCCTTCTACCTGGTGATCGGCGTACTGGTCTATGTAGCCCTGCTCGGGCTGGCGGCGCAT 
TGGTTCAGCGCGGTGTCCTTCATCTACGGCCTGCTGTGGCCGGCCGGGGTGCTGATGCTGGCGGTTCTCTGC 
TGGTCGAACTACCGCCTGATGCGCTCGCTATGGCGCGAGCGGCGGAAAAGTTTCCACCGCCGACTGTGGGCG 
TTGCTGGCGGCCTACCTGCTGCTCGGATTGCTGTCCGGTGGTCTGGACGCACCGCTGGTCTGGCTGGCCCTG 
CTACCGTTCCAGCTCATGCTCGGGCTGCTGGTGTTCGGCCAGGTACGCCTGAGTGGGGGTGGTGGAGGCTCG 
TCGGGAAGCTCCGGCGGCGGTTCCTCCTCCTCTTCCTCCTCGTCGTCCGGCGGCTTTTCCGGGGGCGGTGGT 
TCCAGCGGCGGAGGCGGTGCCTCGGGCAGTTGGTAA