ViewGene
Locus Name:
GeneID:
Location:

GeneID:1360
TrivialName: PA14_49750
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49750
PAO1 Ortholog Locus:PA1131
Sequence Length:1269
Protein Length:422
Start: 4425603
Stop: 4426871
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04520.1|AE004543_4 (AE004543) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 420/422 (99%), Positives = 422/422 (100%)
Sequence:
GTGTCCACGACCAGCCTCTGCCCCTCCGCCACGCGGGAACACGGTCCCGGCGCGAAACGCGTCCTGCCTCTG
CTGTTCCTCACCTGCCTGCTGGATGCTTCTGGCGTCGGCCTGATCGTGCCCCTGCTGCCGACGCTGATCGGC
AGCGTGGCGCCGCTGGCGGTCCGCGACGCGGCCACCTGGGGCGCCGCCCTGGTGATGACCTTCGCGCTGCTG
CAATTGTTCTTTTCGCCGGTCCTCGGCAGCCTCAGCGACCGCTTCGGACGCCGCCCCGTCCTGGTCCTGGCG
ATGCTCGGCTTCGCCCTCAGCTATCTGCTTCTGGCGTTGGCCGACAGCCTCTGGATGCTGTTCCTCGGTCGC
GCGCTGGCCGGGCTCACCGGCGCCAGCGTGGCCACCGCGATGGCCTGCGCGGCGGACCTCGGCACGCACGGG
CAGCGCACCCGGCACTTCGGCTGGCTGTACGCCGGCCTCGCCCTGGGCATGATCCTCGGCCCCGCCCTCGGT
GGGCTGCTGGCGGTGCACGGCACGACGCTGCCGCTGTTGCTGGCCGCCGGCCTGTGCCTGCTCAACGCCCTG
CTCGCCGGCCTGTTCCTCGAGGAAACCCTGCCCCCGACGCGACGCCGCCGCCTGGATCCGAGGCGGATGAAC
GCCTTGCGCTCGATCAGCGGCCTGGCTCGGCAACCGGGGGTCGGACGCCTGCTGGCGGTGCTTGCCCTGGTA
TTCCTCGGCTTGCAGGCGGTGATGGTGGTCTGGCCCTTCTTCGTGATCGAGAAGTTTCACTGGAGCAGCGCC
TGGATCGGCTACTCGCTGGCCCTCTACGGCGTGCTCGCGGTGCTCGCCCAGACCCTCGGCGTGAACCTCTGC
AAGCGGCGCCTGGACGACGCCCGCCTGCTGCGCCTGGGCCTCGCCCTGCAAGGCTGCGGCCTGCTGCTGTTC
GCCCTGGTCGACTCGTCATTCTGGCTGGTCTGCGCGCTGCTGCCCTTCGCGCTCGGCAGCCTCGCCACCCCG
GCCATGCAGGGGCTGCTCTCGGCCCGCGTGCCGGTCGATCGCCAGGGCGAGTTGCAGGGCGTGCTGAGCAGC
CTGATGAGCCTCGCCGCGATCGTCGGTCCGCCGCTGATGAGCGGCCTGTTCCACTGGGGCAGCGGTCCGCTC
GCGCCAGTGCCCCTGGCCGGCGCGCCATTCCTCGCCGGCGCCCTTCTCGTTCTGGCCGGGCTGGTCCTGGCC
TGGCAACTTCGACCTACGGGAGAAGAACGATCATGGACCGGATAG
Translation:
MSTTSLCPSATREHGPGAKRVLPLLFLTCLLDASGVGLIVPLLPTLIGSVAPLAVRDAATWGAALVMTFALL
QLFFSPVLGSLSDRFGRRPVLVLAMLGFALSYLLLALADSLWMLFLGRALAGLTGASVATAMACAADLGTHG
QRTRHFGWLYAGLALGMILGPALGGLLAVHGTTLPLLLAAGLCLLNALLAGLFLEETLPPTRRRRLDPRRMN
ALRSISGLARQPGVGRLLAVLALVFLGLQAVMVVWPFFVIEKFHWSSAWIGYSLALYGVLAVLAQTLGVNLC
KRRLDDARLLRLGLALQGCGLLLFALVDSSFWLVCALLPFALGSLATPAMQGLLSARVPVDRQGELQGVLSS
LMSLAAIVGPPLMSGLFHWGSGPLAPVPLAGAPFLAGALLVLAGLVLAWQLRPTGEERSWTG*
AnnotationID:1369GeneID:1360
AnnotatorUID: danlee
Modification Date/Time: 2004-09-08 16:04:33
Gene Name:
Confidence Code:3
GeneProduct:probable MFS transporter
Cell Localization:()
Synonyms:PA1131
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2814
Secondary Functional Category(ies):Antibiotic resistance and susceptibility; Transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]
       CD-Length = 394 residues,  84.5% aligned
       Score = 93.0 bits (231), Expect = 6e-20






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14337




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19868




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1360
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2469
                           PA1131_tr
                           translation of PA1131
                           422
                           99.52
                           99.99
                           0
                           2127.0
     

     
     
78405
                           gb|AAG04520.1|AE004543_4
                           (AE004543) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           422
                           99.28
                           99.99
                           0
                           2124.0
     

     
     
78406
                           gb|AAO16461.1|
                           (AY171577) putative tetracycline resistance protein [uncultured bacterium]
                           426
                           18.30
                           25.82
                           242
                           327.0
     

     
     
78407
                           gb|AAO16460.1|
                           (AY171576) putative tetracycline resistance protein [uncultured bacterium]
                           425
                           18.11
                           25.41
                           240
                           323.0
     

     
     
78408
                           gb|AAO16462.1|
                           (AY171578) putative tetracycline resistance protein [uncultured bacterium]
                           426
                           17.60
                           24.41
                           242
                           308.0
     

     






      

          
GC ORFID: 44362How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1131Glimmer Score: 

          
Start: 528305Stop: 527037

          
Length: 1269


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1131 translation of PA1131Homolog Bit Score 823.0

          
Other Homologs:  t_PA1131 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGTCCACGACCAGCCTCTGCCCCTCCGCCACGCGGGAACACGGTCCCGGCGCGAAACGCGTCCTGCCTCTG 
CTGTTCCTCACCTGCCTGCTGGATGCTTCTGGCGTCGGCCTGATCGTGCCCCTGCTGCCGACGCTGATCGGC 
AGCGTGGCGCCGCTGGCGGTCCGCGACGCGGCCACCTGGGGCGCCGCCCTGGTGATGACCTTCGCGCTGCTG 
CAATTGTTCTTTTCGCCGGTCCTCGGCAGCCTCAGCGACCGCTTCGGACGCCGCCCCGTCCTGGTCCTGGCG 
ATGCTCGGCTTCGCCCTCAGCTATCTGCTTCTGGCGTTGGCCGACAGCCTCTGGATGCTGTTCCTCGGTCGC 
GCGCTGGCCGGGCTCACCGGCGCCAGCGTGGCCACCGCGATGGCCTGCGCGGCGGACCTCGGCACGCACGGG 
CAGCGCACCCGGCACTTCGGCTGGCTGTACGCCGGCCTCGCCCTGGGCATGATCCTCGGCCCCGCCCTCGGT 
GGGCTGCTGGCGGTGCACGGCACGACGCTGCCGCTGTTGCTGGCCGCCGGCCTGTGCCTGCTCAACGCCCTG 
CTCGCCGGCCTGTTCCTCGAGGAAACCCTGCCCCCGACGCGACGCCGCCGCCTGGATCCGAGGCGGATGAAC 
GCCTTGCGCTCGATCAGCGGCCTGGCTCGGCAACCGGGGGTCGGACGCCTGCTGGCGGTGCTTGCCCTGGTA 
TTCCTCGGCTTGCAGGCGGTGATGGTGGTCTGGCCCTTCTTCGTGATCGAGAAGTTTCACTGGAGCAGCGCC 
TGGATCGGCTACTCGCTGGCCCTCTACGGCGTGCTCGCGGTGCTCGCCCAGACCCTCGGCGTGAACCTCTGC 
AAGCGGCGCCTGGACGACGCCCGCCTGCTGCGCCTGGGCCTCGCCCTGCAAGGCTGCGGCCTGCTGCTGTTC 
GCCCTGGTCGACTCGTCATTCTGGCTGGTCTGCGCGCTGCTGCCCTTCGCGCTCGGCAGCCTCGCCACCCCG 
GCCATGCAGGGGCTGCTCTCGGCCCGCGTGCCGGTCGATCGCCAGGGCGAGTTGCAGGGCGTGCTGAGCAGC 
CTGATGAGCCTCGCCGCGATCGTCGGTCCGCCGCTGATGAGCGGCCTGTTCCACTGGGGCAGCGGTCCGCTC 
GCGCCAGTGCCCCTGGCCGGCGCGCCATTCCTCGCCGGCGCCCTTCTCGTTCTGGCCGGGCTGGTCCTGGCC 
TGGCAACTTCGACCTACGGGAGAAGAACGATCATGGACCGGATAG