ViewGene
Locus Name:
GeneID:
Location:

GeneID:1358
TrivialName: PA14_05250
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05250
PAO1 Ortholog Locus:PA0401
Sequence Length:1272
Protein Length:423
Start: 459428
Stop: 458157
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03790.1|AE004477_7 (AE004477) noncatalytic dihydroorotase-like protein [Pseudomonas aeruginosa PAO1]
Identities = 421/423 (99%), Positives = 422/423 (99%)
Sequence:
ATGACCATCAGTATCCGAGGCGCCCGCGTCATCGACCCGGCCAGCGGCCTGGACCAGGTCGGCGACCTCCAC
ATCGAGGCCGGCAAGATCGTCGCCATCGGCGCCGCGCCGGCCGGCTTCAGCGCCCAGAAGACCCTCGACGGC
GCCGGCCTGGTGGCCGCGCCGGGACTGGTCGACCTCAGCGTCGCCCTGCGCGAGCCGGGCTACGGACGCAAG
GGCAACGTCGAAAGCGAGACCCGCGCCGCCGCGGCCGGCGGCACCACCAGCCTGTGCTGCCCGCCCTATACC
CGGCCGGTGCTGGACACCCCGGCGGTGGCCGAGCTGATCCTCGACCGGGCCCGTGAGGCCGGCAACGCCAAG
GTCTACCCCATCGGCGCGCTGACCCGCGGCTTCGGCGGCGAGCAACTGTCGGAACTGGTGGCCCTGCGCGAC
ACCGGTTGCGTGGCCTTCACCAATGGCCTGCATGGCTTCGCCAGCAACCGCATCCTGCGGCGCGCCCTGGAG
TACGCGGCGACCTTCGACCTGACGGTGATCTTCACCTCGCAGGACACCGATCTCGCCGAAGGCGGCCTCGCC
CACGAAGGCCCGACTGCCAGCTTCCTCGGCCTCGCGGGGATCCCGGAAACCGCCGAGACCGTGGCCCTGGCC
CGCAACCTGCTGCTGGTGGAACAGAGCGGCGTGCGCGCGCACTTCAGCCAGTTGACCAGCGCCCGCGGCATC
GAACTTGTCGCCCAGGCCCAGGCCCGCGGCCTGCCGGTGACCTGCGACGTGGCGCTGTACCAGTTGATCCTC
ACCGACGAAGCGCTGGTGGGCTTCTCCAGCCTCTACCACGTGCAACCGCCGCTGCGCACCAAGGCCGACCGC
GAAGCCCTGCGCGAGGCGGTGAAGAACGGCGTGGTACAAGCCATCGCCAGCCACCACCAACCCCACGAGGCG
GACGCCAAGAACGCGCCGTTCGCCGCCACCGAGCCGGGCATCAGCGGCGCCGAGCTGCTGCTGCCGCTGGCG
ATGACGCTGGTGCAGGACGGCCTGCTCGACCTGCCGACCCTGCTCGCCCGCCTCTCCCACGGCCCGGCCCAG
GCGCTGCGCCTGCCTGCCGGGCGCCTGGCGGTGGGCCAGGCCGCCGACCTGGTGCTGTTCGACCCGCAGGGT
TCGACCCTGGCCGGTGAGAGCTGGTACTCGAAGGGGCAGAACAGCCCGTTCGTCGGTCACTGCCTGCCGGGA
CGAGTGCGTTACACCCTGGTGGACGGACACCTGACCCACGAGGGCTGA
Translation:
MTISIRGARVIDPASGLDQVGDLHIEAGKIVAIGAAPAGFSAQKTLDGAGLVAAPGLVDLSVALREPGYGRK
GNVESETRAAAAGGTTSLCCPPYTRPVLDTPAVAELILDRAREAGNAKVYPIGALTRGFGGEQLSELVALRD
TGCVAFTNGLHGFASNRILRRALEYAATFDLTVIFTSQDTDLAEGGLAHEGPTASFLGLAGIPETAETVALA
RNLLLVEQSGVRAHFSQLTSARGIELVAQAQARGLPVTCDVALYQLILTDEALVGFSSLYHVQPPLRTKADR
EALREAVKNGVVQAIASHHQPHEADAKNAPFAATEPGISGAELLLPLAMTLVQDGLLDLPTLLARLSHGPAQ
ALRLPAGRLAVGQAADLVLFDPQGSTLAGESWYSKGQNSPFVGHCLPGRVRYTLVDGHLTHEG*
AnnotationID:1367GeneID:1358
AnnotatorUID: danlee
Modification Date/Time: 2006-01-31 13:01:52
Gene Name:
Confidence Code:2
GeneProduct:noncatalytic dihydroorotase-like protein noncataly
Cell Localization:()
Synonyms:pyrX, pyrC'
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0044, KOG2584
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:
DHOase-like polypeptide that lacks DHOase activity, but is necessary for the structure and function of ATCase


















    ReferenceID:2719




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17042




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI - Conserved Domain Search (BLASTP).






    
Reference Type:Blast (text/plain)







    
Data:PA0401_CDS.cgi


    		




 
URL:

















    ReferenceID:19864




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1358
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2467
                           PA0401_tr
                           translation of PA0401
                           423
                           99.52
                           99.76
                           0
                           2130.0
     

     
     
78372
                           gb|AAG03790.1|AE004477_7
                           (AE004477) noncatalytic dihydroorotase-like protein [Pseudomonas aeruginosa PAO1]
                           423
                           99.52
                           99.76
                           0
                           2130.0
     

     
     
78373
                           gb|AAA25977.1|
                           (L19649) dihydroorotase-like [Pseudomonas aeruginosa]
                           423
                           98.81
                           99.05
                           0
                           2112.0
     

     
     
78374
                           gb|AAN70565.1|AE016699_6
                           (AE016792) dihydroorotase, multifunctional complex type [Pseudomonas putida KT2440]
                           423
                           80.37
                           87.23
                           0
                           1734.0
     

     
     
78376
                           gb|AAG15559.1|
                           (AY007523) dihydro-orotase PyrC [Pseudomonas fluorescens]
                           423
                           79.19
                           87.94
                           0
                           1702.0
     

     






      

          
GC ORFID: 44360How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0401Glimmer Score: 

          
Start: 6260770Stop: 6259499

          
Length: 1272


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0401 translation of PA0401Homolog Bit Score 825.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3715 (ORF: BLASTX 662.0), t_PA0401 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCATCAGTATCCGAGGCGCCCGCGTCATCGACCCGGCCAGCGGCCTGGACCAGGTCGGCGACCTCCAC 
ATCGAGGCCGGCAAGATCGTCGCCATCGGCGCCGCGCCGGCCGGCTTCAGCGCCCAGAAGACCCTCGACGGC 
GCCGGCCTGGTGGCCGCGCCGGGACTGGTCGACCTCAGCGTCGCCCTGCGCGAGCCGGGCTACGGACGCAAG 
GGCAACGTCGAAAGCGAGACCCGCGCCGCCGCGGCCGGCGGCACCACCAGCCTGTGCTGCCCGCCCTATACC 
CGGCCGGTGCTGGACACCCCGGCGGTGGCCGAGCTGATCCTCGACCGGGCCCGTGAGGCCGGCAACGCCAAG 
GTCTACCCCATCGGCGCGCTGACCCGCGGCTTCGGCGGCGAGCAACTGTCGGAACTGGTGGCCCTGCGCGAC 
ACCGGTTGCGTGGCCTTCACCAATGGCCTGCATGGCTTCGCCAGCAACCGCATCCTGCGGCGCGCCCTGGAG 
TACGCGGCGACCTTCGACCTGACGGTGATCTTCACCTCGCAGGACACCGATCTCGCCGAAGGCGGCCTCGCC 
CACGAAGGCCCGACTGCCAGCTTCCTCGGCCTCGCGGGGATCCCGGAAACCGCCGAGACCGTGGCCCTGGCC 
CGCAACCTGCTGCTGGTGGAACAGAGCGGCGTGCGCGCGCACTTCAGCCAGTTGACCAGCGCCCGCGGCATC 
GAACTTGTCGCCCAGGCCCAGGCCCGCGGCCTGCCGGTGACCTGCGACGTGGCGCTGTACCAGTTGATCCTC 
ACCGACGAAGCGCTGGTGGGCTTCTCCAGCCTCTACCACGTGCAACCGCCGCTGCGCACCAAGGCCGACCGC 
GAAGCCCTGCGCGAGGCGGTGAAGAACGGCGTGGTACAAGCCATCGCCAGCCACCACCAACCCCACGAGGCG 
GACGCCAAGAACGCGCCGTTCGCCGCCACCGAGCCGGGCATCAGCGGCGCCGAGCTGCTGCTGCCGCTGGCG 
ATGACGCTGGTGCAGGACGGCCTGCTCGACCTGCCGACCCTGCTCGCCCGCCTCTCCCACGGCCCGGCCCAG 
GCGCTGCGCCTGCCTGCCGGGCGCCTGGCGGTGGGCCAGGCCGCCGACCTGGTGCTGTTCGACCCGCAGGGT 
TCGACCCTGGCCGGTGAGAGCTGGTACTCGAAGGGGCAGAACAGCCCGTTCGTCGGTCACTGCCTGCCGGGA 
CGAGTGCGTTACACCCTGGTGGACGGACACCTGACCCACGAGGGCTGA