ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1357

TrivialName: PA14_63660

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_63660

PAO1 Ortholog Locus: PA4816

Sequence Length: 1236

Protein Length: 411

Start: 5676805

Stop: 5678040

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG08201.1|AE004895_1 (AE004895) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 407/411 (99%), Positives = 408/411 (99%)

Sequence:

ATGTCCTTTTCCCGCACTCTCGGCGACGGCCGGATCAATCTCGAACAGCAACGCAAGCGCGCCAAGGAGCTG
TTGCGCCAGTGGCGCCGCGACCCGGCCAGCCGTACAGGGCTTCCGGGGCAGGAGCCGCGCCTGGCCGACGCC
CAGTGGCAGGTGGCGCGCGAACTGGGCTTCGCCAGTTGGCCGCGACTCAAGGCGCATGTCGACGCCATCGCC
TTCGCCAGCCGCCACCCCGATCTGGTCGGCGGCGATGAGGCCGCGACCCTGCACCTGCGTTGCGGCAACGAC
ATCGCCCACGGCCTGAAGCTCGCCGGCTTTCGCAGCGACTTCCGGATGTTCGCCGACCCGCTGACCATGGGA
CCGGTGCCGAACCTGCCGTTGCCCGAGTTCCTCGCCCTGCGCAGCGACTACCTGAGCCGCGCCTTCGACCTC
GACCCGGCCGACGCCCAGGCCCGCCAGCGCCAGGAATACGCCGGGCTCGAGCGGCTCGGCGAATACTCGCGG
GTGGCGCTCTGGTGCGAGGCGGATGCCTACGACCAGTTGTTCCTGGTCCGGGTGCTGGCAGGAATGCAGACG
CCGCCGGAGCATCTGGAACTGATCGAGATCGACCGCGTGCCAGGCGTCGAGCGCTTCGTCGGCATCGGCCAA
CTGGCGCCTGAGCTGCTCGCCTGGCTATGGACTCGGCGTCGCCCGCTGGACGCCGAAGCCCTGGCGCTGGCC
CGCGCGGCCTGGGACGCCTACCGCGATCCGGCGCCACTGCGCTGGGCGCAACTGGCCGCCGCGCCAACCCCG
GCGCTACCGTTGCTGGGGCCGGCGCTGCGTCGGCAACTGCATGAACTGCCGGCCCTGCGCGACGGCCTGTCG
CTGAGCGAACGGCTGACCCTGGAGATCGTCCGCGACGGCGAGCGGCCGAGCGCCGGCCAGGTCTTCGCCGAG
CTGACCGCACGGCGCGAGCCGCTGCCCTATCTCGGCGACCTGATGTTCCGCGTCCTGCTCCGCGCGCTGCTG
GAAGAGCCCGGTGCGCTGCTGCGCACGCCGGCGCCGGAACTGCCCTGGGAACGCCAGCCGCTGGCGCTGACC
GCTGCGGGCCGCGAGGTCCTGGCCGGGCGGCGCTACCGCCTCGACCTCGGCGCCCCCGAACGCTGGGTCGGC
GGCGTACGCCTGCGCGCCGGCACCGCGCACTGGGCTCTGGACGAGCAGGACCGGCCGGTATGGCGGGAGGAC
CCACGGCACTGA

Translation:

MSFSRTLGDGRINLEQQRKRAKELLRQWRRDPASRTGLPGQEPRLADAQWQVARELGFASWPRLKAHVDAIA
FASRHPDLVGGDEAATLHLRCGNDIAHGLKLAGFRSDFRMFADPLTMGPVPNLPLPEFLALRSDYLSRAFDL
DPADAQARQRQEYAGLERLGEYSRVALWCEADAYDQLFLVRVLAGMQTPPEHLELIEIDRVPGVERFVGIGQ
LAPELLAWLWTRRRPLDAEALALARAAWDAYRDPAPLRWAQLAAAPTPALPLLGPALRRQLHELPALRDGLS
LSERLTLEIVRDGERPSAGQVFAELTARREPLPYLGDLMFRVLLRALLEEPGALLRTPAPELPWERQPLALT
AAGREVLAGRRYRLDLGAPERWVGGVRLRAGTAHWALDEQDRPVWREDPRH*

AnnotationID:1366 GeneID:1357

AnnotatorUID: diggins

Modification Date/Time: 2005-03-11 06:06:53

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA4816

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Comment:

ReferenceID:2717

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:19862

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:1357

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2466 PA4816_tr translation of PA4816 411 99.02 99.27 0 2131.0

78371 gb|AAG08201.1|AE004895_1 (AE004895) hypothetical protein PA4816 [Pseudomonas aeruginosa PAO1] 411 99.02 99.27 0 2131.0

GC ORFID: `44359`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA4816`	Glimmer Score:
Start: `4940485`	Stop: `4941720`
Length: `1236`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA4816 translation of PA4816`	Homolog Bit Score `825.0`
Other Homologs: `t_PA4816 (ORF: GLIMMER)`
GC ORF Sequence
ATGTCCTTTTCCCGCACTCTCGGCGACGGCCGGATCAATCTCGAACAGCAACGCAAGCGCGCCAAGGAGCTG TTGCGCCAGTGGCGCCGCGACCCGGCCAGCCGTACAGGGCTTCCGGGGCAGGAGCCGCGCCTGGCCGACGCC CAGTGGCAGGTGGCGCGCGAACTGGGCTTCGCCAGTTGGCCGCGACTCAAGGCGCATGTCGACGCCATCGCC TTCGCCAGCCGCCACCCCGATCTGGTCGGCGGCGATGAGGCCGCGACCCTGCACCTGCGTTGCGGCAACGAC ATCGCCCACGGCCTGAAGCTCGCCGGCTTTCGCAGCGACTTCCGGATGTTCGCCGACCCGCTGACCATGGGA CCGGTGCCGAACCTGCCGTTGCCCGAGTTCCTCGCCCTGCGCAGCGACTACCTGAGCCGCGCCTTCGACCTC GACCCGGCCGACGCCCAGGCCCGCCAGCGCCAGGAATACGCCGGGCTCGAGCGGCTCGGCGAATACTCGCGG GTGGCGCTCTGGTGCGAGGCGGATGCCTACGACCAGTTGTTCCTGGTCCGGGTGCTGGCAGGAATGCAGACG CCGCCGGAGCATCTGGAACTGATCGAGATCGACCGCGTGCCAGGCGTCGAGCGCTTCGTCGGCATCGGCCAA CTGGCGCCTGAGCTGCTCGCCTGGCTATGGACTCGGCGTCGCCCGCTGGACGCCGAAGCCCTGGCGCTGGCC CGCGCGGCCTGGGACGCCTACCGCGATCCGGCGCCACTGCGCTGGGCGCAACTGGCCGCCGCGCCAACCCCG GCGCTACCGTTGCTGGGGCCGGCGCTGCGTCGGCAACTGCATGAACTGCCGGCCCTGCGCGACGGCCTGTCG CTGAGCGAACGGCTGACCCTGGAGATCGTCCGCGACGGCGAGCGGCCGAGCGCCGGCCAGGTCTTCGCCGAG CTGACCGCACGGCGCGAGCCGCTGCCCTATCTCGGCGACCTGATGTTCCGCGTCCTGCTCCGCGCGCTGCTG GAAGAGCCCGGTGCGCTGCTGCGCACGCCGGCGCCGGAACTGCCCTGGGAACGCCAGCCGCTGGCGCTGACC GCTGCGGGCCGCGAGGTCCTGGCCGGGCGGCGCTACCGCCTCGACCTCGGCGCCCCCGAACGCTGGGTCGGC GGCGTACGCCTGCGCGCCGGCACCGCGCACTGGGCTCTGGACGAGCAGGACCGGCCGGTATGGCGGGAGGAC CCACGGCACTGA